BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34040.1
Length=2837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491267 jgi|Araly1|491267|fgenesh2_kg.7__700__AT4G34040.1 4017 0.0
Ahg931278 jgi|Araly1|931278|scaffold_303735.1 1020 0.0
> Ahg491267 jgi|Araly1|491267|fgenesh2_kg.7__700__AT4G34040.1
Length=2746
Score = 4017 bits (2175), Expect = 0.0
Identities = 2591/2782 (93%), Gaps = 68/2782 (2%)
Strand=Plus/Plus
Query 18 TAATCTCTACGCCTCTTAATCC-TCTCTTCCCTCATCCACTGc-t-tc-------ttttt 67
||||||||| |||||||||||| | |||||||||||||||||| | || |||||
Sbjct 1 TAATCTCTAGGCCTCTTAATCCTTGTCTTCCCTCATCCACTGCTTCTCTTTTTTTTTTTT 60
Query 68 ttaataacccatttcatctctttccccttttacgctcttttctttcttcattttctgtgg 127
|||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||
Sbjct 61 TTAATAACCCATTTCATCTCTTTCCCCTTTTATGCTCTTTTCATTCTTCATCTTCTGGGG 120
Query 128 aaattttcagagcttttctGTGTAAATTAAAGAGTTCTTTTTTGAAGGAAATAGGCAATC 187
||||||| || |||||| ||| |||||||||| ||||| |||| | ||||| |
Sbjct 121 AAATTTTGAGTTTTTTTCTTTGTCAATTAAAGAG---ATTTTT-AAGG-GA-GGGCAACC 174
Query 188 TC---ATCCTGA-G--AATCAAACAACCGGAAAATTCAATAAATGAAACGCCTTTAATTG 241
| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ACAATATCCTGATGATAATTAAACAACCGGAAAATTCAATAAATGAAACGCCTTTAATTG 234
Query 242 TTTTTTCTTAC-AAAACTTCTAAGCAGATTACTTTGGCGGAGAC--C-CATCTGATTGGT 297
|||||||||| |||| |||||||||||||||||||| |||||| | || |||||||
Sbjct 235 -TTTTTCTTACAAAAAATTCTAAGCAGATTACTTTGGAGGAGACGACGAATTTGATTGGG 293
Query 298 ATTTTTGCAGATATTCCGTTCTTGGAGTA--CCAACTGGCCTGGAGCTACATTCCTTAGC 355
|||||||||| || ||| | || || |||||||||||||||||||||| || |||
Sbjct 294 ATTTTTGCAGGTACAAAGTT-TCAGA-TATTCCAACTGGCCTGGAGCTACATTTCTGAGC 351
Query 356 CTGGAG-TAAATAATAGGCTGACCCTTTGAAATCA-ACATGGTTTCCTCAAGAACTTAAT 413
|||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 352 CTGGAGCTAAATAAGAGGCTGACCCTTTGAAATCATA-ATGGTTTCCTCAAGAACTTAAC 410
Query 414 AACTTTTCGCTGGTTTCTGTCCTGGAGCGTTGTTGTGTGTTTGGTCAGAGGTATTAATAA 473
|| ||||| |||||||||||||||| | ||||||| |||||
Sbjct 411 AAATTTTCATTGGTTTCTGTCCTGGA-----------------G---GAGGTATAAATAA 450
Query 474 GTCCAATGCAAGGTCCACGAAGCACTGGTGATTCATCGACTGGAATAAATTATGCAGATG 533
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GTCCAATGCAAGGTCCACAAAGCACTGGTGATTCATCGACTGGAATAAATTATGCAGATG 510
Query 534 GAGAACCCATCTGTAGCACCAATTCAGAGACTACTTCCAATAACATCCTGAATCCAGTGG 593
