BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34150.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944499 jgi|Araly1|944499|scaffold_700728.1 1170 0.0
> Ahg944499 jgi|Araly1|944499|scaffold_700728.1
Length=788
Score = 1170 bits (633), Expect = 0.0
Identities = 735/784 (94%), Gaps = 7/784 (1%)
Strand=Plus/Plus
Query 77 TTCTTCCA--AATTCATGTCGATGATGGCGGGTATACAAGGCCAGATTCTCGAGGTCACT 134
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 TTCTTCCATCAATTCATGTCGATGATGGCGGGTATACAAGGCCAGATTCTCGAGGTCACT 65
Query 135 GTTGTTGGGTGCCAGAAATTGAAAGACACGGAATGGTTTTCAAGACAAGATCCATACGTC 194
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 66 GTTGTTGGGTGCCAGAAATTGAAAGACACGGAATGGTTTTCAAGGCAAGATCCATACGTC 125
Query 195 GTCCTTGAGTATGGTGGCAGAAGTCACCGTACCAGAACCTGCACAGATGGTGGAAAGAAC 254
||| |||||||| | ||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 126 GTCATTGAGTATAGCAGCACAAGGCATCGTACCAGAACCTGCACAGATGGTGGAAAGAAC 185
Query 255 GCTGTTTTCCAAGAGAAGTTTATCTTCACTTTGATTGAAGGGCTTAGGGATCTTAAGGTT 314
||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 186 GCTGTTTTCCAAGAGAAGTTTATGTTCACTTTGCTTGAAGGGCTTAGGGATATTAAGGTT 245
Query 315 GCTGTCTGGAATAGCAACACTCTCTCCACTGATGACTTCATTGGCAATGCAACGATTCAA 374
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 246 GCTGTCTGGAATAGCAACACTCTCTCCACTGATGACTTCATTGGGAATGCAACGATTCAA 305
Query 375 TTGCAGAAAGTTCTTTCTCAGGAATACGACGACTGTACCTGGACTTTGCAGAGTAAAACT 434
|||||||||||||||||||||| ||| |||||||||||||||||| |||||| |||||||
Sbjct 306 TTGCAGAAAGTTCTTTCTCAGGGATATGACGACTGTACCTGGACTCTGCAGACTAAAACT 365
Query 435 GGGAGATTCGCTGGAGAAGTACA-ACTCCTACTGCATTATGCGGGAGCAAAGAAACATAA 493
||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||| ||
Sbjct 366 GGGAGATTCGCTGGAGAAGTA-AGACTCATACTGCATTATGCAGGAGCAAAGAAACAAAA 424
Query 494 TTACGGGTCTGCGCCATCAGCACCGTATGCACCTCACGTACCTCAATACTCAGCACCGCC 553
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 425 TTACGGGTCTGCGCCATCAGCACCGTATGCGCCTCAAGTACCTCAATACTCAGCACCGAC 484
Query 554 TTCTGCATCTCCGTATTCAACAGCACCACCATACTCTGGACCATCTCTATACCCACAAGT 613
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 485 TTCTGCATCTCCATATTCACCAGCAGCACCATACTCTGGACCATCTCTATACCCACAAGT 544
Query 614 ACAACAATACCCTCAGCCATCAGGATACCCTCCAGCTTCAGG-G-T-ATCCTCCTCAGCC 670
|||||||||||||||||||||||||||||| ||||||||| | | |||||||||||||
Sbjct 545 ACAACAATACCCTCAGCCATCAGGATACCCACCAGCTTCATCAGCTTATCCTCCTCAGCC 604
Query 671 ATCTGCCTATCCACCTCCCTCAACCTCGGGCTACCCTCCGATCCCTTCAGCTTACCCACC 730
|||||||||||| |||||||||||||||| |||||||||| | |||||||||||||| ||
Sbjct 605 ATCTGCCTATCCTCCTCCCTCAACCTCGGCCTACCCTCCGGTTCCTTCAGCTTACCCTCC 664
Query 731 TCCTCCGCCATCCTCAGCTTACCCTCCTCAACCATACCCTCCGCAACCATCATATTACCC 790
|||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 665 TCCTCCGCCATCGTCAGCTTACCCTCCTCCTCCATACCCTCCTCAACCATCATATTACCC 724
Query 791 ACAAGGTCCATATCCAGGACAATACCCACCTCCTCCATACTAGAGCGTTTGGCGTTTAGA 850
|||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 725 ACAAGGTCCATACCCAGGACAATACCCACCTCCTCCGTACTAGAGCCTCAGGCGTTTAGA 784
Query 851 ATTT 854
||||
Sbjct 785 ATTT 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5