BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34090.3
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944508 jgi|Araly1|944508|scaffold_700737.1 1402 0.0
Ahg483660 jgi|Araly1|483660|fgenesh2_kg.4__2720__AT4G34080.1 176 4e-43
> Ahg944508 jgi|Araly1|944508|scaffold_700737.1
Length=1033
Score = 1402 bits (759), Expect = 0.0
Identities = 884/941 (94%), Gaps = 21/941 (2%)
Strand=Plus/Plus
Query 353 GGCATGTATCATTTATCAAAGATGTTGCTGCCACTGAACCTCCAATGCATCTTCATCACT 412
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 106 GGCATGTATCTTTTATCAAAGATGTAGCTGCCACTGAACCTCCAATGCATCTTCATCACT 165
Query 413 TACTCAAAGTGCTTCAAACAAGAGGTGAGACAATCATATCTCCTGGAGCTAAGCAGGGAC 472
|||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 166 TACTCAAAGTACTTCAAACAAGAGGTGAAACTATTATATCTCCTGGAGCTAAGCAGGGAC 225
Query 473 TGATCCCTCTTGCTATTCCGCTTTCGAAGAATTCGTCAGGCTCTGTTACTGCGCTTTTGA 532
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 226 TGATCCCTCTTGCTATTCCGCTTTCGAAGAATTCTTCAGGCTCTGTTACTGCGCTTTTGA 285
Query 533 GATGGCCTACTGCTCCACCAGGAATGGATATGCCGGTTGTGGAAGTTTGGAGGAGTGGAG 592
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 286 GATGGCCTACTGCTCCACCAGGAATGGATATGCCGGTTGTGGAAGTTTGGGGGAGTGGAG 345
Query 593 TCAGGCTTATAGCTAGAAATGTAGATGAATACATTCACCGGATTCTAGTTGAAGAAGATG 652
|| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TCCGGCTTATTGCTAGAAACGTAGATGAATACATTCACCGGATTCTAGTTGAAGAAGATG 405
Query 653 CACAAGAGTTGACAGAACTATATCGTGCTTCGGGAGAGGCAGGTGAAAAACTTTACGAAA 712
||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||
Sbjct 406 CACAAGAGTTGACAGAACTTTATCGTGCTTCAGAAGAGGCAGGTGAAAAACTTTACAAAA 465
Query 713 AGGGTGCTTTTGCTGAATCTGAAATTGACAATCTCGATGTCTATGTTTTGAAAAAGGTTG 772
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 466 AGGGTGCTTTTGCTGAATCTCAAATTGACAATCTCGATGTCTATGTCTTGAAAAAGGTTG 525
Query 773 GACTGTTTCCAGATTTGTTGGAGCGGAAAGTATTACGGCATTTTGATGAAGGAGATCATG 832
||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 526 GACTGTTTCCAGATTTGTTGGAGCGAAAAGTATTAAGACATTTTGATGAAGGAGATCATG 585
Query 833 TTTCAGCTATGGTGACAGGAGAATTTTACACAAAGAAAGACCTCTTTCCAGGATTTGGAC 892
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TATCAGCTATGGTGACAGGAGAATTTTACACAAAGAAAGACCTCTTTCCAGGATTTGGAC 645
Query 893 GACCTTTTGTATATTATGCAAACATACTACAGAAGTTTATTCTTATTCGCAGGGTAGGGC 952
|||||||||||||||||||||| ||||| |||||| | ||||||
Sbjct 646 GACCTTTTGTATATTATGCAAATATACTGCAGAAG-------------G-----TAGGGC 687
Query 953 GGAATGT-AGAAGCAAAAGATGCGGCTAGGGTAGCATTGAGATCACCGTGGTGGACATTA 1011
||||| | |||||||||||| |||||||| |||||||||| |||||| ||||||||||||
Sbjct 688 GGAAT-TCAGAAGCAAAAGACGCGGCTAGAGTAGCATTGAAATCACCTTGGTGGACATTA 746
Query 1012 GGATGTCCGTATGAGGAGGTTGCTAGTATAGCACAATGGGAAGACGAGCAGATCGAATTC 1071
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GGATGTCCTTATGAGGAGGTTGCTAGTATAGCACAATGGGAAGACGAGCAGATCGAATTC 806
Query 1072 ATAAGGGAAAAAGTGAGTGATGAAGGTCGTTTTGAAGATTTGCATAAAGGCAAAGCTCCA 1131
|| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 807 ATCAGGGAAAAGGTGAGTGATGAAGGTCGTTTTGAAGATTTAAAGAAAGGCAAAGCTCCA 866
Query 1132 ATCCAAGTTGCGTTGGATGTTGCGGCTTTTCTCTTGGATTTGGCTTCTATCGAAGGAACT 1191
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 867 ATCCAAGTTGCGTTGGATGTTGCGGCTTTTCTCTTGGATTTGGCTTCTATTGAAGGAACT 926
Query 1192 TGGTCCGAATCTTTAAACCATATTGCTAAATGTTATGAGGAAGCTGGATTACACCATATC 1251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TGGTCCGAATCTTTAAACCATATTGCTAAATGTTATGAGGAAGCTGGATTACACCATATT 986
Query 1252 TCTAATTTCGTTTTGTACACAGATTGAATCCATATTA-ATG 1291
|||||||||||||||||||||||||||||||| |||| |||
Sbjct 987 TCTAATTTCGTTTTGTACACAGATTGAATCCAGATTATATG 1027
Score = 154 bits (83), Expect = 2e-36
Identities = 101/109 (93%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 83 AGATAGAGAGATAAGAAGAAGCCATGGGTTCGATTTCGATGCACATAACTCCCTCTACTG 142
|||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1 AGATAGAGAGAT---AAGAAGCCATGGGTTCGATTTCGCTGCACATAACTCCTTCTACTA 57
Query 143 CTCTCCCTATACGCCATTTCAGAGCTAGAGTCTCTTGTTGCTCTTCTGG 191
|||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 58 CTCTCCCTTTACGCCATTTCAGAGCTAGAGTCTCTTGTTTCTCTTCTGG 106
> Ahg483660 jgi|Araly1|483660|fgenesh2_kg.4__2720__AT4G34080.1
Length=1083
Score = 176 bits (95), Expect = 4e-43
Identities = 103/107 (96%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 1292 TATGTTCTTCACAACACTTTCCATGTATGAATCAGAGAACTCACTACCCTTTTTCACTTG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 TATGTTCTTCACAACACTTTCCATGTATGAATCAGAGAACTCACTACCCTTTTTCACTTG 1024
Query 1352 GAAGATCTTTGCAGCTGGATCAAAAGAGTAAGCAAGCTTGTGCAAGA 1398
||||||||| |||||||||||||| ||||| |||||| |||||||||
Sbjct 1023 GAAGATCTTAGCAGCTGGATCAAACGAGTATGCAAGCCTGTGCAAGA 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5