||||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 511 GAGAACCCATCCGTACCACCAATTCAGAGACTACTTCGAATAGCATCCTGAATCCAGTGG 570
Query 594 ATGTTCAGTTTCCAAACAATACTACAGGTTCAGGACGACCAACTTACGCAAGCTCTAGCT 653
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 571 ATGTTCAGTTTCCACACAATACTACAGGTTCAGGACGACCAACTTACCCAAGCTCTAGCT 630
Query 654 CGCATGTTGTTCAAAATCATAACTGGTGGAGTTTTGGTGAATCCAGCTCTAGATTGGGGC 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CGCATGTTGTTCAAAATCATAACTGGTGGAGTTTTGGTGAATCCAGCTCTAGATTGGGGC 690
Query 714 CTTCTGATCATTTAAATTCCAATGGTTCAAAGACTGATCGACAGCTTCTCTCAGATGGCT 773
|||||||||| | ||||| | |||||||||||| ||||| ||||||| |||||| ||||
Sbjct 691 CTTCTGATCAGGTCAATTCTATTGGTTCAAAGACAGATCGCCAGCTTCCCTCAGACGGCT 750
Query 774 ATGGATTTGAGGAAGGGCAATCAGGTATGTTGTTACCTGGAGAGTCCTTTTTGCGTGGGT 833
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 751 ATGGATTTGAGGAAGAGCAATCAGGTATCTTGTTACCTGGAGAGTCCTTTTTGCGTGGGT 810
Query 834 CAAGCTCTAGTCATATGTTAAGTCATGTAAATCTGGGCAAGGACATGGACATTGGTAGTG 893
||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 811 CAAGCTCTAATCATATGTTAGGGCATGTAAATCTGGGCAAGGACATGGACATTGGTAGTG 870
Query 894 GTCTGCAGACTTCTGGGGTCGTTATCCGCCATAATAACTGCGAGACTTCATTGGGAAGCT 953
||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 871 GTCTGCAGACTTCAGGGGTCGTTATCCGCCATAATAACTGTGAGAGTTCATTGGGAAGCT 930
Query 954 CAAGTCAAACCGCAGAGGAGAGAAGCAGTGGTCCAGGTTCTTCGTTGGGTGGTCTAGGTT 1013
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 931 CAAGTCAAACCGCAGAGGAGAGAAGCAGTGGTCCAGGCTCTTCGTTGGGTGGTCTAGGCT 990
Query 1014 CATCCTGCAAAAGAAAGGCTCTTGAAGGAGCTCCTAGCCATTCTTTCCCTGGTGAAAGTC 1073
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 991 CATCATGCAAAAGAAAGGCTCTTGAAGGAGCTCCTAGCCATTCTTTTCCTGGTGAAAGTC 1050
Query 1074 ATGGTTGCTTTTTTCAAACTGAGAATGGTGCTTGGAATGAGGGTCTTGCTCAATATGATG 1133
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1051 ATGGTTGCTTTTTTCAAACTGAGAGTGGTGCTTGGAATGAGGGTCTTGCTCAATATGATG 1110
Query 1134 CTTCAAGTAGCTTAAGTTTGTCTATGCCCTCACAAAATTCTCCAAATGTTAATAATCAGT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTTCAAGTAGCTTAAGTTTGTCTATGCCCTCACAAAATTCTCCAAATGTTAATAATCAGT 1170
Query 1194 CTGGTCTACCAGAACCAAGATTTGGATTGGGTGGTGGGAGAGCAGTTACAGCAAGTGCTT 1253
||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1171 CTGGTATACCGGAACCAAGATTTGGATTGGGTGGTGGAAGAGCAGTTACAGCAAGTGCTT 1230
