BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34030.1 Length=2033 Score E Sequences producing significant alignments: (Bits) Value Ahg328341 jgi|Araly1|328341|fgenesh1_pm.C_scaffold_7000568 1258 0.0 > Ahg328341 jgi|Araly1|328341|fgenesh1_pm.C_scaffold_7000568 Length=1881 Score = 1258 bits (681), Expect = 0.0 Identities = 760/799 (95%), Gaps = 2/799 (0%) Strand=Plus/Plus Query 120 ATGTTAAGGATTTTGGGGAGAAGAGTTGTTTCAGCTTC-GAAAGAGCTTACTAGTATTCA 178 ||||| || ||||| |||||||||| ||||||| ||| | ||||||||||||||||||| Sbjct 1 ATGTTGAGAATTTTAAGGAGAAGAGTAGTTTCAGTTTCTG-AAGAGCTTACTAGTATTCA 59 Query 179 ACAATGGCGGATCCGACCAGGAACCGATTCTCGTCCCGATCCTTTTCGAACTTTCCGGGG 238 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 60 ACAATGGCGGATCCGACCAGGAACCGATTCTCGGCCCGATCCTTTTCGAATTTTCCGGGG 119 Query 239 ACTACAAAAGGGTTTCTGCGTGGGCATTTTACCGGACGGAGTCGACAGAAATTCGGAGGC 298 |||||| |||||||||||||||||| || | || ||||||||||| |||||||||||||| Sbjct 120 ACTACAGAAGGGTTTCTGCGTGGGCGTTCTCCCTGACGGAGTCGATAGAAATTCGGAGGC 179 Query 299 TTTTTCTAGCAATTCGATCGCCATGGAAGGGATCTTATCGGAGCTTCGTTCCCATATCAA 358 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 TTTTTCTAGTAACTCGATCGCCATGGAAGGGATCTTATCGGAGCTTCGTTCCCACATCAA 239 Query 359 AAAGGTATTGGCCGGAGGTGGAGAGGAAGCGGTTAAGAGGAACAGAAGCAGAAACAAGCT 418 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 240 AAAGGTGTTGGCCGGAGGTGGAGAGGAAGCGGTGAAGAGGAACAGAAGCAGAAACAAGCT 299 Query 419 TTTGCCTAGAGAAAGGATTGATCGGCTACTTGATCCTGGTTCTTCCTTTTTGGAGCTCTC 478 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 TTTGCCTAGAGAAAGGATTGATCGGCTTCTTGATCCTGGTTCTTCCTTTTTGGAGCTCTC 359 Query 479 TCAGCTTGCAGGACATGAATTGTATGAGGAGCCTTTGCCTTCAGGTGGGATAATCACAGG 538 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 TCAGCTTGCAGGACATGAATTGTATGAGGAGCCTTTACCTTCAGGTGGGATAATCACAGG 419 Query 539 GATAGGACCAATCCATGGACGTATTTGTATGTTTATGGCAAATGATCCTACAGTTAAAGG 598 ||| |||||||| ||||| ||| |||||||||||||||||||||||||||| || ||||| Sbjct 420 GATTGGACCAATTCATGGCCGTCTTTGTATGTTTATGGCAAATGATCCTACTGTCAAAGG 479 Query 599 AGGGACGTATTATCCCATTACTATCAAGAAACATCTCAGAGCACAAGAGATTGCTGCTCG 658 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 480 AGGGACTTATTATCCCATTACTATCAAGAAACATCTCAGGGCACAAGAGATTGCTGCTCG 539 Query 659 GTGCAGACTTCCTTGCATATATCTTGTTGATAGTGGTGGTGCTTACCTTCCAAAACAGGC 718 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GTGTAGACTCCCTTGCATATATCTTGTTGATAGTGGTGGTGCTTACCTTCCAAAACAGGC 599 Query 719 TGAGGTTTTCCCTGACAAGGAGAATTTTGGTAGGGTTTTCTACAACGAATCGGTTATGTC 778 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 600 CGAGGTTTTCCCTGACAAGGAGAATTTTGGTAGGGTTTTCTACAACGAATCCGTTATGTC 659 Query 779 ATCTGATGGAATTCCACAAATCGCCATTGTTTTAGGCTCCTGCACTGCTGGTGGTGCCTA 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 ATCTGATGGAATTCCACAAATCGCCATTGTTTTAGGCTCCTGCACTGCTGGTGGTGCCTA 719 Query 839 CATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGC 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 720 TATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTGGC 779 Query 899 AGGACCGCCACTTGTCAAG 917 |||||| |||||||| ||| Sbjct 780 AGGACCTCCACTTGTTAAG 798 Score = 1208 bits (654), Expect = 0.0 Identities = 690/708 (97%), Gaps = 0/708 (0%) Strand=Plus/Plus Query 916 AGGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTTCACTGTA 975 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 839 AGGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACGGTTCACTGTA 898 Query 