BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34140.1
Length=1977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491257 jgi|Araly1|491257|fgenesh2_kg.7__690__AT4G34140.1 830 0.0
> Ahg491257 jgi|Araly1|491257|fgenesh2_kg.7__690__AT4G34140.1
Length=1497
Score = 830 bits (449), Expect = 0.0
Identities = 533/574 (93%), Gaps = 3/574 (1%)
Strand=Plus/Plus
Query 656 GGAGATGATGATGCTGAGGAACTTGAAGAGGGAGAATGGATTCCTGAAGAAGATTTTGAT 715
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 427 GGAGACGATGATGCTGAGGAACTTGAAGAGGGAGAATGGATTCCTGAAGACGATTTTGAT 486
Query 716 CCACAAGAAGAGAACTTTGGTGAAGCTGCTCCTTCAAGCGAGGAAGAAAGATGGCTAGCA 775
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CCACAGGAAGAGAACTTTGATGAAGCTGCTCCTTCAAGCGAGGAAGAAAGATGGCTAGCA 546
Query 776 CAATATGGTCAAGTCATCGAATCCCCTGGGAAGACCCTGCCTGAGATCCCGTCTGTTGAT 835
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 547 CAATATGGTCAAGTCGTCGAATCCCCTGGGAAGACCCTGCCTGAGATCTCGTCTGTTGAT 606
Query 836 TTGTGGGATTGGAAACTTGTATGTGAAACCAGAGAAGCTGACAATGAACAGGTGGCTAGG 895
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 607 TTGTGGGATTGGAAACTTGTATGTGAATCCAGAGAAGCTGACAATGCACAGGTGGCTAGG 666
Query 896 TTAGTAGGGAGGCTGGTCAGACAGTCGGCGAACCTTCATCCATCTGTGGTTTCTGGTGGC 955
|||||||||||||| ||||||| ||| || || |||||||||||||||| ||||||||||
Sbjct 667 TTAGTAGGGAGGCTAGTCAGACGGTCTGCCAATCTTCATCCATCTGTGGCTTCTGGTGGC 726
Query 956 ACACTTTTAAAAACTGCCCCAATTTGTGAAGCTCGGCTTCACCTAGTGCGAGTTAGGACA 1015
|||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 727 ACACTTCTCAAAACTGCTCCAATTTGTGAAGCACGGCTTCACCTAGTGCGAGTTAGGACA 786
Query 1016 GGTCAGGTCTATAAACTTCGAAATCCTAGTGCCAAATACCTTGCATCCTTGTCAGTATAT 1075
||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 787 GGTCAGGTCTACAAACTTCAAAATCCTAGTGCCAAATACATTGCATCCTTGTCGGTATAT 846
Query 1076 GACGCCTCCAACCCAACAAAAGATTGGGAATTCCCTGATATTTCAACTGAATGGCAAAAT 1135
||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 847 GACTCCTCCAACCCAACAAAAGATTGGGGATTCCCTGATATTTCAACTGCATGGCAAAAT 906
Query 1136 CCTGATACAAAACGCAAAGCCAAGAAGGGGAAACCAAAAAGGGCCAGCAAACTTACAGTG 1195
|||||||| |||| |||| | ||||||| ||||||||||| | ||||||||||||||
Sbjct 907 CCTGATACGAAACACAAATCTAAGAAGGTGAAACCAAAAACTAACTGCAAACTTACAGTG 966
Query 1196 AAGCCTAGTGAAGTAGACATGATTGAAGAGAAGA 1229
|||||| ||||||| ||||| | |||||| |||
Sbjct 967 AAGCCTCGTGAAGTCGACAT--T-GAAGAGCAGA 997
Score = 669 bits (362), Expect = 0.0
Identities = 405/425 (95%), Gaps = 6/425 (1%)
Strand=Plus/Plus
Query 1322 AAACGCGAAGCTAAGAAGGTGAAACCAAAAACTGACTGCAAACTCACAGTGAAGCCACGA 1381
|||| | || ||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 916 AAACACAAATCTAAGAAGGTGAAACCAAAAACTAACTGCAAACTTACAGTGAAGCCTC-- 973
Query 1382 GATGAAGTCAACATGATTGAAGAGCAGAGAAGCTGTTCATACAGAGATAGAGCCGCTGAG 1441
| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 G-TGAAGTCGAC---ATTGAAGAGCAGAGAAGCTGTTCATACAGAGATAGAGCCGCTGAG 1029
Query 1442 AGAAGAAATTTGCATGGTGGATATGGTGTTGGACCAGGTCAAAAAGGAACAACAGTGGAC 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1030 AGAAGAAATTTGCATGGTGGATATGGTGTTGGACCAGGTCAAAAAGGAACAACGGTGGGC 1089
Query 1502 CATAACACGGACGAGCATTCAGTTCCCGACACTGGTTCTGAAGAGGATACTGTAGCAGAA 1561
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1090 CATAACACGGACGAGCATTCAGTTCCCGACACTGCTTCTGAAGAGGACACTGTAGCAGAA 1149
Query 1562 GCATTGGAGCTATCATTTGGATCTGGAAGTTATGCAAGGAGGATAATGGGAAACATGGGT 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 GCATTGGAGCTATCATTTGGATCTGGAAGTTATGCAAGGAGGATAATGGGAAACATGGGT 1209
Query 1622 TGGAAGGAGGGTGAGACGCTAGGGAAGAATACAAAAGGTTTGGTTGAACCGATACAAGCA 1681
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1210 TGGAAGGAGGGTGAGACGCTCGGGAAGAATACAAAAGGTTTGGTTGAACCGATACAAGCA 1269
Query 1682 GTGGGCAACACTGGGAATGTAGGGCTAGGATTTCCTCAAAGGAGAAGGAAATAATATGAG 1741
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1270 GTGGGCAACACTGGGAATGTAGGGCTAGGTTTTCCTCAAAGGAGAAGGAAATAATCTGAG 1329
Query 1742 GTACA 1746
|||||
Sbjct 1330 GTACA 1334
Score = 318 bits (172), Expect = 8e-86
Identities = 232/258 (90%), Gaps = 16/258 (6%)
Strand=Plus/Plus
Query 225 ATCACAGTAGTGGGTTTTACCATGACCCAAATGCTGGTTGGTATTATTGTAGCAAGGATG 284
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 183 ATCGCA-TAGTGGGTTTTACCATGACCCAAATGCTGGTTGGTATTATTGTATCAAGGATG 241
Query 285 GTCGTTACTACAAGCATGAAAATGGCGAATATGTTCCCTTGGAATACGACGAGTCTTCGG 344
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 242 GTCGTTACTACAAGCATGAAAATGGCGAATATGTTCCCTTGGAATACGACGAGTCTGCCG 301
Query 345 TGAACCCTCCTGGAGATATTGTCACCTATGAGCCATCTGAAGATGA---CTTAGGCAGAA 401
||||||||||| ||||||||||||| |||||||||||| ||||||| || ||||||||
Sbjct 302 TGAACCCTCCTCGAGATATTGTCACTTATGAGCCATCTCAAGATGATGACTCAGGCAGAA 361
Query 402 AATGTGCATTTTCTCAGGCTGAGAATGTTGAAAATGGATGTGAAGTTTCTCTGAGTAATC 461
||| || | |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 362 AAT----AT-------G-CTGAGAATGTAGAAAATGGATGTGAAGTTTCACTGAGTAATC 409
Query 462 CTGGAGAAACTCCTTCAG 479
||||||||||||||||||
Sbjct 410 CTGGAGAAACTCCTTCAG 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74314067995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5