Query 1254 TTCCTTCTACAAGAAGCACGGAAACCATCTCTAGACCTGGCAGGCGGTTAAATCCTGGGC 1313
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1231 TTCCTTCTACAAGAAGCACTGAAACCATATCTAGACCCGGCAGGCGGTTAAATCCTGGGC 1290
Query 1314 AGCCACCAGAGTCAGTTGCATTCAGCTTCACACAGTCCGGTAGTTCTGTGCGTCAGCAAC 1373
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1291 AGCCACCGGAGTCAGTAGCATTCAGCTTCTCACAGTCCGGTAGTTCTGTGCGTCAGCAAC 1350
Query 1374 AGCAGTTACCAGCAACTTCTCCTTTTGTTGACCCTCTGGATGCAAGAGCAATACCAGTTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 AGCAGTTACCAGCAACTTCTCCTTTTGTTGACCCTCTGGATGCAAGAGCAATACCAGTTA 1410
Query 1434 CAGGTAGCTCAAGCAGTGGTGATGGTCAGCCAAGTATGATCCACCTTCCTGCATTGACAA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 CAGGTAGCTCAAGCAGTGGTGATGGTCAGCCAAGTATGATCCACCTTCCTGCATTGACAA 1470
Query 1494 GAAATATACACCAATTTGCTTGGAGTGCTTCGTCTAGTTCGAGAGCAAACAGTATGCCTG 1553
||||||||||||||||||||||||||||| | || ||||||||| |||||| ||||||||
Sbjct 1471 GAAATATACACCAATTTGCTTGGAGTGCTGCTTCCAGTTCGAGAACAAACAATATGCCTG 1530
Query 1554 AAGAGGGA-TT-G-TCACCATGGGACGCGCCAAGAATAAACTCAGAGCAGCCAGTCTTTA 1610
|||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1531 AAGAGGGATTTGGACCACCATGGGACGCGCCAAGAATCAACTCAGAGCAGCCAGTCTTTA 1590
Query 1611 CTACACCTGCAAATGAAACGAGAAATCCAGTGCAGGATCAGTTTTGTTGGAGTTTCACTC 1670
|||||||||||| |||||||||| |||||||||||||||| ||| |||||| ||||||||
Sbjct 1591 CTACACCTGCAACTGAAACGAGAGATCCAGTGCAGGATCAATTTAGTTGGAATTTCACTC 1650
Query 1671 GTGGAAACCCTAGTACATCTGGAGATTCTCCCTTTGTTCCTCGAGCAGGATCGAGTTCAG 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 GTGGAAACCCTAGTACATCTGGAGATTCTCCCTTTGTTCCTCGAGCAGGATCGAGTTCAG 1710
Query 1731 GGATCCATGGTTTGCAGCCGAATCCCACTTGGGTTACTCCCCATAATCAATCAAGAATAT 1790
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 GGATCCATGGTTTGCAGCAGAATCCCACTTGGGTTACTCCCCATAATCAATCAAGAATAT 1770
Query 1791 CAGAAGTTGCTCCGTGGTCTTTATTTCCTAGTATCGAATCTGAATCTGCTACTCATGGTG 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 CAGAAGTTGCTCCGTGGTCTTTATTTCCTAGTATCGAATCTGAATCTGCTACTCATGGTG 1830
Query 1851 CTTCTCTTCCATTACTACCCACAGGGCCTTCTGTTTCCTCGAATGAAGCTGCAGCGCCGT 1910
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1831 CTTCGCTTCCATTACTACCCACAGGGCCTTCTGTTTCTTCGAACGAAGCTGCAGCGCCGT 1890
Query 1911 CTGGATCTAGTAGTCGTAGTCATCGCTCTCGACAAAGAAGATCGGGATTATTACTGGAAA 1970
