BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34110.1
Length=2441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888668 jgi|Araly1|888668|Al_scaffold_0007_654 3064 0.0
Ahg931277 jgi|Araly1|931277|scaffold_303734.1 1426 0.0
Ahg932329 jgi|Araly1|932329|scaffold_400317.1 307 2e-82
> Ahg888668 jgi|Araly1|888668|Al_scaffold_0007_654
Length=1878
Score = 3064 bits (1659), Expect = 0.0
Identities = 1817/1892 (96%), Gaps = 16/1892 (1%)
Strand=Plus/Plus
Query 346 ATGGCGCAGGTTCAACTTCAGGGTCAGACTCCGAATGGTTCGACCGCGGCGGTCACTTCT 405
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1 ATGGCGCAGGTTCAACTTCAGGGTCAGACTCCGAATGGTTCGACCGTGGCGGTCACTGCT 60
Query 406 GCTCCGGCGACGTCAGGTGGAGCAACGGCGACCCAGTTTGGTAACACGTCGCTTTATGTG 465
||| ||| |||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 61 GCTTCGGTGACGTCAGGTGGAGCAACGGCGGCCGGGTTTGGTACCACGTCGCTTTATGTG 120
Query 466 GGGGATCTCGATTTCAATGTGACGGACTCGCAGCTTTTCGATGCGTTTGGCCAAATGGGT 525
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GGGGATCTCGATTTCAATGTGACGGACTCGCAGCTTTTCGATGCGTTTAGCCAAATGGGT 180
Query 526 ACTGTGGTCACCGTTCGTGTCTGTAGGGATTTGGTCACTCGCCGATCTCTTGGCTATGGA 585
| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 181 CCAGTGGTCTCCGTTCGTGTCTGTAGGGATTTGGCCACTCGCCGATCCCTTGGCTATGGA 240
Query 586 TACGTTAACTTCACCAATCCCCAAGACGCTGCAAGAGCGATCCAAGAACTGAATTACATA 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACGTTAACTTCACCAATCCCCAAGACGCTGCAAGAGCGATCCAAGAACTGAATTACATA 300
Query 646 CCTCTTTATGGAAAACCTATTAGGGTTATGTATTCTCATCGTGATCCTAGTGTTCGCCGA 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CCTCTTTATGGAAAACCTATTAGGGTTATGTATTCTCATCGTGATCCTAGTGTTCGTCGA 360
Query 706 AGTGGCGCTGGCAACATTTTTATTAAGAATTTGGACGAGTCCATCGACCACAAAGCACTG 765
||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 361 AGTGGCGCTGGGAACATTTTCATCAAGAATTTGGACGAGTCCATCGACCACAAAGCACTA 420
Query 766 CATGATACTTTTTCA-TCGTTTGGAAACATTGTGTCGTGCAAGGTAGCTGTCGATTCTTC 824
||||||||||||||| | ||||||||||||||||||||||||||||||||| || |||||
Sbjct 421 CATGATACTTTTTCAGT-GTTTGGAAACATTGTGTCGTGCAAGGTAGCTGTGGACTCTTC 479
Query 825 AGGCCAGTCAAAAGGCTATGGGTTTGTGCAATACGCCAATGAAGAATCTGCCCAGAAAGC 884
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGGCCAATCAAAAGGCTATGGCTTTGTGCAATACGCCAATGAAGAATCTGCCCAGAAAGC 539
