BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34030.1
Length=2033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328341 jgi|Araly1|328341|fgenesh1_pm.C_scaffold_7000568 1258 0.0
> Ahg328341 jgi|Araly1|328341|fgenesh1_pm.C_scaffold_7000568
Length=1881
Score = 1258 bits (681), Expect = 0.0
Identities = 760/799 (95%), Gaps = 2/799 (0%)
Strand=Plus/Plus
Query 120 ATGTTAAGGATTTTGGGGAGAAGAGTTGTTTCAGCTTC-GAAAGAGCTTACTAGTATTCA 178
||||| || ||||| |||||||||| ||||||| ||| | |||||||||||||||||||
Sbjct 1 ATGTTGAGAATTTTAAGGAGAAGAGTAGTTTCAGTTTCTG-AAGAGCTTACTAGTATTCA 59
Query 179 ACAATGGCGGATCCGACCAGGAACCGATTCTCGTCCCGATCCTTTTCGAACTTTCCGGGG 238
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 60 ACAATGGCGGATCCGACCAGGAACCGATTCTCGGCCCGATCCTTTTCGAATTTTCCGGGG 119
Query 239 ACTACAAAAGGGTTTCTGCGTGGGCATTTTACCGGACGGAGTCGACAGAAATTCGGAGGC 298
|||||| |||||||||||||||||| || | || ||||||||||| ||||||||||||||
Sbjct 120 ACTACAGAAGGGTTTCTGCGTGGGCGTTCTCCCTGACGGAGTCGATAGAAATTCGGAGGC 179
Query 299 TTTTTCTAGCAATTCGATCGCCATGGAAGGGATCTTATCGGAGCTTCGTTCCCATATCAA 358
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 TTTTTCTAGTAACTCGATCGCCATGGAAGGGATCTTATCGGAGCTTCGTTCCCACATCAA 239
Query 359 AAAGGTATTGGCCGGAGGTGGAGAGGAAGCGGTTAAGAGGAACAGAAGCAGAAACAAGCT 418
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 AAAGGTGTTGGCCGGAGGTGGAGAGGAAGCGGTGAAGAGGAACAGAAGCAGAAACAAGCT 299
Query 419 TTTGCCTAGAGAAAGGATTGATCGGCTACTTGATCCTGGTTCTTCCTTTTTGGAGCTCTC 478
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 TTTGCCTAGAGAAAGGATTGATCGGCTTCTTGATCCTGGTTCTTCCTTTTTGGAGCTCTC 359
Query 479 TCAGCTTGCAGGACATGAATTGTATGAGGAGCCTTTGCCTTCAGGTGGGATAATCACAGG 538
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 TCAGCTTGCAGGACATGAATTGTATGAGGAGCCTTTACCTTCAGGTGGGATAATCACAGG 419
Query 539 GATAGGACCAATCCATGGACGTATTTGTATGTTTATGGCAAATGATCCTACAGTTAAAGG 598
||| |||||||| ||||| ||| |||||||||||||||||||||||||||| || |||||
Sbjct 420 GATTGGACCAATTCATGGCCGTCTTTGTATGTTTATGGCAAATGATCCTACTGTCAAAGG 479
Query 599 AGGGACGTATTATCCCATTACTATCAAGAAACATCTCAGAGCACAAGAGATTGCTGCTCG 658
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 AGGGACTTATTATCCCATTACTATCAAGAAACATCTCAGGGCACAAGAGATTGCTGCTCG 539
Query 659 GTGCAGACTTCCTTGCATATATCTTGTTGATAGTGGTGGTGCTTACCTTCCAAAACAGGC 718
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTGTAGACTCCCTTGCATATATCTTGTTGATAGTGGTGGTGCTTACCTTCCAAAACAGGC 599
Query 719 TGAGGTTTTCCCTGACAAGGAGAATTTTGGTAGGGTTTTCTACAACGAATCGGTTATGTC 778
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 CGAGGTTTTCCCTGACAAGGAGAATTTTGGTAGGGTTTTCTACAACGAATCCGTTATGTC 659
Query 779 ATCTGATGGAATTCCACAAATCGCCATTGTTTTAGGCTCCTGCACTGCTGGTGGTGCCTA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATCTGATGGAATTCCACAAATCGCCATTGTTTTAGGCTCCTGCACTGCTGGTGGTGCCTA 719
Query 839 CATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGC 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTGGC 779
Query 899 AGGACCGCCACTTGTCAAG 917
|||||| |||||||| |||
Sbjct 780 AGGACCTCCACTTGTTAAG 798
Score = 1208 bits (654), Expect = 0.0
Identities = 690/708 (97%), Gaps = 0/708 (0%)
Strand=Plus/Plus
Query 916 AGGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTTCACTGTA 975
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 839 AGGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACGGTTCACTGTA 898
