BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34060.1
Length=3308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353424 jgi|Araly1|353424|fgenesh1_pg.C_scaffold_7000597 1496 0.0
Ahg341139 jgi|Araly1|341139|fgenesh1_pg.C_scaffold_3000902 97.1 7e-19
Ahg947576 jgi|Araly1|947576|scaffold_703805.1 86.1 2e-15
> Ahg353424 jgi|Araly1|353424|fgenesh1_pg.C_scaffold_7000597
Length=3219
Score = 1496 bits (810), Expect = 0.0
Identities = 1161/1326 (88%), Gaps = 42/1326 (3%)
Strand=Plus/Plus
Query 94 TCAAGATAATTCACAAACCACCCATaaaaaaaaGGAGAAGAAGAATTCAAAAGAAAAGCA 153
||||||| || |||||| ||| ||| | ||| | |||||| |||||||||||||||| ||
Sbjct 189 TCAAGATGATCCACAAAACACTCATCAGAAAGACGAGAAGGAGAATTCAAAAGAAAATCA 248
Query 154 TGGAATAAAGCATTCTGAATCAGAACATCTTCAAGATGAT-ATTTCGCAACGTGTTACCG 212
|| || ||||| | ||||||||||| | ||||||||||| | ||| ||||||||||| |
Sbjct 249 TGAAAGAAAGCGTGATGAATCAGAACTTTTTCAAGATGATGA-TTCACAACGTGTTACTG 307
Query 213 GAAAAGGAAGGAGAAGGAATTCAAAAGGGACACCaaaaaaaCTGAGGTTTAATAGGCCTC 272
||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 308 GAAAAGGAAGGAGAAAGAATTCAAAAGGGACACCAAGAAAACAGAGGTTTAATAGGCCAC 367
Query 273 GGATCTTGGAAGACGGAAAGAAACCAAGAAATCCCGCCACCACTCGACTGAGAACTATAT 332
| ||||||||||| || ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 368 GTATCTTGGAAGAGGGGAAGAAACCAAGGAATCCAGCCACTACTCGACTGAGAACTATAT 427
Query 333 CCAACAAGAGGAGGAAAAAGGACATAGACAGTGAAGATGAAGTTATACCAGAGCTTGCAA 392
|||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct 428 CCAACAAGAGGAAGAAAAAGGACATAGACAGTGAAGATGAAATTATACCTGAGCCTGCAA 487
Query 393 CTCCAACAAAGGAAAGCT-TTCCAAAG-AGAAGAAAGAACGAGAAGATTAAGAGATCCGT 450
|||||| |||| |||| | |||| ||| ||||||||||||||||||||||||||| |||
Sbjct 488 CTCCAAAAAAGCAAAG-TCTTCC-AAGAAGAAGAAAGAACGAGAAGATTAAGAGAAACGT 545
Query 451 GGCTCGGACTTTAAATTTTAAGCAA-GAAATTGTTCTGAGTTGTCTTGAGTTCGACAAG- 508
|||||||||||| || |||||| || ||||||||||| |||||||||||||||||| ||
Sbjct 546 GGCTCGGACTTTGAACTTTAAG-AAGGAAATTGTTCTTAGTTGTCTTGAGTTCGAC-AGA 603
Query 509 ATTTGTGGACCAATTTTTCCAAGAGGGAAAAAGAGGACCACCACACGACGCAGATATGAT 568
||||||||||||| |||||||| ||||| | |||||| ||||||| ||| |||||||||
Sbjct 604 ATTTGTGGACCAACTTTTCCAAAAGGGAGACAGAGGATGACCACACTACGAAGATATGAT 663
Query 569 TTCCTTTGTTTTTTACTTCCGATGCCTGTTTGGAAAAAACAATCAAGAAGGTCTAAGCGT 628
|||| ||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||
Sbjct 664 TTCCACTGTTTATTACTTCCTATGCCTATTTGGAAAAAACAATCAAGAAGGTCTATGCGT 723
Query 629 AGGAAAAATATGGTCAGATGGGCTAGAATTGCTTCTTCTTCAAAACTGCTAGAAGAAACT 688
