BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34131.1
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888666 jgi|Araly1|888666|Al_scaffold_0007_652 2180 0.0
Ahg491260 jgi|Araly1|491260|fgenesh2_kg.7__693__AT4G34135.1 1725 0.0
> Ahg888666 jgi|Araly1|888666|Al_scaffold_0007_652
Length=1449
Score = 2180 bits (1180), Expect = 0.0
Identities = 1362/1451 (94%), Gaps = 7/1451 (0%)
Strand=Plus/Plus
Query 106 ATGAGTAGTGATCCTCATCGTAAGCTCCATGTTGTGTTCTTCCCTTTCATGGCTTATGGT 165
||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGGTAGTAATCCTCATCGTAAGCTCCATGTTATGTTCTTCCCTTTCATGGCTTATGGC 60
Query 166 CACATGATACCAACTCTAGACATGGCTAAGCTTTTCTCTAGCAGAGGAGCCAAATCTACA 225
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACCTGATACCAACTTTAGACATGGCTAAGCTTTTCTCTAGCAGAGGAGCCAAATCTACA 120
Query 226 ATCCTCACCACACCTCTCAACTCCAAGATCTTCCAAAAACCCATCGAAAGATTCAAGAAC 285
|||||||||||||||||||||||||||||| | |||||||| ||||| | ||||||||||
Sbjct 121 ATCCTCACCACACCTCTCAACTCCAAGATCCTACAAAAACCAATCGACACATTCAAGAAC 180
Query 286 CTGAATCCGAGT-TTCGAAATCGACATCCAGATCTTCGATTTCCCTTGCGTGGATCTCGG 344
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CTGAATCCGAGTCTT-GAAATCGACATCCAGATCTTCGATTTCCCTTGCGTGGAGCTCGG 239
Query 345 GTTACCAGAAGGATGCGAAAACGTCGATTTCTTCACCTCAAACAACAATGATGATAGACA 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTACCAGAAGGATGCGAAAACGTCGATTTCTTCACCTCAAACAACAATGATGATAGACA 299
Query 405 GTATCTGACCTTGAAGTTCTTTAAGTCGACAAGGTTTTTCAAAGATCAGCTTGAGAAGCT 464
|||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 300 GTATCTGACCTTGAAGTTCTTTCTGTCGACGAGGTTTTTCAAAGACCAGCTTGAGAAGCT 359
Query 465 CCTCGAGACAACGAGACCAGACTGTCTTATCGCCGACATGTTCTTCCCCTGGGCTACGGA 524
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 360 CCTCGAGACAACGAGGCCGGACTGTCTTATCGCCGACATGTTCTTCCCATGGGCTACTGA 419
Query 525 AGCTGCTGAGAAGTTCAATGTGCCAAGACTTGTGTTCCACGGTACTGGCTACTTT-TCTT 583
||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 420 AGCTGCTGAAAAGTTGAATGTGCCAAGACTTGTGTTCCACGGCACTGGCTA-TTTCTCTT 478
Query 584 TATGCTCTGAATATTGCATCAGAGTGCATAACCCACAAAACATAGTAGCTTCAAGGTACG 643
||||||| |||||||||||||| ||||||||||||||||||| ||||||||| || | |
Sbjct 479 TATGCTCCGAATATTGCATCAGGGTGCATAACCCACAAAACACAGTAGCTTCGAGTTGTG 538
Query 644 AGCCATTTGTGATTCCTGATCTCCCGGGGAACATAGTGATAACTCAAGAACAGATAGCAG 703
||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct 539 AGCCATTTGTGATTCCTGATCTCCCTGGGAACATAGTGATAACAAAAGAACAGATCGCAG 598
Query 704 ACCGTGACGAAGAAAGCGAGATGGGGAAGTTTATGATTGAGGTCAAAGAATCTGATGTGA 763
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACCGTGACGAAGAAAGAGAGATGGGGAAGTTTATGATTGAGGTCAAAGAATCTGATGTGA 658
Query 764 AGAGCTCAGGTGTTATTGTAAACAGCTTCTACGAGCTTGAACCTGATTACGCCGACTTTT 823