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1891 CTGGATCTAGTAGTCGCAGTCATCGCTCTCGACAAAGAAGATCAGGATTGTTACTGGAAA 1950
Query 1971 GGCAAAATGATCATCTCCATTTGCGTCACTTAGGAAGAAGCTTAGCTGCTGATAATGATG 2030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1951 GGCAAAATGATCATCTCCATTTGCGTCACTTAGGAAGAAGCTTAGCTGCTGATAATGATG 2010
Query 2031 GAAGGAACCGGCTGATTTCCGAGATACGGCAGGTGTTGAGTGCCATGCGAAGAGGGGAGA 2090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2011 GAAGGAACCGGCTGATTTCCGAGATACGGCAGGTGTTGAGTGCCATGCGAAGAGGGGAGA 2070
Query 2091 ATTTACGGTTTGAGGATTATATGGTATTCGATCCACTGATCTACCAAGGTATGGCCGAGA 2150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 ATTTACGGTTTGAGGATTATATGGTATTCGATCCACTGATCTACCAAGGTATGGCCGAGA 2130
Query 2151 TGCATGATAGGCATCGGGATATGCGTCTTGATGTTGATAACATGTCATATGAGGAGCTAT 2210
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2131 TGCATGATAGGCATCGGGATATGCGTCTTGATGTTGATAACATGTCGTATGAGGAGCTAT 2190
Query 2211 TGGCACTTGGGGAACGCATAGGAGATGTGAGCACTGGTCTAAGCGAAGAGGTGATCCTGA 2270
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2191 TAGCACTTGGGGAACGCATAGGAGATGTGAGCACTGGTCTAAGCGAAGAGGTGATCCTGA 2250
Query 2271 AAGTAATGAAACAGCACAAACATACATCATCCGCTGCTGGCTCTCACCAGGACATGGAGC 2330
||| |||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 2251 AAGCAATGAAACAGCACAAACATACATCTTCTGCTGCTGGATCTCACCAGGACATGGAGC 2310
Query 2331 CTTGCTGTGTCTGTCAGGAAGAGTATGCAGAAGGAGATGATCTTGGAACACTGGGATGTG 2390
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2311 CTTGCTGTGTCTGTCAGGAAGAGTATGCAGAAGGCGATGATCTTGGAACCCTGGGATGTG 2370
Query 2391 GTCATGAATTTCACACTGCCTGCGTCAAGCAATGGCTGATGCTCAAGAATCTCTGCCCAA 2450
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2371 GTCATGAATTTCACACTGCATGTGTCAAGCAATGGCTGATGCTCAAGAATCTCTGCCCAA 2430
Query 2451 TTTGTAAGACTGTGGCTTTATCGACATAAAAGCACC-GTTCCTTCATCCTCGTCCTCTTT 2509
|||||||||| |||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 2431 TTTGTAAGACAGTGGCTTTATCGACATAAAAGCACTAGT-CCTTCATCATCGTCCTCTTT 2489
Query 2510 CCCTATCTCCTCCCAACCTATTGTGATCCTTGAAATGAAAGAAAAAA--GGAGAAAAAGA 2567
|||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct 2490 CCCTATCTCCTCCCAACCCATTGTGATCCTTGAAGTGAAAGAAAAAAAAGGAGAAAAAGA 2549
Query 2568 GATCGCGTAAGAGGTCGCTTCTGTCTTACCCGCATTGATATCAAGAGAGAGTTGAAACAA 2627
||||| | ||||| ||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 2550 GATCGTG-AAGAGCTCGGTTCTGTCTTACCCGCATTGATACCAAGAGAGAGTTGAAACAA 2608