Query 885 TATAGAGAAACTGAACGGCATGTTGCTCAATGACAAGCAAGTGTATGTGGGTCCTTTCCT 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TATAGAGAAACTGAACGGCATGTTGCTCAATGACAAGCAAGTGTATGTGGGTCCTTTCCT 599
Query 945 GAGGAGACAAGAAAGAGACTCCACTGCTAACAAAACGAAATTCACCAATGTGTATGTGAA 1004
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGGAGACAAGAAAGAGATTCCACTGCTAACAAAACGAAATTCACCAATGTGTATGTGAA 659
Query 1005 GAATCTCGCGGAAAGTACTACCGATGATGACTTGAAGAATGCTTTTGGCGAGTATGGAAA 1064
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 GAATCTTGCGGAAAGTACTACCGATGATGACTTGAAGAACGCTTTTGGCGAGTATGGAAA 719
Query 1065 GATAACAAGTGCTGTCGTGATGAAAGATGGAGAAGGGAAGTCCAAGGGCTTTGGGTTTGT 1124
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 720 GATAACAAGTGCTGTGGTGATGAAAGATGGAGATGGGAAGTCTAAGGGCTTTGGGTTTGT 779
Query 1125 CAACTTTGAAAATGCTGATGATGCTGCTAGGGCTGTGGAGTCTCTCAATGGGCACAAATT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 780 TAACTTTGAAAATGCTGATGATGCTGCTAGGGCTGTGGAGTCTCTCAATGGGCACAAACT 839
Query 1185 TGATGATAAGGAGTGGTATGTTGGTAGAGCCCAGAAGAAGTCAGAGAGGGAAACAGAATT 1244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 TGATGATAAGGAGTGGTATGTTGGTAGAGCCCAGAAGAAGTCGGAGAGGGAAACAGAATT 899
Query 1245 AAGGGTCCGTTATGAACAGAATTTGAAGGAAGCTGCAGACAAGTTTCAAAGTTCAAACTT 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAGGGTCCGTTATGAACAGAATTTGAAGGAAGCTGCAGACAAGTTTCAAAGTTCAAACTT 959
Query 1305 GTATGTTAAGAATTTGGATCCTAGCATTTCAGATGAGAAACTTAAAGAGATCTTTTCTCC 1364
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 GTATGTGAAGAATTTGGATCCTAGCATTTCAGATGAGAAGCTTAAAGAGATCTTTTCTCC 1019
Query 1365 TTTTGGTACCGTTACATCTAGCAAGGTGATGCGGGATCCTAATGGAACAAGCAAAGGCTC 1424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTTTGGTACCGTTACATCTTGCAAGGTGATGCGGGATCCTAATGGAACAAGCAAAGGCTC 1079
Query 1425 AGGTTTTGTTGCTTTCGCAACTCCCGAAGAAGCAACTGAAGCTATGTCACAGTTGAGCGG 1484
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 AGGTTTTGTTGCTTTCTCAACTCCCGAAGAAGCAACCGAAGCTATGTCACAGTTGAGCGG 1139
Query 1485 TAAAATGATCGAAAGCAAGCCACTCTATGTGGCTATTGCACAGCGGAAGGAAGACAGAAG 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAAAATGATCGAAAGCAAGCCACTCTATGTGGCTATTGCACAGCGGAAGGAAGACAGAAG 1199
Query 1545 GGTCAGACTACAGGCTCAGTTTTCCCAAGTGAGGCCAGTTGCAATGCAGCCGTCTGTTGG 1604
|| | | ||| | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1200 GG-C----T-CAG--T---TTT-CCCAAGTGAGGCCAGTTGCAATGCAGCCGTCTGTTGG 1247