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 659 AGAGCTCTGGTGTTATTGTGAACAGCTTTTACGAGCTTGAACCTGATTACGCCGATTTTT 718
Query 824 ACAAGAGTGTTGTACTGAAGAGAGCGTGGCATATCGGTCCGCTTTCGGTTTACAACAGAG 883
|||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 719 ACAAGAGTGTTGTAGTGAAGAGAGCATGGCATATCGGTCCGCTCTCGGTTTACAACAGAG 778
Query 884 GATTTGAGGAGAAGGCTGAGAGAGGAAAGAAAGCAAGCATTAATGAGGTTGAATGCCTCA 943
| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 779 GGTTTGAGGAGAAGGCTGAGAGAGGAAAGAAAGCAAGCATTGATGAAGTTGAATGCCTCA 838
Query 944 AATGGCTTGACTCCAAGAAACCAGATTCAGTCATTTACATTTCTTTTGGGAGCGTGGCTT 1003
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 AATGGCTTGACTCCAAGAAACCAGATTCAGTCATTTACATTTCCTTTGGGAGCGTGGCTT 898
Query 1004 GCTTCAAGAACGAGCAGCTATTCGAGATCGCTGCAGGATTAGAAACTTCTGGAGCAAATT 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCTTCAAGAACGAGCAGCTATTCGAGATCGCTGCAGGATTAGAAACTTCTGGAGCAAATT 958
Query 1064 TCATCTGGGTTGTTAGGAAAAACATAGGTATTGAAAAAGAAGAATGGTTACCAGAAGGGT 1123
| |||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 959 TTATCTGGGTTGTTAGGAAAAACACAGGTAATGACAAAGAAGAATGGTTACCAGAAGGGT 1018
Query 1124 TCGAAGAGAGGGTGAAAGGAAAAGGGATGATTATAAGAGGATGGGCACCACAGGTGCTCA 1183
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |
Sbjct 1019 TTGAAGAGAGGGTGAAAGGGAAAGGGATGATAATAAGAGGATGGGCACCACAGGTACTGA 1078
Query 1184 TACTTGATCATCAAGCAACTTGTGGGTTTGTGACCCATTGCGGCTGGAACTCGCTTCTGG 1243
|||| || ||||||||||| ||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1079 TACTAGACCATCAAGCAACCGGTGGGTTCGTGACTCATTGCGGCTGGAACTCGCTTCTTG 1138
Query 1244 AAGGAGTGGCTGCAGGGCTACCAATGGTGACATGGCCTGTAGCAGCGGAGCAATTCTACA 1303
||||||||||||| |||||||| |||||||||||||| || | |||||||||||||||||
Sbjct 1139 AAGGAGTGGCTGCTGGGCTACCGATGGTGACATGGCCGGTTGGAGCGGAGCAATTCTACA 1198
Query 1304 ATGAGAAATTGGTTACGCAAGTGCTCAGAACAGGAGTGAGCGTGGGAGCGAAAAAGAATG 1363
| |||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||
Sbjct 1199 ACGAGAAATTGGTTACGCAAGTTCTTAGAACAGGAGTGAGCGTGGGAGCTAAAAAGCATG 1258
Query 1364 TAAGAACTACGGGAGATTTCATTAGCAGAGAGAAAGTGGTTAAAGCGGTGAGGGAGGTGT 1423
|||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1259 TAAGGACTACGGGAGATTTCATTAGCAGAGAGAAAGTGGATAAAGCAGTGAGGGAGGTGT 1318
Query 1424 TGGTTGGGGAAGAGGCGGATGAGAGGCGGGAGAGGGCAAAGAAGTTGGCAGAGATGGCTA 1483
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1319 TGGTTGGGGAAGAGGCGGATGAGAGGCGGGAGCGGGCAAAGAAGCTGGCAGAGATGGCTA 1378
Query 1484 AAGCTGCCGTGGAAG--G-AGGGTCTTCTTTCAACGATCTAAACAGCTTCATAGAAGAGT 1540
|||||||||||||| | |||||||||||| || || ||||||| ||||||||||||||
Sbjct 1379 CAGCTGCCGTGGAAGAAGGAGGGTCTTCTTTTAATGAGCTAAACAACTTCATAGAAGAGT 1438
Query 1541 TTACCTCGTAA 1551
|||||||||||
Sbjct 1439 TTACCTCGTAA 1449
> Ahg491260 jgi|Araly1|491260|fgenesh2_kg.7__693__AT4G34135.1