Query 2628 GGAAGGGCCTGTGATGAATGATCGATCCTTGTGTGGAAGCATCATGTTGAATTACATAGG 2687
|||||||| |||||||||||||| | | | |||| |||||||||||||| ||||||||||
Sbjct 2609 GGAAGGGCGTGTGATGAATGATC-A-C-T-GTGTAGAAGCATCATGTTGGATTACATAGG 2664
Query 2688 AGAAGAGAATAATAACTATCAATTGACTCAATCTTTTGAATTGTTGGATTATGAT--GAT 2745
|||||||||||| |||| ||| || |||||||||| ||||||||||||||||||| |||
Sbjct 2665 AGAAGAGAATAAAAACTGTCATTTTACTCAATCTTCTGAATTGTTGGATTATGATATGAT 2724
Query 2746 AAGTCATTGTTTATTGTCAGTC 2767
||||||||||||||| ||||||
Sbjct 2725 AAGTCATTGTTTATTATCAGTC 2746
> Ahg931278 jgi|Araly1|931278|scaffold_303735.1
Length=2146
Score = 1020 bits (552), Expect = 0.0
Identities = 1358/1731 (78%), Gaps = 120/1731 (7%)
Strand=Plus/Plus
Query 820 CTTT-TTGCGTGGGTCAAGCTCTAGTCATATGTTA-AGTCATGTAAATCTGGGCAAGGAC 877
|||| ||||| || |||||||||| || |||| | || |||||| || || ||| ||||
Sbjct 424 CTTTCTTGCGCGGTTCAAGCTCTAATCCTATGCCACAG-CATGTAGATATGAGCATGGAC 482
Query 878 ATGGACATTGGTAGTGGT-CTG--CAGACTTCTGGGGTCGTTATCCGCCATAATAACTGC 934
||||||| | || | || || |||||||| ||||| |||||||| || |||| ||
Sbjct 483 ATGGACAGCGATAATTGTAGTGCACAGACTTCCGGGGTAGTTATCCGTCACAATAGCTAT 542
Query 935 GAGACTTCATTGGGAAGCTCAAGTCAAACCGCAGAGGAGAGAAGCAGTGGTCCAGGTTCT 994
| || |||||| |||||||||| ||| |||||| |||||| ||||||||||| | ||||
Sbjct 543 GGGAGTTCATTAGGAAGCTCAATTCAGGCCGCAGGGGAGAGCAGCAGTGGTCCTGCTTCT 602
Query 995 TCGTTGGGTGGTCT-AGGTTCATCCTGCAAAAGAAAGGCTCTTGAAGGAGCTCCTAGCCA 1053
|||| |||||| | ||||| ||||||||||||||| |||| |||||| | ||| ||||
Sbjct 603 CCGTTTGGTGGT-TGGGGTTCGTCCTGCAAAAGAAAGACTCTCGAAGGATCCCCTGGCCA 661
Query 1054 TTCTTTCCCTGGTGAAAGTCATGGTTGCTTTTTTCAAACTGAGAATGGTGCTTGGAATG- 1112
|| ||| ||||||||| || | || || |||| ||||| ||| |||||| | |||
Sbjct 662 TTATTTTTCTGGTGAAACTCCTAACCGCATTGTTCAGACTGAAAATAGTGCTTCGCATGC 721
Query 1113 AGGGTCTTGCTCAATATGATGCTTCAAGTAGCTTAAGTTTGTCTATGCCCTCACAAAATT 1172
| ||||| ||||||||| |||||||||||||||||||||| ||| |||||||||| ||
Sbjct 722 A-AGTCTTTCTCAATATGGTGCTTCAAGTAGCTTAAGTTTGGCTACACCCTCACAAAGTT 780
Query 1173 CTCCAAATGTTAATAATCAGTCTGGTC-TACCAGAACCAA-GATTTGGAT-TGGGTGGTG 1229
|||||||||||| |||||| | ||| | | |||||| || | ||||||| | ||||||
Sbjct 781 CTCCAAATGTTACTAATCATTTTGGCCGGA-CAGAACAAATG-TTTGGATCT-AGTGGTG 837
Query 1230 GGAGAGCAGTTACAGCAAGTGCTTTTCCTTCTACAAGAAGCACGGAAACCATCTCTAGAC 1289
| ||||||||| |||| |||||||||| |||| |||||| ||| || ||| | ||||||