Query 1605 TCCCCGCATGCCAGTGTATCCCCCGGGTGGTCCTGGTATTGGACAACAAATGTTCTATGG 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TCCCCGCATGCCAGTGTATCCCCCGGGTGGTCCTGGTATTGGACAACAAATGTTCTATGG 1307
Query 1665 TCAGGCCCCTCCTGCCATGATTCCTCCCCAGCCTGGGTATGGATACCAACAGCAGCTTGT 1724
||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1308 TCAGGGCCCTCCTACCATGATTCCTCCCCAGCCTGGGTTTGGGTACCAACAGCAGCTTGT 1367
Query 1725 TCCTGGAATGAGACCTGGTGGGGGTCCTGTACCCAGTTTCTTCATGCCTATGGTTCAGCC 1784
|||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 1368 TCCTGGAATGAGACCTGGTGGGGGCCCTGGACCCAATTTCTTCATGCCTATGGTTCAGCA 1427
Query 1785 ACAGCAGCAGCGTCCTGGAGGAGGAAGACGTCCTGGGGGAATCCAACACTCCCAGCAGCA 1844
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1428 ACAGCAGCAGCGTCCTGGGGGAGGAAGACGTCCTGGGGGAATCCAACACCCCCAGCAGCA 1487
Query 1845 AAATCCCATGATGCAGCAACAGATGCATCCAAGGGGTCGGATGTTCCGGTATCCCCAAGG 1904
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1488 AAATCCCATGATGCAGCAACAGATGCATCCAAGGGGTCGGATGATCCGGTATCCCCAAGG 1547
Query 1905 GCGTGGTGGTAGTGGTGATGTGCCTCCATATGATATGGGCAACAACATGCCATTGACTAT 1964
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1548 ACGTGGTGGTAGTGGTGAGGTGCCTCCATATGATATGGGCAACAACATGCCATTGCCTAT 1607
Query 1965 TGGAGCTTTGGCTTCAAATCTGTCTAATGCTACTCCAGAGCAACAGAGGACGATGCTGGG 2024
||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1608 TGGGGCTTTGGCTTCACATCTGGCTAATGCTTCTCCAGAGCAACAGAGGACGATGCTGGG 1667
Query 2025 TGAG-GTGCTGTACCCGTTGGTGGAGCAGGTTGAGGCAGAGTCTGCAGCCAAAGTGACTG 2083
|||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1668 TGAGAGT-CTGTACCCGTTGGTGGAGCAGCTTGAGGCAGAGTCTGCAGCCAAAGTGACTG 1726
Query 2084 GGATGCTTTTGGAGATGGACCAGACTGAAGTGCTCCATCTGTTGGAGTCACCAGAAGCTC 2143
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1727 GGATGCTTTTGGAGATGGACCAGACTGAAGTGCTCCATCTATTGGAGTCACCAGAAGCTC 1786
Query 2144 TCAAGGCCAAAGTTGCAGAGGCTATGGATGTTCTCAGGAGTGTCGCTGCTGGTGGTGCAA 2203
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1787 TCAAGGCCAAAGTTGCAGAGGCTATGGATGTTCTCAGGAGCGTCGCTGCTGGTGGTGCAG 1846
Query 2204 CCGAGCAGCTCGCTTCCTTGAACCTCTCTTAA 2235
||||||||||||||||||||||||||||||||
Sbjct 1847 CCGAGCAGCTCGCTTCCTTGAACCTCTCTTAA 1878
> Ahg931277 jgi|Araly1|931277|scaffold_303734.1
Length=2011
Score = 1426 bits (772), Expect = 0.0
Identities = 1266/1501 (84%), Gaps = 47/1501 (3%)
Strand=Plus/Plus
Query 439 CAGTTTGGTAAC-ACGTCGCTTTATGTGGGGGATCTCGATTTC-AATGTGACGGACTCGC 496