Length=1662
Score = 1725 bits (934), Expect = 0.0
Identities = 1305/1482 (88%), Gaps = 33/1482 (2%)
Strand=Plus/Plus
Query 81 attttcttttCGATCAAAGTCAAACATGAGTAGTG---ATCCTCATCGTAAGCTCCATGT 137
||||||||||| | | |||||| |||| |||||| ||| |||||| |||||||||||
Sbjct 69 ATTTTCTTTTC-AAC-CAGTCAATCATGGGTAGTGACCATCATCATCGAAAGCTCCATGT 126
Query 138 TGTGTTCTTCCCTTTCATGGCTTATGGTCACATGATA-CCAACTCTAGACATGGCTAAGC 196
| ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 127 TATGTTCTTCCCTTTCATGGCTTATGGCCACATGATACCCAACTCTAGATATGGCTAAGC 186
Query 197 TTTTCTCTAGCAGAGGAGCCAAATCTACAATCCTCACCACACCTCTCAACTCCAAGATCT 256
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 187 TTTTCTCTAGCAGAGGAGCCAAATCCACAATCCTCACCACACCTCTCAACTCCAAGATCC 246
Query 257 TCCAAAAACCCATCGAAAGATTCAAGAACCTGAATCCGAGTTTCGAAATCGACATCCAGA 316
|||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||
Sbjct 247 TCCAAAAACCCATCGACACATTCAAGAACCTGAATCCGAGTCTCGAAATCGAGATCCAGA 306
Query 317 TCTTCGATTTCCCTTGCGTGGATCTCGGGTTACCAGAAGGATGCGAAAACGTCGATTTCT 376
|||||||||| |||||||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct 307 TCTTCGATTTTTCTTGCGTGGAGCTCGGGTTACCTGAAGGATGTGAAAACGTAGATTTCT 366
Query 377 TCACCTCAAACAACAATGATGATAGACA-GTATCTGACCTTGAAGTTCTTTAAGTCGACA 435
|||| ||||||||||||||||||||| | | | ||| | |||| |||||| ||||||
Sbjct 367 TCACTTCAAACAACAATGATGATAGAAACG-AGATGATCGTGAAATTCTTTTTTTCGACA 425
Query 436 AGGTTTTTCAAAGATCAGCTTGAGAAGCTCCTCGAGACAACGAGACCAGACTGTCTTATC 495
|||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 426 AGGTTTTTGAAAGACCAGCTTGAGAAACTCCTTGAGACAACGAGACCAGACTGTCTTATC 485
Query 496 GCCGACATGTTCTTCCCCTGGGCTACGGAAGCTGCTGAGAAGTTCAATGTGCCAAGACTT 555
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 486 GCCGACATGTTCTTCCCCTGGGCTACTGAAGCTGCTGGGAAGTTCAATGTGCCAAGACTT 545
Query 556 GTGTTCCACGGTACTGGCTACTTTTCTTTATGCTCTGAATATTGCATCA-GAGTGCATAA 614
||||||||||| ||||||||||| ||||||||| ||| |||||||| | ||||||||||
Sbjct 546 GTGTTCCACGGCACTGGCTACTTCTCTTTATGCGCTGGTTATTGCAT-AGGAGTGCATAA 604
Query 615 CCCACAAAACATAGTAGCTTCAAGGTACGAGCCATTTGTGATTCCTGATCTCCCGGGGAA 674
||||| || | ||| |||||||| | ||||||||||||||||| || ||||| |||||
Sbjct 605 ACCACAGAAGAGAGTGGCTTCAAGCTGTGAGCCATTTGTGATTCCCGAGCTCCCTGGGAA 664
Query 675 CATAGTGATAACTCAAGAACAGAT-AGCAGACCGTGACGAAGAAAGC-GAGATGGGGAAG 732
|||||||||||| |||||||||| | ||| | || | | || | || ||||| |||
Sbjct 665 TATAGTGATAACTGAAGAACAGATCA-TAGATGGCGATG-GGGAATCTGACATGGGAAAG 722
Query 733 TTTATGATTGAGGTCAAAGAATCTGATGTGAAGAGCTCAGGTGTTATTGTAAACAGCTTC 792
||||||| ||| || | ||||| || ||||| |||||||| ||| |||| || || |||
Sbjct 723 TTTATGACTGAAGTTAGGGAATCAGAAGTGAACAGCTCAGGAGTTGTTGTGAATAGTTTC 782
Query 793 TACGAGCTTGAACCTGATTACGCCGACTTTTACAAGAG-TGTTGTACTGAAGAGAGCGTG 851
|||||||| |||| |||||| ||| | |||||||| || || ||||| |||||||||||