||||| ||| |||| |||||||||||||||||||| ||||| ||| | ||||||||||
Sbjct 724 AGGAAGAATGTGGTTAGATGGGCTAGAATTGCTTCGTCTTCTGAACAGATAGAAGAAACC 783
Query 689 TTGCCTTTAATAGT-AAGTCATCCGACTATTAATGGACAAGCAGATGCTTCTTT-ACACA 746
|||||||||||||| ||| |||| || | | |||||| |||||||| |||||| || |
Sbjct 784 TTGCCTTTAATAGTAAAG-CATCAGAAAACTGATGGACGAGCAGATGTTTCTTTGCCA-A 841
Query 747 TTGATGACACACTCGTGAGACA---------TGTAGTCTCAAAGC-AAACCAAGAAAAGT 796
|||| ||||||||| |||||| ||||||||| |||| ||| ||||||||||
Sbjct 842 TTGAAGACACACTCACGAGACATGTTGGTTCTGTAGTCTCCAAGCGAAA-CAAGAAAAGT 900
Query 797 GCTAACAATGTCATTGAGCATTTAAATCGACAAATAACTTATCAGAAAGATCACGGTCTC 856
|||| ||| | ||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 901 ACTAAGAATATTGTTGAGCATTTAAATCAACAAATATCTTATCAGAAAGATCACAGTCTC 960
Query 857 TCATCTCTGGCAGATGTTCCTTTGCACATTGAAGATACACTAATAAAATCGGCTAGTTCT 916
|| ||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 961 TCTTCTCTAGCAGATGTTCCTTTGCACATTGAAGACACACTTATGAAATCGGCTAGTTCT 1020
Query 917 GTACTTTCAGAACGACCCATCAAGAAAACTAAGGATATTGCTAAGTTAATCAAAGATATG 976
|||||| |||||| |||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1021 GTACTTCCAGAACAACCCATCAAGAAGACGAAGGATATTGCTAAGTTAATCAAAGAAATG 1080
Query 977 GGAAGATTAAAGATCAATAAAAAGGTAACAACGATGATCAAAGCTGACAAGAAACTCGTT 1036
|||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||| |||
Sbjct 1081 GGAAGATTAAAGATCAATAAAAGGGTAACAACGATGATCAAATCTGCCAAAAAACTTGTT 1140
Query 1037 ACGGCAAAGGTTAATCTTGATCCAGAGACCATTAAAGAGTGGGATG-TCTTAATGGTGAA 1095
|| |||||||| | |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1141 ACTGCAAAGGTGAGTCTTGATCCAGAGACCATTAAAGAGTGGGA-GCTCTTAATGGTGAA 1199
Query 1096 TGATTC-ACCAAGCCGATCATATGAC-GATAAGGAGACGGAGGCCAAATGGAAAAAAGAA 1153
||| || ||||| ||||||||| | || |||||||| |||||||||||||||||||||
Sbjct 1200 TGA-TCTTCCAAGTAGATCATATG-CTGACAAGGAGACAGAGGCCAAATGGAAAAAAGAA 1257
Query 1154 AGAGAGATTTTTCAAACCCGGATAGATCTTTTCATTAACCGGATGCATCGCTTACAAGGC 1213
||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1258 AGAGAGATTTTCCAAAGTCGGATAGATCTTTTCATTAACCGGATGCATCTTTTACAAGGT 1317
Query 1214 AATAGAAAGTTTAAACAGTGGAAAGGCTCAGTTGTTGACTCAGTGGTTGGAGtttttttG 1273
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1318 AATAGAAAATTTAAGCAGTGGAAAGGCTCGGTTGTTGACTCAGTGGTTGGAGTTTTTCTG 1377
Query 1274 ACACAAAATACTA-CCGACTATCTTTCAAGCAACGCGTTTATGAGCGTGGCTGCAAAATT 1332
||||||||| || |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1378 ACACAAAATG-TAACCGACTATCTTTCAAGCAACGCTTTTATGAGTGTGGCTGCAAAATT 1436