||||||||| || || |||||||| || || ||||| || | | || |||||||| ||||
Sbjct 128 CAGTTTGGT-ACTACATCGCTTTACGTTGGAGATCTGGA-TCCAAACGTGACGGATTCGC 185
Query 497 AGCTTTTCGATGCGTTTGGCCAAATGGGTAC-TGTGGTCA-CCGTTCGTGTCTGTAGGGA 554
||||||| ||||||||| |||| |||||| | || || | | ||||| || ||||| ||
Sbjct 186 AGCTTTTTGATGCGTTTAGCCAGATGGGT-CAAGTTGT-ATCAGTTCGAGTTTGTAGAGA 243
Query 555 TTT-GGTCACTCGCCGATCTCTTGGCTATGGATACGTTAACTTCACCAATCCCCAAGACG 613
||| | | ||||| |||||||||| ||||| || ||||||||||||| ||| ||||| |
Sbjct 244 TTTAGCT-ACTCGGAGATCTCTTGGTTATGGTTATGTTAACTTCACCAGTCCTCAAGATG 302
Query 614 CTGCAAGAGCGATCCAAGAACTGAATTACATACCTCTTTATGGAAAACCTATTAGGGTTA 673
|||||||||||||||| |||||||| || ||||||||| |||| |||||| |||||||||
Sbjct 303 CTGCAAGAGCGATCCAGGAACTGAACTATATACCTCTTAATGGGAAACCTGTTAGGGTTA 362
Query 674 TGTATTCTCATCGTGATCCTAGTGTTCGCCGAAGTGGCGCTGGCAACATTTTTATTAAGA 733
|||||||||||||||||||||||||||| |||||||| || || || |||||||| ||||
Sbjct 363 TGTATTCTCATCGTGATCCTAGTGTTCGTCGAAGTGGTGCAGGAAATATTTTTATCAAGA 422
Query 734 ATTTGGACGAGTCCATCGACCACAAAGCACTGCATGATACTTTTTCA-TCGTTTGGAAAC 792
|||||||| | ||||| ||||||||||| |||||||||| ||||| | |||||| |||
Sbjct 423 ATTTGGACAAATCCATTGACCACAAAGCGTTGCATGATACGTTTTCTGT-GTTTGGGAAC 481
Query 793 ATTGTGTCGTGCAAGGTAGCTGTCGATTCTTCAGGCCAGTCAAAAGGCTATGGGTTTGTG 852
||| | ||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 482 ATTATCTCGTGCAAGGTAGCTGTGGATTCTTCAGGACAATCAAAAGGCTATGGGTTTGTG 541
Query 853 CAATACGCCAA-TGAAGAATCTGCCCAGAAAGCTATAGAGA-AACTGAACGGCATGTTGC 910
||||| | || |||||||||||| ||||||||||| | | || ||||||| |||||||
Sbjct 542 CAATATGA-AACTGAAGAATCTGCTCAGAAAGCTATGG-GTCAATTGAACGGTATGTTGC 599
Query 911 TCAATGACAAGCAAGTGTATGTGGGTCCTTTCCTGAGGAGACAAGAAAGAGACTCCACTG 970
| |||||||||||||||||||| || |||||||| ||||| ||||||||||| || ||||
Sbjct 600 TAAATGACAAGCAAGTGTATGTTGGACCTTTCCTCAGGAGGCAAGAAAGAGATTCTACTG 659
Query 971 CTAACAAAACGAA-ATTCACCAATGTGTATGTGAAGAATCTCGCGGAAAGTACTACCGAT 1029
||||||||| || ||||||||| ||||||||||||||||| || ||| || || |||
Sbjct 660 GTAACAAAAC-AATATTCACCAACGTGTATGTGAAGAATCTTGCTGAATCAACCACTGAT 718
Query 1030 GATGACTTGAAGAATGCTTTTGGCGAGTATGGAAAGATAACAAGTGCTGTCGTGATGAAA 1089
||||| |||||||| |||||| |||| ||| ||||||||||||||||| |||||||||
Sbjct 719 GATGATTTGAAGAACATTTTTGGTGAGTTTGGTAAGATAACAAGTGCTGTGGTGATGAAA 778
Query 1090 GATGGAGAAGGGAAGTCCAA-GGGCTTTGGGTTTGTCAACTTTGAAAATGCTGATGATGC 1148
