BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34050.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944510 jgi|Araly1|944510|scaffold_700739.1 1369 0.0
> Ahg944510 jgi|Araly1|944510|scaffold_700739.1
Length=820
Score = 1369 bits (741), Expect = 0.0
Identities = 783/804 (97%), Gaps = 0/804 (0%)
Strand=Plus/Plus
Query 50 agagagagaaagagagagaAATGGCGACGACAACAACAGAAGCAACGAAGACATCATCGA 109
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1 AGAGAGAGAGAGAGAGAGAAATGGCGACGACAACTACAGAAGCAACGAAGACATCATCCA 60
Query 110 CCAATGGAGAAGATCAGAAGCAGTCTCAGAATCTTCGACATCAAGAAGTTGGTCACAAGA 169
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 61 CCAATGGAGAAGATCAGAAGCAATCTCAAAATCTTCGACATCAAGAAGTTGGTCACAAGA 120
Query 170 GTCTCTTACAGAGCGATGATCTCTACCAGTATATACTGGAGACAAGTGTGTATCCTAGAG 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCTCTTACAGAGCGATGATCTCTACCAGTATATACTGGAGACAAGTGTGTATCCTAGAG 180
Query 230 AACCAGAATCAATGAAGGAACTCAGGGAAGTGACAGCAAAACATCCATGGAACATAATGA 289
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 181 AACCAGAATCAATGAAGGAACTCAGAGAAGTGACAGCAAAACATCCCTGGAACATAATGA 240
Query 290 CCACATCAGCTGATGAAGGACAGTTCTTAAACATGCTTATCAAGCTCGTTAACGCCAAGA 349
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 CAACATCAGCAGATGAAGGACAGTTCTTGAACATGCTTATCAAGCTCGTTAACGCCAAGA 300
Query 350 ACACAATGGAGATCGGAGTTTACACTGGCTACTCTCTTCTCGCCACCGCTCTTGCTCTCC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACACAATGGAGATCGGAGTTTACACTGGCTACTCTCTTCTCGCCACCGCTCTTGCTCTCC 360
Query 410 CTGAAGACGGCAAAATTCTGGCTATGGATGTCAACAGAGAGAATTACGAATTGGGTTTAC 469
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 361 CTGAAGACGGCAAAATTCTGGCAATGGATGTTAACAGAGAGAATTACGAATTGGGTTTAC 420
Query 470 CGATCATTGAGAAAGCCGGCGTTGCTCACAAGATCGACTTCAGGGAAGGCCCTGCTCTTC 529
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 CGATCATTGAGAAAGCCGGCGTTGCTCACAAGATCGATTTCAGGGAAGGCCCTGCTCTTC 480
Query 530 CCGTTCTTGATGAAATCGTTGCTGACGAGAAGAACCATGGAACATATGACTTTATATTCG 589
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 CCGTTCTTGATGAAATCGTTGCTGATGAGAAGAACCATGGAACATATGACTTTATATTCG 540
Query 590 TTGATGCTGACAAAGACAACTACATCAACTACCACAAGCGTTTGATCGATCTTGTGAAAA 649
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 541 TTGATGCTGACAAAGACAACTACATCAACTACCATAAACGTTTGATCGATCTTGTGAAAA 600
Query 650 TTGGAGGAGTGATTGGCTACGACAACACTCTGTGGAATGGTTCTGTCGTGGCTCCTCCTG 709
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 TTGGAGGAGTGATTGGCTATGACAACACTTTGTGGAATGGTTCTGTCGTGGCTCCTCCTG 660
Query 710 ATGCACCAATGAGGAAGTACGTTCGTTACTACAGAGACTTTGTTCTTGAGCTTAACAAGG 769
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 ATGCACCAATGAGGAAGTACGTTCGTTACTACAGAGACTTTGTTCTTGAGCTCAACAAGG 720
Query 770 CTCTTGCTGCTGACCCTCGGATCGAGATCTGTATGCTCCCTGTTGGTGATGGAATCACTA 829
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 721 CTCTTGCTGCTGACCCTCGGATTGAGATCTGTATGCTCCCTGTTGGTGATGGTATCACTA 780
Query 830 TCTGCCGTCGGATCAGTTGATTTG 853
||||||||||||||||||||||||
Sbjct 781 TCTGCCGTCGGATCAGTTGATTTG 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5