Sbjct 838 GAAGAGCAGTTGCAGCCAGTGCTTTTCATTCTGCAAGAAACACTGACACCTTATCTAGAG 897
Query 1290 CTGGCAGGCGGTTAAATCCTGGGCAGCCACCA-GAGTCAGTTGCATTCAGCTTCA-CACA 1347
||||||| || |||||||| ||||||| || ||||| || ||||||||| | | ||||
Sbjct 898 CTGGCAGACGATTAAATCCCAGGCAGCC-TCAGGAGTCTGTAGCATTCAGCGT-ATCACA 955
Query 1348 GTCCGGTAGTTCTGTG-------C--G-TC--AGCAACAGCAGTTACCA--GCAACTTCT 1393
| | || | ||||||| | | || ||||||| | |||||| | ||| |||
Sbjct 956 GGCTGGAACTTCTGTGCATCCCACTGGTTCTTTGCAACAGAATTTACCATTG-AAC-TCT 1013
Query 1394 CCTTTTGTTGACCCTCTGGATGCAAGAGCAATACCAGTTAC-AGGTAGCTCAAGCAGTGG 1452
|| ||||| || ||||| |||| ||| || || || | || ||||||||| |||
Sbjct 1014 CCCTTTGTAGATCCTCTAGATG--TGAG--AT--CA---ACTA-GTGGCTCAAGCACTGG 1063
Query 1453 TGATG-GTCAGCCAAGTATGA-TCCACCTTCCTGCATTGACAAGAAATATACACCAATTT 1510
||| | |||| ||| ||| | ||||||| ||||| ||||| || |||||||||||||||
Sbjct 1064 TGA-GAATCAGACAAATAT-AGTCCACCTCCCTGCTTTGACCAGGAATATACACCAATTT 1121
Query 1511 GCTT-GGAGTGCTTCGTCT-AGTTCGAGAG-CA--AA-----C----A---GTATGCCTG 1553
|||| ||| |||||| | | ||||| |||| || || | | | |||||||
Sbjct 1122 GCTTGGGA-TGCTTC-TTTCAGTTCCAGAGCCAGTAATTCGTCGGGTATTGGGATGCCTG 1179
Query 1554 AAGAGGGATT--G-TCACCA-TGGGACGCGCCAAGAATAAACTCAGAGCAG-CCAGTCTT 1608
|||| |||| | || || ||||| | || |||| ||| |||||||| ||| | |
Sbjct 1180 CAGAGCGATTAGGACCA-CAGTGGGAAACACCGAGAAGCAACCCAGAGCAGCCCA-T-GT 1236
Query 1609 TACTACACCTGCAAATGAAACGAGAAATCCAGTGCAGGATCAGTTTTGTTGGAGTTTCAC 1668
| | ||||||||| ||| | |||| | || ||||| |||| | ||||| |||| |
Sbjct 1237 T--TGCACCTGCAACTGACATGAGACAGCCGGTGCATGATC-----T-TTGGAATTTCTC 1288
Query 1669 TCGTGGAAACCCTAGTACATCTGGAGATTCTCCCTTTGTTCCTCGAGCAGGATCGAGTTC 1728
| |||||||||| || ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1289 ACATGGAAACCCTGGTTCATCTATAGATTCTCCCTTTGTTCCTCGAGCAGGGCCGAGTTC 1348
Query 1729 AGGGATCCATG-GTTTGCAGCCGAATCCCACTTGGGTTACTCCCC--A-T-----AAT-C 1778
|| || |||| | ||||| |||||||| ||| || |||||| | | ||| |
Sbjct 1349 AGCTATTCATGCG-CCACAGCCTAATCCCACATGGATTCCTCCCCAGAGTGCCCCAATAC 1407
Query 1779 --AAT-CA---AGAATATCAGAAGTTGCTCCGTGGTCTTTATTTCCTAGTATCGAATCTG 1832
||| || |||| ||||||| || |||| |||||||||||||||||||| ||||||
Sbjct 1408 ATAATCCATCGAGAACATCAGAACTTTCTCCTTGGTCTTTATTTCCTAGTATTGAATCTC 1467
Query 1833 AATCTGCTACTCATGGTGCTTCTCTTCCATTACTACCCACAGGGCCTTCTGTTTCCTCGA 1892
||||||||| ||| ||||| |||||||||||| ||||| |||| |||||||||||||| |
