BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34160.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944498 jgi|Araly1|944498|scaffold_700727.1 1784 0.0
> Ahg944498 jgi|Araly1|944498|scaffold_700727.1
Length=1165
Score = 1784 bits (966), Expect = 0.0
Identities = 1121/1189 (94%), Gaps = 37/1189 (3%)
Strand=Plus/Plus
Query 243 TTCTTGAGTTTAGTCCCCCACAATGGCGATTCGGAAGGAGGAAGAAAGTAGAGAAGAACA 302
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTGAGTTTAGT--CCCACAATGGCGATTCGGAAGGAGGAAGAAAGTAGAGAAGAACA 58
Query 303 GAGCAATTCGTTTCTTCTTGATGCTCTCTACTGCGAAGAAGAGAAATGGGACGATGAA-G 361
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
Sbjct 59 GAGCAATTCGTTTCTTCTTGATGCTCTCTACTGTGAAGAAGAGAAATGGGAAGATGAAGG 118
Query 362 -G-AGAAGAAGTTGAAGAAAACTCTTCCTTG---TCTTCTTC-T-T-CTTCTCCATTCGT 413
| |||||||||||||||||||||||||||| |||||||| | | |||||||||||||
Sbjct 119 AGAAGAAGAAGTTGAAGAAAACTCTTCCTTGTCTTCTTCTTCTTCTACTTCTCCATTCGT 178
Query 414 TGTTTTGCAACAAGATTTGTTCTGGGAAGATGAAGATCTGGTTACACTCTTCTCCAAAGA 473
| |||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 179 TCTTTTGCCACAAGATTTGTTCTGGGAAGATGAAGATCTGGTCACTCTCTTCTCCAAAGA 238
Query 474 AGAAGAACAAGGACTCAGCTGTCTCGATGATGTTTATCTTTCCACGGATCGAAAAGAAGC 533
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 AGAAGAACAAGGACTCAGCTGTCTCGATGATGTTTATCTCTCCACGGATCGAAAAGAAGC 298
Query 534 TGTTGGTTGGATTCTGAGAGTCAACGCTCATTATGGCTTCTCTACTTTAGCAGCTGTTTT 593
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 299 TGTTGGTTGGATTCTGAGAGTCAACGCTCATTATGGCTTCTCTACTTTGGCAGCTGTTTT 358
Query 594 AGCCATAACTTATCTCGATAAGTTCATCTGTAGCTACAGCTTACAGAGAGACAAACCATG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 AGCCATAACTTATCTCGATAAGTTCATCTGTAGCTACAGCTTACAGAGAGACAAACCTTG 418
Query 654 GATGCTTCAGCTCGTTTCTGTCGCGTGTCTCTCATTAGCTGCTAAAGTCGAAGAAACCCA 713
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 419 GATGCTTCAGCTCGTTTCTGTCGCTTGTCTCTCACTAGCTGCTAAAGTCGAAGAAACCCA 478
Query 714 AGTCCCTCTTCTTCTAGACTTTCAAGTGGAGGAGACAAAGTATGTGTTTGAAGCAAAAAC 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 479 AGTCCCTCTTCTTCTAGACTTTCAAGTGGAGGAGACAAAGTATGTGTTTGAAGCTAAAAC 538
Query 774 CATACAGAGAATGGAGCTACTGATTCTGTCTACTCTCGAGTGGAAGATGCATCTCATTAC 833
|||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 539 CATACAAAGAATGGAGCTACTGATTCTGTCTACTCTCCAATGGAAGATGCATCTCATTAC 598
Query 834 TCCAATTTCG-TTCGTAGACCACATTATCAGGAGATTGGGACTTAAGAACAATGCTCACT 892
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCCAATTTCGTTTC-TAGACCACATTATCAGGAGATTGGGACTTAAGAACAATGCTCACT 657
Query 893 GGGATTTCCTCAACAAATGCCACCGTCTCCTCCTCTCTGTAATCTCCGATTCAAGATTTG 952
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGGATTTTCTCAACAAATGCCACCGTCTCCTCCTCTCTGTAATCTCCGATTCAAGATTTG 717
Query 953 TCGGGTACCTCCCATCAGTAGTTGCCGCAGCTACCATGATGCGAATTATAGAGCAAGTTG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCGGGTACCTCCCATCAGTAGTTGCCGCAGCTACCATGATGCGAATTATAGAGCAAGTTG 777
Query 1013 ATCCCTTTGACCCTCTTTCATACCAAACTAATCTCCTCGGTGTCCTTAACTTAACCAAGG 1072
| ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 778 AGCCCTTTGACCCTCCTTCATACCAAACTAATCTCCTAGGTGCCCTTAACTTAACCAAGG 837
Query 1073 AAAAGGTGAAAACTTGCTACGATCTAATCCTCCAACTACCAGTGGACCGCATCGGTTTAC 1132
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 838 AAAAGGTGAAAACTTGCTACGATTTAATCCTCCAACTACCAGTGGACCGCATCGGTTTAC 897
Query 1133 AGATCCAAATCCAATCTTCCAAGAAACGCAAGAGTCACGATTCATC---ATCATCGTTGA 1189
||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 898 AGATCCAAAACCAATCTTCCAAGAAACGCAAGAGTCACGAATCATCCTCATCATCGTTGA 957
Query 1190 ACAGTCCAAGCTGCGTGATTGATGCAAACCCTTTCAATAGCGACGAAAGCTCAAACGATT 1249
|||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 958 ACAGCCCAAGCTGCGTGATTGATTCAAACCCTTTCAATAGTGACGAAAGCTCAAACGATT 1017
Query 1250 CGTGGTCAGCGAGTTCGTGCAACCCACCAACGTCGTCGTCGTCCCCGCAGCAACAACCTC 1309
||||||||||| | ||| | ||| || | || ||||||||||||||
Sbjct 1018 CGTGGTCAGCG--T-CGT-C-----------GTCCTC--C-TC---GCAGCAACAACCTC 1056
Query 1310 CATtgaagaagatgagaggagctgaagagaatgagaagaagaagCCGATTTTGCATCTGC 1369
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1057 CATTGAAGAAGATGAGAGGAGGTCAAGAGAATGAGAAGAAGAAGCCGATTTTGCATCTGC 1116
Query 1370 CATGGGCAATCGTAGCCACTCCATAATCGAAAGCTCGATTTCGTTTATA 1418
| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1117 CGTGGGCAATCGAAGCCACTCCATAATCGAAAGCTCGATTTCGTTTATA 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5