976 CTGTGTCCGGTGTGTCAGATTATTTTGCTCAAGACGAGCTACATGGCCTCGCTATTGGAA 1035 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 899 CTGTGTCCGGTGTGTCGGATTATTTTGCTCAAGACGAGCTACATGGACTCGCTATTGGAA 958 Query 1036 GAAACATTGTCAAGAATTTGCACATGGCTGCAAAACAAGGGATGGAAGGAACATTTGGAA 1095 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 959 GAAACATTGTCAAGAATTTGCACATGGCTGCAAAACAGGGGATGGAAGGAACATTTGGAA 1018 Query 1096 GCAAAAATCTTGTATACAAGGAACCGCTCTATGACATAAACGAGCTTCGCTCCATTGCTC 1155 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1019 GCAAAAATCTTGTATACAAGGAACCGCTCTATGACATAGACGAGCTTCGCTCCATTGCTC 1078 Query 1156 CAGTAGATCACAAACAGCAATTTGATGTGCGGTCTATTATTGCCCGGATTGTTGATGGAA 1215 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1079 CAGTAGATCACAAGCAGCAATTTGATGTGCGGTCTATTATTGCTCGGATTGTTGATGGAA 1138 Query 1216 GTGAATTTGACGAGTTCAAGAAACAATACGGCACTACGCTTGTGACTGGTTTTGCTAGAA 1275 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1139 GTGAATTTGATGAGTTCAAGAAACAATACGGCACTACGCTTGTGACTGGTTTTGCTAGGA 1198 Query 1276 TTTATGGTCAGACGGTGGGTATTATCGGGAACAATGGCATACTGTTCAATGAATCTGCAC 1335 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TTTATGGTCAGACTGTGGGAATTATCGGGAACAATGGCATACTGTTCAATGAATCTGCAC 1258 Query 1336 TAAAAGGAGCTCACTTCATCGAATTATGTTCTCAACGTAAAATTCCTCTTGTTTTCCTCC 1395 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1259 TAAAAGGAGCTCACTTCATCGAATTATGTTCCCAACGTAAAATTCCTCTTGTTTTCCTCC 1318 Query 1396 AAAACATCACAGGCTTTATGGTGGGTTCTAGAGCTGAGGCCAACGGCATTGCAAAAGCTG 1455 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1319 AAAACATCACAGGCTTTATGGTGGGTTCAAGAGCTGAGGCCAATGGCATTGCAAAAGCTG 1378 Query 1456 GAGCGAAAATGGTGATGGCAGTATCCTGTGCTAAGGTACCAAAGATTACAATCATAACGG 1515 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | Sbjct 1379 GAGCGAAAATGGTGATGGCAGTATCTTGTGCTAAGGTACCAAAGATTACAATTATAACAG 1438 Query 1516 GTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTA 1575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 GTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTA 1498 Query 1576 TGTTCATTTGGCCAAACGCCAGAATTGGCATCATGGGAGGCGCTCAGG 1623 ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1499 TGTTCATTTGGCCAAACGCCAGAATTGGCATCATGGGCGGCGCTCAGG 1546 Score = 449 bits (243), Expect = 3e-125 Identities = 255/261 (98%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 1623 GCTGCAGGTGTTTTAACTCAGATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAGTGG 1682 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 GCTGCGGGTGTTTTAACTCAGATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAGTGG 1680 Query 1683 ACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATGAGAGAGAGGCA 1742 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1681 ACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATGAGAGAGAGGCA 1740 Query 1743 AATCCTTACTACTCGACGGCGAGACTTTGGGATGATGGAGTGATTGATCCTTGTGATACC 1802 |||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 1741 AATCCTTACTTCTCGACGGCGAGGCTTTGGGATGATGGAATGATTGATCCTTGTGATACC 1800 Query 1803 AGAAAGGTTTTGGGACTTTGTCTCTCTGCTGCTTTAAACCGTCCTTTAGAAGATACTCGA 1862 |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 1801 AGAAAGGTTTTGGGACTTTGTCTCTCTGCTGCTTCAAACCGTCCGTTAGAAGATACTCGA 1860 Query 1863 TTTGGTGTCTTTAGAATGTAA 1883 ||||||||||||||||||||| Sbjct 1861 TTTGGTGTCTTTAGAATGTAA 1881 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76447121715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5