|||||||| |||||| |||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 779 GATGGAGAGGGGAAG-CCAAAGGGCTTTGGGTTTGTTAACTTTGAAAATGCCGATGATGC 837
Query 1149 TGCTAGGGCTGTGGAGTCTCTCAATGGGCACAA-ATTTGATGATAAGGAGTGGTATGTTG 1207
||||| ||||||||||||||||||||| | || |||||| ||||||||||||| |||||
Sbjct 838 TGCTAAGGCTGTGGAGTCTCTCAATGGAAA-AACATTTGAGGATAAGGAGTGGTTTGTTG 896
Query 1208 GTAGAGCCCAGAAGAAGTCAGAGAGGGAAACAGAATTAAGGGTCC-GTTATGAACAGAAT 1266
||||||||||||||||||| || ||||||| ||| ||| ||| | || |||| |||| |
Sbjct 897 GTAGAGCCCAGAAGAAGTCTGAAAGGGAAATGGAACTAAAGGTTCAGT-ATGAGCAGAGT 955
Query 1267 TTGAAGGAAGCTGCAGACAAGTTTCAAAGTTCAAACTTGTATGTTAAGAATTTGGATC-C 1325
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 956 TTGAAGGAAGCTGCTGACAAGTTTCAAAGTTCTAACTTGTATGTTAAGAATTTAGATGAC 1015
Query 1326 TAGCATTTCAGATGAGAAACTTAAAGAGATCTTTTCTCCTTTTGGTACCGTTACATCTAG 1385
|| |||| || |||||||| |||||| ||||| | |||| ||| || ||||| ||| |
Sbjct 1016 -AGTGTTTCTGACGAGAAACTCAAAGAGCTCTTTACACCTTATGGCACTGTTACGTCTTG 1074
Query 1386 CAAGGTGATGCGGGATCCTAATGGAACAAGCAAAGGCTCAGGTTTTGTTGC-TTTCGCAA 1444
|||||||||||||||||||||||| | ||||| ||||| |||||||| || ||| |||
Sbjct 1075 CAAGGTGATGCGGGATCCTAATGGCATAAGCAGGGGCTCGGGTTTTGTAGCATTTT-CAA 1133
Query 1445 CTCCCGAAGAAGCAACTGAAGCTATGTCACAGTTGAGCGGTAAAATGATCGAAAGCAAGC 1504
|||| ||||||||||| ||||||||||| || |||| ||||||||||| |||| ||| |
Sbjct 1134 CTCCTGAAGAAGCAACCAAAGCTATGTCAGAGATGAGTGGTAAAATGATTGAAAACAAAC 1193
Query 1505 CACTCTATGTGGCTATTGCACAGCGGAAGGAAGACAGAAGGGTCAGACTACAGGCTCAGT 1564
| |||||||| ||| |||| ||| | ||||| || ||||||| |||||| ||||||||||
Sbjct 1194 CTCTCTATGTTGCTGTTGCTCAGAGAAAGGAGGATAGAAGGGCCAGACTGCAGGCTCAGT 1253
Query 1565 TTTCCCAAGTGAGGCCAGTTGCAATGCAGCCGTCTGTTGGTCCCCGCATGCCAGTGTATC 1624
|||||||| |||| |||||||||||||| || | |||||||| || |||||| | ||||
Sbjct 1254 TTTCCCAAATGAGACCAGTTGCAATGCAACCACCGGTTGGTCCTCGTATGCCAATTTATC 1313
Query 1625 CCCCGGGTGGTCCTGGTATTGGACAACAAATGTTCTATGGTCAGGCCCCTCCTGCCATGA 1684
|||| |||||||| || |||||||||| |||||| ||||||||||| |||||| | ||||
Sbjct 1314 CCCCTGGTGGTCCCGGAATTGGACAACCAATGTTTTATGGTCAGGCACCTCCTACTATGA 1373
Query 1685 TTCCTCCCCAGCCTGGGTATGGATACCAACAGCAGCTTGTTCCTGGAATGAGACCTGGTG 1744
|| || | ||||| |||| ||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 1374 TTTCTTCACAGCCCGGGTTTGGCTACCAGCAGCAGCTGGTTCCTGGAATGAGACCTGGTG 1433
Query 1745 GGGGTCCTGTACCCAGTTTCTTCATGCCTATGGTTCAGCCACAGC-AGCAGCGTCCTGGA 1803
