BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34138.1
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944501 jgi|Araly1|944501|scaffold_700730.1 2344 0.0
> Ahg944501 jgi|Araly1|944501|scaffold_700730.1
Length=1510
Score = 2344 bits (1269), Expect = 0.0
Identities = 1433/1513 (95%), Gaps = 7/1513 (0%)
Strand=Plus/Plus
Query 105 TGA-TTTCTCATCAGTTAAACATGGGAAC-TCCTGTCGAAGTCTCTAAGCTCCATTTCTT 162
||| ||||||||||| |||||||||||| ||| | | ||||||||||||||||||||||
Sbjct 1 TGATTTTCTCATCAGCCAAACATGGGAACTTCC-GGCAAAGTCTCTAAGCTCCATTTCTT 59
Query 163 GCTCTTCCCTTTCATGGCTCATGGCCATATGATACCAACTCTAGACATGGCTAAGCTCTT 222
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 60 GCTCTTCCCTTTCATGGCTCATGGCCACATGATACCAACTCTGGACATGGCCAAGCTCTT 119
Query 223 TGCCACCAAAGGAGCTAAATCCACTATCCTCACTACACCTCTCAATGCCAAGCTCTTCTT 282
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 CGCCACCAAAGGAGCTAAATCCACTATCCTCACTACACCTCTAAATGCCAAGCTCTTCTT 179
Query 283 CGAGAAACCCATCAAATCATTCAACCAAGACAACCCGGGACTCGAAGACATCACCATCCA 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGAGAAACCCATCAAATCATTCAACCAAGACAACCCGGGACTCGAAGACATCACCATCCA 239
Query 343 GATCCTTAATTTCCCTTGCACAGAGCTTGGTTTGCCTGATGGCTGTGAGAATACTGATTT 402
||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 240 GATCCTTCATTTCCCTTGCACTGAGCTTGGTTTGCCTGATGGATGTGAGAATACTGATTT 299
Query 403 CATCTTCTCCACACCTGACCTAAACGTAGGTGACTTGAGTCAAAAGTTTTTACTCGCAAT 462
||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 300 CATCTTCTCGACGCCTGACCTAAACATAGGTGACTTGAATCAAAAGTTTTTACTCGCAAT 359
Query 463 GAAATATTTCGAAGAGCCACTAGAGGAGCTCCTCGTGACAATGAGACCAGACTGTCTTGT 522
|||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||||||
Sbjct 360 GAAATATTTCAAAGAGCCACTAGAGAAGCTCCTTGAGACAATGAGACCAGACTGTCTTGT 419
Query 523 CGGTAACATGTTCTTCCCTTGGTCCACTAAAGTTGCTGAGAAGTTCGGAGTACCGAGACT 582
||| |||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 420 CGGCAACATGTTCTTCCCTTGGGCCACTAAAGTCGCTGAGAAGTTTGGAGTACCGAGACT 479
Query 583 TGTGTTCCACGGCACAGGCTACTTCTCTTTATGTGCTTCTCATTGCATAAGGCTCCCTAA 642
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 480 TGTGTTCCACGGCACAGGCTTCTTTTCTTTATGTGCTTCTCATTGCATAAGGCTCCCTAA 539
Query 643 GAATGTGGCAACAAGTTCTGAGCCCTTTGTGATTCCTGATCTCCCGGGAGACATTTTGAT 702
|||||| || |||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 540 GAATGTAGCTTCAAGTTCTGAGCCCTTTGTGATACCTGATCTCCCGGGAGACATTGTGAT 599
Query 703 TACAGAGGAACAGGTCATGGAGACAGAAGAAGAGTCTGTAATGGGGAGGTTTATGAAGGC 762
||||| ||| |||||||| |||| |||||||||||||||| ||||||||||||||||||
Sbjct 600 TACAGGGGAGCAGGTCATAGAGAAAGAAGAAGAGTCTGTAGTGGGGAGGTTTATGAAGGA 659
Query 763 AATAAGAGACTCAGAGAGAGATAGCTTTGGCGTGTTGGTGAACAGCTTCTACGAGCTTGA 822
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 AATAAGAGACTCAGAGAGAGATAGCTTTGGTGTGTTGGTGAACAGCTTCTACGAGCTTGA 719