Sbjct 783 TACGAGCTAGAACATGATTATGCCAATTTTTACAAAAGTTG-TGTACAAAAGAGAGCGTG 841
Query 852 GCATATCGGTCCGCTTTCGGTTTACAACAGAGGATTTGAGGAGAAGGCTGAGAGAGGAAA 911
|||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 842 GCATATCGGTCCTCTCTCGGTTTACAACAGAGGATTTGAGGAGAAGGCTGGGAGAGGAAA 901
Query 912 GAAAGC-AAGCATTAATGAGGTTGAATGCCTCAAATGGCTTGACTCCAAGAAACCAGATT 970
|||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 902 GAAAGCGAA-CATTGATGAGGCTGAATGCCTCAAATGGCTTGACTCCAAGAAACCAGATT 960
Query 971 CAGTCATTTACATTTCTTTTGGGAGCGTGGCTTGCTTCAAGAACGAGCAGCTATTCGAGA 1030
|||||||||| |||| |||||||||||||||| ||||||||| |||||| |||||||||
Sbjct 961 CAGTCATTTATGTTTCCTTTGGGAGCGTGGCTTTCTTCAAGAATGAGCAGTTATTCGAGA 1020
Query 1031 TCGCTGCAGGATTAGAAACTTCTGG-AGCAAATTTCATCTGGGTTGTTAGGAAAAACATA 1089
|||||||||| |||||| |||| || | ||| |||||||||||||||||||||| || |
Sbjct 1021 TCGCTGCAGGGTTAGAAGCTTCCGGCA-CAAGTTTCATCTGGGTTGTTAGGAAAGCCACA 1079
Query 1090 GGTATTGAAAAAGAAGAATGGTTACCAGAAGGGTTCGAAGAGAGGGTGAAAGGAAAAGGG 1149
| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1080 G--AT-GACAAAGAAGAATGGTTACCAGAAGGGTTCGAAGAGAGGGTGAAAGGGAAAGGG 1136
Query 1150 ATGATTATAAGAGGATGGGCACCACAGGTGCTCATACTTGATCATCAAGCAACTTGTGGG 1209
||||| |||||||||||||| || || || || |||||||| || |||||||| |||||
Sbjct 1137 ATGATAATAAGAGGATGGGCTCCTCAAGTTCTGATACTTGACCACCAAGCAACCGGTGGG 1196
Query 1210 TTTGTGACCCATTGCGGCTGGAACTCGCTTCTGGAAGGAGTGGCTGCAGGGCTACCAATG 1269
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1197 TTCGTGACCCATTGCGGCTGGAACTCGCTTCTTGAAGGAGTGGCTGCAGGGCTACCGATG 1256
Query 1270 GTGACATGGCCTGTAGCAGCGGAGCAATTCTACAATGAGAAATTGGTTACGCAAGTGCTC 1329
||||||||||| |||| |||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1257 GTGACATGGCCGGTAGGAGCGGAGCAATTCTACAACGAGAAATTGGTTACACAAGTGCTC 1316
Query 1330 AGAACAGGAGTGAGCGTGGGAGCGAAAAAGAATGT-AAGA--ACT-ACGGGAGATTTCAT 1385
|||||||||||||||||||||||||||| | |||| ||| | | | ||||||||||||
Sbjct 1317 AGAACAGGAGTGAGCGTGGGAGCGAAAAGGCATGTGAAGGTTA-TGATGGGAGATTTCAT 1375
Query 1386 TAGCAGAGAGAAAGTGGTTAAAGCGGTGAGGGAGGTGTTGGTTGGGGAAGAGGCGGATGA 1445
||||||||||||||||| |||||||||||||||||| || | |||||||| ||| || ||
Sbjct 1376 TAGCAGAGAGAAAGTGGATAAAGCGGTGAGGGAGGTTTTTGCTGGGGAAGCGGCAGAGGA 1435
Query 1446 GAGGCGGGAGA-GGGCAAAGAAGTTGGCAGAGATGGCTAAAGCTGCCGTGGAAG--G-AG 1501
||||||| || ||||||||||| |||| | |||||||||||| || ||||||| | ||
Sbjct 1436 GAGGCGG-AGGCGGGCAAAGAAGCTGGCGGCGATGGCTAAAGCCGCGGTGGAAGAAGGAG 1494
Query 1502 GGTCTTCTTTCAACGATCTAAACAGCTTCATAGAAGAGTTTA 1543
||||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct 1495 GGTCTTCCTTCAATGATCTAAACAGTTTCATGGAAGAGTTTA 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66124665320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5