| || || | | || ||||||||||| |||||||||| | || |||| |||||||||
Sbjct 1434 GAGGACCAATGCACAACTTCTTCATGCCAATGGTTCAGC-AGGGCCAGCAACGTCCTGGA 1492
Query 1804 GGAGGAAGACGTCCTGG-GGGAATCCAACACTCCCAGCAGCA--A--AA-T-CCCATGAT 1856
|| | | |||||||||| |||| |||| || || |||||||| | || | ||||||||
Sbjct 1493 GG-G-A-GACGTCCTGGAGGGA-TCCAGCAATCTCAGCAGCAGCAGCAAGTTCCCATGAT 1548
Query 1857 GCAGCA--A-CA---GATGCATCCAAGGGGTCGGATGTTCCGGTATCCCCAAGGGCGTGG 1910
|||||| | || |||||| ||||||||||| |||||||| ||||| ||||| |||||
Sbjct 1549 GCAGCAGCAACACCAGATGCACCCAAGGGGTCGAATGTTCCGCTATCCTCAAGGCCGTGG 1608
Query 1911 T 1911
|
Sbjct 1609 T 1609
> Ahg932329 jgi|Araly1|932329|scaffold_400317.1
Length=2014
Score = 307 bits (166), Expect = 2e-82
Identities = 784/1075 (73%), Gaps = 71/1075 (7%)
Strand=Plus/Plus
Query 699 TCGCCGAAGTGGCGCTGGCAACATT-TTTATTAAGAATTTGGACGAGTCCA-TCGACCAC 756
|||| ||||||| | ||| || || ||| | ||||||||||| ||| || | || ||
Sbjct 395 TCGCAGAAGTGGTGTTGGGAA-TTTGTTTGTAAAGAATTTGGATAAGT-CAGTTGATAAC 452
Query 757 AAAGCACTGCATGATACTTTTTCATCGTTTGGAAAC-ATTGTGTCGTGCAAGGTAGCTGT 815
||| | ||||| || || ||||| || ||| || |||||||| || ||||| ||||
Sbjct 453 AAAACTCTGCACGAGACGTTTTCCGGGTGTGG-GACGATTGTGTCCTGTAAGGTTGCTG- 510
Query 816 C-GATTC-T-TCAGGCCAGTCAAAAGGCTATGGGTTTGTGCAATACGCCAATGAAGAATC 872
| || || | | || ||||| | ||| |||||||||||||| | | | ||| || ||
Sbjct 511 CTGA-TCATAT-GGGTCAGTCTAGAGGATATGGGTTTGTGCAGTTTGATACTGAGGATTC 568
Query 873 TGCCCAGAAAGCTATAGAGAAACTGAACGGC-ATGTTGCTCAATGACAAGCAAG-TGTAT 930
|| |||| ||||| ||||| ||||| ||| | | || | |||||||| | || | | |
Sbjct 569 AGCTAAGAATGCTATTGAGAAGCTGAATGGCAAAG-TGTTGAATGACAAAC-AGAT-TTT 625
Query 931 -GTGGGTCCTTTCCTGAG-GAGACAAGAAAGAGACTCCACTGCTAACAAAACGAAATTCA 988
|| || ||||| || | || | |||||||| || ||||| | || | ||| || |
Sbjct 626 CGTTGGACCTTTTCTCCGTAAG-GAGGAAAGAGAGTCTGCTGCTGATAAGATGAAGTTTA 684
Query 989 CCAATGTGTATGTGAAGAATCTCG-CGGAAAG-TACTACCGATGATGACTTGAAGAATGC 1046
||||||| |||||||||||||| | ||| | | ||||| |||||||| ||||||| | |
Sbjct 685 CCAATGTTTATGTGAAGAATCT-GTCGG-AGGCGACTACTGATGATGAGTTGAAGACTAC 742
Query 1047 TTTTGG-CGAGTATGGAAAG-ATAACAAGTGCTGTCGTGATGAAAGATGGAGAAGGGAAG 1104
|||||| | ||||||| || || | || ||||| || |||| || ||||| |||||
Sbjct 743 TTTTGGTC-AGTATGG-TAGTATTTCGAGCGCTGTGGTTATGAGGGACGGAGATGGGAAA 800
Query 1105 TCCAAGG-GCTTTGGGTTTGTCAACTTTGAAAATGCTGATGATGCTGCTAGGGCTG-TGG 1162