Query 823 ACAGGCTTACTCAGATTATTTCAAGAGCTTTGTGGCGAAAAGAGCGTGGCATATCGGTCC 882
|| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 720 ACCGGCTTACTCAGATTATTTCAAGAGTTTTGTGGCGAAAAGGGCGTGGCATATCGGTCC 779
Query 883 GCTTTCCTTAGGAAATAGAAAGTTCGAGGAGAAAGCAGAAAGAGGCAAAAAGGCAAGCAT 942
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 GCTTTCTTTAGGAAATAGAAAGTTCGAGGAGAAAGCAGAAAGAGGCAAAAAAGCAAGCAT 839
Query 943 TGATGAGCATGAATGTTTGAAATGGCTCGACTCCAAGAAATGTGATTCAGTGATTTACAT 1002
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TGATGAGCATGAATGTTTGAAATGGCTCGATTCCAAGAAATGTGATTCAGTGATTTACAT 899
Query 1003 GGCCTTTGGAACCATGTCTAGCTTTAAAAACGAGCAGCTGATAGAGATTGCAGCTGGTTT 1062
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 900 GGCCTTCGGAACCATGTCTAGCTTTAATAACGAGCAGCTGATAGAGATTGCAGCTGGGTT 959
Query 1063 AGATATGTCAGGACATGATTTTGTCTGGGTGGTTAACAGAAAAGGCAGCCAAGTTGAGAA 1122
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 960 GGATATGTCAGGTCATGATTTTGTCTGGGTGGTTAACAAAAAAGGCAGCCAAGTTGAGAA 1019
Query 1123 GGAAGATTGGTTACCAGAGGGGTTTGAAGAGAAGACCAAGGGAAAAGGATTGATAATCCG 1182
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 GGAAGATTGGTTACCAGAGGGGTTTGAAGAGAAGACGAAGGGAAAAGGATTGATAATCCG 1079
Query 1183 AGGGTGGGCGCCACAAGTGCTGATACTTGAGCA-CAAAGCAATTGGCGGATTTTTGACGC 1241
|||||||||||||| ||||||||||| || || ||| |||||||| |||||||||||||
Sbjct 1080 TGGGTGGGCGCCACAGGTGCTGATACTAGACCATCAA-GCAATTGGTGGATTTTTGACGC 1138
Query 1242 ATTGTGGATGGAACTCG-TTATTAGAAGGGGTGGCAGCGGGCCTGCCAATGGTGACATGG 1300
|||| |||||||||||| || | |||||| ||||| ||||||||||||||||||| |||
Sbjct 1139 ATTGCGGATGGAACTCGCTTCT-AGAAGGCGTGGCTTCGGGCCTGCCAATGGTGACGTGG 1197
Query 1301 CCCGTGGGAGCCGAGCAGTTCTACAACGAGAAATTGGTGACACAAGTGTTGAAAACAGGA 1360
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1198 CCAGTGGGAGCCGAGCAGTTCTACAATGAGAAATTGGTGACACAAGTGTTGAAAACAGGA 1257
Query 1361 GTGAGTGTGGGAGTGAAGAAGATGATGCAAGTAGTTGGAGACTTCATTAGCAGAGAGAAA 1420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 GTGAGTGTGGGAGTGAAGAAGATGATGCAAGTCGTTGGAGACTTCATTAGCAGAGAGAAA 1317
Query 1421 GTGGAGGGAGCGGTGAGGGAAGTGATGGTTGGAGAAGAGAGGAGGAAACGGGCCAAGGAG 1480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GTGGAGAGAGCGGTGAGGGAAGTGATGGTTGGAGAAGAGAGGAGGAAACGGGCCAAGGAG 1377
Query 1481 TTAGCAGAAATGGCGAAAAATGCGGTGAAAGAAGGAGGATCTTCAGATCTAGAGGTAGAT 1540
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1378 TTAGCGGAAATGGCGAAAAATGCGGTGAAAGAAGGAGGATCTTCAGATCTAGAGTTAGAT 1437
Query 1541 AGGTTGATGGAAGAGCTTACGTTAGTTAAACTGCAAAAAGAGAAGGTATAAAGAAGTTGA 1600
||||||||||||||||||| ||| |||||| ||||||||||||| |||||||||| ||||
Sbjct 1438 AGGTTGATGGAAGAGCTTATGTTGGTTAAATTGCAAAAAGAGAAAGTATAAAGAAATTGA 1497
Query 1601 ATGTATTGCAAGT 1613
|||||||||||||
Sbjct 1498 ATGTATTGCAAGT 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65743762870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5