Query 1333 TCCTGTTGATGCAAGAGAAGGTCTA-----TC----ATACTATATTGAGGAACCTCAAGA 1383
|||||| ||||||||||||||| || || |||||| |||||||||||||||||
Sbjct 1437 TCCTGTGGATGCAAGAGAAGGTTTAGAAAGTCTTGCATACTACATTGAGGAACCTCAAGA 1496
Query 1384 TGCTAA 1389
|| |||
Sbjct 1497 TGTTAA 1502
Score = 1120 bits (606), Expect = 0.0
Identities = 724/780 (93%), Gaps = 11/780 (1%)
Strand=Plus/Plus
Query 2025 AGGTTTTCTGCACAAAAACTATTCCTAATTGTAATGCATGTCCAATGAAGTCAGAATGCA 2084
||||||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 2174 AGGTTTTTTGCACAAAAGTTATTCCTAACTGTAATGCATGTCCGATGAAGTCAGAATGCA 2233
Query 2085 AATATTTTGCAAGTGCATATGTCAGTTCTAAA-GTTCTTCTCGAGAGTCCAGAAGAAAAG 2143
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 2234 AATATTTTGCAAGTGCATATGTCAGTTC-AAAGGTTCTTCTCGAGGGTCCAGAAGAAAAG 2292
Query 2144 ATGCATGAGCCTAATACTTTTATGAATGCACATTCTCAAGACGTTGCTGTAGATATGACA 2203
|||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct 2293 ATGCATGAGCCTGATACTTTTATGAATGCATATTCTCAAGACGCTGATGTAGATATGACA 2352
Query 2204 TCAAATATAAATTTGGTAGAAGAATGTGTTTCTTCTGGATGTAGCGATCAAGCTATATGT 2263
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2353 TCAAATATAAATTTGATAGAAGAATGTGTTTCTCCTGGATGTAGCGATCAAGCTATATGT 2412
Query 2264 TATAAGCCACTAGTTGAGTTTCCTTCGTCCCCAAGAGCGGAAATTCCCGAGTCAACAGAC 2323
| ||||||||| |||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 2413 TGTAAGCCACTGGTTGAGTTTCCTTCTTCTCCTAGAGCGGAAATTCCCGAGTCAACAGAC 2472
Query 2324 ATTGAAGATGTTCCATTCATGAATCTTTATCAGTC-ATATGCTAGTGTTCCTAAAATTGA 2382
||||||||| |||||||||| |||| ||||||| | ||||||||| ||||||||||||||
Sbjct 2473 ATTGAAGATATTCCATTCATAAATCCTTATCAG-CTATATGCTAGAGTTCCTAAAATTGA 2531
Query 2383 TTTTGACTTGGATGCATTGAAGAAAAGTGTAGAAGATGCACTTGTAATAA-GTGGCAGGA 2441
||||||| |||||||||||||||||| |||||||||||||||||||| || |||| ||||
Sbjct 2532 TTTTGACATGGATGCATTGAAGAAAAATGTAGAAGATGCACTTGTAA-AAGGTGGTAGGA 2590
Query 2442 ---TGAGCAGTTCTGATGAAGAAATATCAAAAGCATTAGTGA-TTCCCACTCCTGAAAAT 2497
||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 2591 TGTTGAGCAGTTCTGATGAAGAAATATCAAAAGCATTAGT-AGTTCTCACTCCTGAAAAT 2649
Query 2498 GCATGCATTCCTATCAAACCACCTCGGAAAATGAAGTATTATAATCGACTAAGAACTGAA 2557
||||||||||| ||||| || ||||| ||||||||||||||| |||||||||||||||||
Sbjct 2650 GCATGCATTCCAATCAAGCCGCCTCGAAAAATGAAGTATTATGATCGACTAAGAACTGAA 2709
Query 2558 CATGTGGTTTATGTGCTTCCTGATAATCATGAGCTGCTACACGATTTTGAGAGAAGAAAA 2617