Sbjct 1468 AATCTGCTAGTCACGGTGCCTCTCTTCCATTATTACCCGCAGGCCCTTCTGTTTCCTCAA 1527
Query 1893 ATGAAGCT-GCAGCGCCGTCTGGATCTAGTAGTCGTAGTCATCGCTCTCGACAAAGAAGA 1951
||| || | ||| ||| ||||| |||| ||| || || |||||||| || |||||||||
Sbjct 1528 ATG-AGGTGGCAATGCCATCTGGTTCTAATAGCCGGAGCCATCGCTCACGGCAAAGAAGA 1586
Query 1952 TC-GGGATTATTACTGGAAAGGCAAAATGATCATCTCCATTTGCGTCACTTAGGAAGAAG 2010
|| ||| || ||| |||| || |||||||| | |||||| ||||||||| |||| || ||
Sbjct 1587 TCAGGG-TTGTTATTGGAGAGACAAAATGAACTTCTCCACTTGCGTCACATAGGGAGGAG 1645
Query 2011 CTTAGCTGCTGATAATGATGGAAGGAACCGGCTGATTTCCGAGATACGGCAGGTGTTG-A 2069
|||||||||||| | |||||||||| | | || ||||||||||| ||||||||| |
Sbjct 1646 CTTAGCTGCTGACGGTAATGGAAGGAATCAAATCATCTCCGAGATACGTCAGGTGTTGCA 1705
Query 2070 GTGCCATGCGAAGAGGGGAGAATTTACGGTTTGAGGATTATATGGTATTCGATCCACTGA 2129
||||||| ||||||| || ||||||||| |||||||||| ||||| ||||||||||| |
Sbjct 1706 -TGCCATGAGAAGAGGAGAAAATTTACGGGTTGAGGATTACATGGTGTTCGATCCACTTA 1764
Query 2130 TCTACCAAGGTATGGCCGAGATGCATGATAGGCATCGGGATATGCGTCTTGATGTTGATA 2189
||||||| |||||| | || |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1765 TCTACCAGGGTATGACTGACATGCATGATAGGCATCGGGAAATGCGGCTTGATGTTGACA 1824
Query 2190 ACATGTCATATGAGGAGCTATTGGCACTTGGGGAACGCATAGGAGATGTGAGCACTGGTC 2249
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1825 ACATGTCGTATGAGGAGCTATTGGCACTTGGGGAACGCATAGGTGATGTGAGCACTGGCC 1884
Query 2250 TAAGCGAAGAGGTGATCCTGAAAGTAATGAAACAGCACAAACATACATCATC--C-GCTG 2306
|||| |||||||| || |||||| | ||||||||||||||||||||| || | |||
Sbjct 1885 TAAGTGAAGAGGTCATTTTGAAAGCATTGAAACAGCACAAACATACATTTTCTTCTGCTT 1944
Query 2307 CTG--GCTC--T--CACCAGGACATGGAGCCTTGCTGTGTCTGTCAGGAAGAGTATGCAG 2360
|| ||| | || ||| |||| ||||| ||||| | |||||||||||||||| ||
Sbjct 1945 CTTCTGCTGAGTTGCATCAGAACATAGAGCCATGCTGCATTTGTCAGGAAGAGTATGTAG 2004
Query 2361 AAGGAGATGATCTTGGAACACTGGGA-TGTGGTCATGAATTTCACACTGCCTGCGTCAAG 2419
|||| ||| |||||||||| || | | ||||| |||||||| |||| | ||| |||||
Sbjct 2005 AAGGTGATAATCTTGGAAC-CTTGAAATGTGGACATGAATTCCACAAGGACTGTATCAAG 2063
Query 2420 CAATGGCTGATGCTCAAGAATCTCTGCCCAATTTGTAAGACTGTGGCTTTA 2470
|||||| | ||| |||||||||||||||| ||||||||||| | ||| |||
Sbjct 2064 CAATGGGTCATGATCAAGAATCTCTGCCCCATTTGTAAGACCGAGGCATTA 2114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107071678695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5