Query 976 CTGTGTCCGGTGTGTCAGATTATTTTGCTCAAGACGAGCTACATGGCCTCGCTATTGGAA 1035
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 CTGTGTCCGGTGTGTCGGATTATTTTGCTCAAGACGAGCTACATGGACTCGCTATTGGAA 958
Query 1036 GAAACATTGTCAAGAATTTGCACATGGCTGCAAAACAAGGGATGGAAGGAACATTTGGAA 1095
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 GAAACATTGTCAAGAATTTGCACATGGCTGCAAAACAGGGGATGGAAGGAACATTTGGAA 1018
Query 1096 GCAAAAATCTTGTATACAAGGAACCGCTCTATGACATAAACGAGCTTCGCTCCATTGCTC 1155
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1019 GCAAAAATCTTGTATACAAGGAACCGCTCTATGACATAGACGAGCTTCGCTCCATTGCTC 1078
Query 1156 CAGTAGATCACAAACAGCAATTTGATGTGCGGTCTATTATTGCCCGGATTGTTGATGGAA 1215
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1079 CAGTAGATCACAAGCAGCAATTTGATGTGCGGTCTATTATTGCTCGGATTGTTGATGGAA 1138
Query 1216 GTGAATTTGACGAGTTCAAGAAACAATACGGCACTACGCTTGTGACTGGTTTTGCTAGAA 1275
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 GTGAATTTGATGAGTTCAAGAAACAATACGGCACTACGCTTGTGACTGGTTTTGCTAGGA 1198
Query 1276 TTTATGGTCAGACGGTGGGTATTATCGGGAACAATGGCATACTGTTCAATGAATCTGCAC 1335
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTTATGGTCAGACTGTGGGAATTATCGGGAACAATGGCATACTGTTCAATGAATCTGCAC 1258
Query 1336 TAAAAGGAGCTCACTTCATCGAATTATGTTCTCAACGTAAAATTCCTCTTGTTTTCCTCC 1395
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1259 TAAAAGGAGCTCACTTCATCGAATTATGTTCCCAACGTAAAATTCCTCTTGTTTTCCTCC 1318
Query 1396 AAAACATCACAGGCTTTATGGTGGGTTCTAGAGCTGAGGCCAACGGCATTGCAAAAGCTG 1455
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1319 AAAACATCACAGGCTTTATGGTGGGTTCAAGAGCTGAGGCCAATGGCATTGCAAAAGCTG 1378
Query 1456 GAGCGAAAATGGTGATGGCAGTATCCTGTGCTAAGGTACCAAAGATTACAATCATAACGG 1515
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1379 GAGCGAAAATGGTGATGGCAGTATCTTGTGCTAAGGTACCAAAGATTACAATTATAACAG 1438
Query 1516 GTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTA 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTA 1498
Query 1576 TGTTCATTTGGCCAAACGCCAGAATTGGCATCATGGGAGGCGCTCAGG 1623
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1499 TGTTCATTTGGCCAAACGCCAGAATTGGCATCATGGGCGGCGCTCAGG 1546
Score = 449 bits (243), Expect = 3e-125
Identities = 255/261 (98%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1623 GCTGCAGGTGTTTTAACTCAGATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAGTGG 1682
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 GCTGCGGGTGTTTTAACTCAGATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAGTGG 1680
Query 1683 ACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATGAGAGAGAGGCA 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 ACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATGAGAGAGAGGCA 1740
Query 1743 AATCCTTACTACTCGACGGCGAGACTTTGGGATGATGGAGTGATTGATCCTTGTGATACC 1802
|||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1741 AATCCTTACTTCTCGACGGCGAGGCTTTGGGATGATGGAATGATTGATCCTTGTGATACC 1800
Query 1803 AGAAAGGTTTTGGGACTTTGTCTCTCTGCTGCTTTAAACCGTCCTTTAGAAGATACTCGA 1862
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1801 AGAAAGGTTTTGGGACTTTGTCTCTCTGCTGCTTCAAACCGTCCGTTAGAAGATACTCGA 1860
Query 1863 TTTGGTGTCTTTAGAATGTAA 1883
|||||||||||||||||||||
Sbjct 1861 TTTGGTGTCTTTAGAATGTAA 1881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76447121715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5