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 2710 CATGTGGTTTATGTGCTTCCTGATAATCATGAGCTGCTCCAGGATTTTGAGAGAAGAGAA 2769
Query 2618 CTTGATGATCCAAGTCCTTACCTTCTTGCGATTTGGCAACCAGGTGAAACATCATCCTCG 2677
||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2770 CTTGATGATCCGAGCCCCTACCTTCTTGCGATTTGGCAACCAGGTGAAACGTCATCCTCG 2829
Query 2678 TTCGTTCCACCAAAGAAAAAGTGTAGTTCTGATGGATCAAAGCTTTGCAAGATAAAGAAT 2737
||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 2830 TTCATTCCACCAAAGAAAAAGTGCAATTCTGATGGATCAAAGCTTTGCAAGATAAAGAGT 2889
Query 2738 TGTTCATATTGTTGGACTATACGAGAACAAAACTCCAACATTTTTCGCGGAACAATTTTG 2797
||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 2890 TGTTCGTATTGTTGGACTATACGAGAACAAAGTTCCAACACTTTTCGCGGAACAATTTTG 2949
Score = 745 bits (403), Expect = 0.0
Identities = 501/548 (91%), Gaps = 7/548 (1%)
Strand=Plus/Plus
Query 1379 CAA-GATGCTAAAAGTTCTGAATGTATCATTTTATCTGATGAGTCAATATCAAAGGTGGA 1437
||| ||||||||||||||||| | ||||| ||||||||||||||| ||| || |||| ||
Sbjct 1545 CAATGATGCTAAAAGTTCTGAGTTTATCACTTTATCTGATGAGTCGATACCAGAGGTAGA 1604
Query 1438 AGATCATGAGAATACTGCAAAAAGGAAAAACGAGAAAACCGGTATTATAGAAGATGAGAT 1497
||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1605 AGAACATGAGAACACTGCAAAAAGGAAAAACGAGAAAACCGGTATTATGGAAGATGAGAC 1664
Query 1498 AGTTGACTGGAACAATCTTA-GAAGGATGTACACGAAAGAAGGATCTCGTCCCGAAATGC 1556
|||||||||||| | ||||| ||| ||||||||| |||||||||||||||||| ||||||
Sbjct 1665 AGTTGACTGGAAGACTCTTAGGAA-GATGTACACAAAAGAAGGATCTCGTCCCAAAATGC 1723
Query 1557 ATATGGACTCTGTTAATTGGAGTGACGTGAGATTATCTGGCCAAAATGTTTTGGAAACCA 1616
||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 1724 ATATGGACTCTGTTAATTGGAGTGATGTGAGATTATCTGGCCAAAAAGTTTTTGAAACTA 1783
Query 1617 CCATTAAAAAACGTGGACAATTCAGGATTCTTTCAGAAAGAATATTGAAATTTCTTAACG 1676
|||| | | ||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1784 CCATCAGGAGACGCGGACAATTCAGGATTCTTTCAGAAAGAATTTTGAAATTTCTCAACG 1843
Query 1677 ATGAAGTT-AACCAAAATGGAAATATTGATCTGGAATGGCTTCGAAATGCTCCATCACAT 1735
|||||||| || || ||||||| | ||||||| |||||||| ||||||||||||||| ||
Sbjct 1844 ATGAAGTTCAA-CATAATGGAACTCTTGATCTTGAATGGCTCCGAAATGCTCCATCAGAT 1902
Query 1736 TTAGTGAAGAGATATCTGTTGGAAATCGAAGGGATAGGGCTGAAAAGTGCTGAGTGCGTA 1795
||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||
Sbjct 1903 TTAGTGAAGAGATATCTGTTGGAGATTGAAGGGATAGGACTGAAGAGTGCTGAGTGCGTA 1962
Query 1796 CGACTGTTAGGACTTAAACATCATGCGTTTCCGGTTGACACAAATGTTGGTCGTATAGCA 1855
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 CGGCTGTTAGGACTCAAACATCATGCGTTTCCGGTTGACACAAATGTTGGTCGTATAGCA 2022