| | ||| | ||||| |||||||||||||| ||| |||| |||||||| | |||| ||
Sbjct 801 T-CTAGGTGTTTTGGATTTGTCAACTTTGAGAATCCTGAAGATGCTGCCCGTGCTGTTGA 859
Query 1163 AGTCTCTCAATGGGCACAAATTTGATGATAAGGAGTGGTATGTTGGTAGAGCCCAGAAGA 1222
|| |||| || || | || |||||||||||||||||||||||||||| ||| |||||||
Sbjct 860 AG-CTCTTAACGGAAAGAAGTTTGATGATAAGGAGTGGTATGTTGGTAAAGCTCAGAAGA 918
Query 1223 AGTCAGAGAGGGAAACA-GAATTAAGG-GTCCGTTATGAACAGAATTTGAAG-GAAGCTG 1279
| || ||||||||| | || || || | | |||||||| | | ||| || || |
Sbjct 919 AATCTGAGAGGGAA-CTTGAGTTGAGCCGAA-GATATGAACA-AGGCTCAAGTGATGCAG 975
Query 1280 CAGACAAGTTTCAAAG-TTCAAACTTGTATGTTAAGAAT-TTGGATCCTAGCATTTCAGA 1337
| |||||||| | | || || || |||||||| || ||| || || | | | ||
Sbjct 976 GAAACAAGTTTGATGGGTTGAAT-TTATATGTTAAAAACCTTG-ATGATACCGTCACCGA 1033
Query 1338 TGAGAAACTTAAA-GAGATCTTTTCTCCTTTTGGTACCGTTACATCTAGCAAGGTGATGC 1396
||| ||| || ||| | ||| || |||||||| |||| ||| ||||||| ||||
Sbjct 1034 TGA-AAAGTTGCGTGAGTTGTTTGCTGAATTTGGTACAATTACGTCTTGCAAGGTTATGC 1092
Query 1397 GGGATCCTAATGGAACAAGCAAAGGCTCAGGTTTTGTTGCTTTCGCAACTCCC-GAAGAA 1455
|||| |||| ||| || |||||||| ||||| |||||||| ||| | || || | |||
Sbjct 1093 GGGACCCTAGTGGTACTAGCAAAGGATCAGGATTTGTTGCCTTCTCTGCTGCCAGT-GAA 1151
Query 1456 GCAACT-GAA-GCT-A-TGTCACAGTTGAGCGGTAAAATGATCGAAAGCAAGCCACTCTA 1511
|| || || ||| | || | | | || ||||||||| | | | || ||| | ||
Sbjct 1152 GCTTCTAGAGTGCTGAATGA-A-A-T-GAATGGTAAAATGGTTGGTGGTAAACCATTGTA 1207
Query 1512 TGTGGCTATTGCACAGCGGAAGGAAGACAGAAGGG-TCAGACTACAGGCTCAGTTTTCCC 1570
||| ||| |||||||| |||| ||||| ||||||| | || || |||||||||||||| |
Sbjct 1208 TGTCGCTCTTGCACAGAGGAAAGAAGAAAGAAGGGCTAAG-CTGCAGGCTCAGTTTTCTC 1266
Query 1571 AAGTGAGGCCAG-TTGCAATGCAGCCGTCTGTTGGTCCCCGCATGCCAGTGTATCCCCCG 1629
|| |||| || | || | | | ||| ||| ||||| || |||||| | | ||| |
Sbjct 1267 AAATGAGACCTGCTTTTA-TCC--CCGG-TGTGGGTCCTCGAATGCCAATATTTCCAG-G 1321
Query 1630 -GGTGGTCCTGGTATTGGACAACAAATGTTCTATGGTCA-GGCCCCTCCTGCCA-TGATT 1686
|||| ||| ||| |||||||||| || || || ||||| || || ||| ||| | ||
Sbjct 1322 TGGTGCTCCAGGTCTTGGACAACAGATCTTTTACGGTCAAGGGCC-TCCA-CCAATCATC 1379
Query 1687 CCTCCCCAGCCTGGGTAT-GGATACCAA-CAGCAGCTTGTTCCTGGAATGAGACC 1739
|||| ||||||||| | | || || || | ||||| ||||||||| |||||||
Sbjct 1380 CCTCACCAGCCTGGAT-TCGGTTATCAGTCT-CAGCTGGTTCCTGGATTGAGACC 1432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91987941675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5