Query 1856 GTTCGACTAGGTCTGG-TTCCTCTTGAACCTTTACCAAATGGAGTTCAAATGCATCAACT 1914
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 GTTCGACTTGGT-TGGGTTCCTCTTGAACCTTTACCAAATGGAGTTCAAATGCATCAACT 2081
Query 1915 ATTCGAGT 1922
|||| |||
Sbjct 2082 ATTCCAGT 2089
Score = 377 bits (204), Expect = 2e-103
Identities = 249/271 (92%), Gaps = 1/271 (0%)
Strand=Plus/Plus
Query 2863 GGTTTTTGCTGATCATGAGACAAGCTTAAACCCCATTGTCTTTCGTAGGGAGTTGTGTAA 2922
||||||||||||||||||||| || ||||| ||||||||||||| ||| ||||||||| |
Sbjct 2949 GGTTTTTGCTGATCATGAGACGAGTTTAAAACCCATTGTCTTTCCTAGAGAGTTGTGTGA 3008
Query 2923 GGGACTAGAAAAACGTGCACTATATTGTGGTTCAACAGTGACATCTATTTTTAAACTTTT 2982
|||||||||||||||||| |||||||||||||| |||||||||| |||||| | ||||
Sbjct 3009 CGGACTAGAAAAACGTGCATTATATTGTGGTTCATCAGTGACATCCATTTTTCGATTTTT 3068
Query 2983 AGACACAAGACGGATTGAACTTTGCTTTTGGACAGGGTTTTTATGTTTGAGAGCATTTGA 3042
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||
Sbjct 3069 AGACACAAGACGGATTCAACTTTGCTTTTGGACGGGGTTTTTATGTATGAGAGCATTTGA 3128
Query 3043 TCGAAAGCAACGAGATCCAAAAGAGCTTGTCCGACGTCTACACACTCCACCTGATGAGAG 3102
||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 3129 TCGAAAGCAACGATATCCAAAAGAACTTGTTCGACGACTACACACTCCACCTGATGAGAG 3188
Query 3103 AGGGCCAAAGTTTATGAGTGATGATGATATA 3133
||||||||||||||||| ||||||| |||||
Sbjct 3189 AGGGCCAAAGTTTATGAATGATGAT-ATATA 3218
> Ahg341139 jgi|Araly1|341139|fgenesh1_pg.C_scaffold_3000902
Length=3237
Score = 97.1 bits (52), Expect = 7e-19
Identities = 81/95 (85%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 2786 GGAACAATTTTGATTCCATGTAGAACAGCAATGCGAGG-GGCCTTTCCACTTAATGGAAC 2844
|||||||| ||||| || || |||||||||||| |||| || || || || || || ||
Sbjct 2893 GGAACAATATTGATACCTTGCAGAACAGCAATGAGAGGTGG-ATTCCCTCTGAACGGCAC 2951
Query 2845 ATACTTCCAAACCAATGAGGTTTTTGCTGATCATG 2879
|||||||||||||||||||||||||||||| ||||
Sbjct 2952 ATACTTCCAAACCAATGAGGTTTTTGCTGACCATG 2986
> Ahg947576 jgi|Araly1|947576|scaffold_703805.1
Length=324
Score = 86.1 bits (46), Expect = 2e-15
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 2837 AATGGAACATACTTCCAAACCAATGAGGTTTTTGCTGATCATGAGACAAGCTTAAACCCC 2896
|||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||
Sbjct 42 AATGGAACATACTTCCAAACCAATGAGGTTTTTGCTGATCATGACTCTAGCATCAACCCA 101
Query 2897 ATTG 2900
||||
Sbjct 102 ATTG 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124866897013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5