BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34180.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952033 jgi|Araly1|952033|scaffold_31000001.1 1273 0.0
Ahg328326 jgi|Araly1|328326|fgenesh1_pm.C_scaffold_7000553 1120 0.0
Ahg314132 jgi|Araly1|314132|fgenesh1_pm.C_scaffold_1002912 730 0.0
Ahg944496 jgi|Araly1|944496|scaffold_700725.1 130 3e-29
> Ahg952033 jgi|Araly1|952033|scaffold_31000001.1
Length=821
Score = 1273 bits (689), Expect = 0.0
Identities = 777/818 (95%), Gaps = 12/818 (1%)
Strand=Plus/Plus
Query 28 TTAACCGGCGACCCGAAACAATGACCCGGTCCGTCAGTttccctctcttcctcttcgccg 87
|||||| ||||||||||||||||||||||||||| | ||||||||||||| || ||||||
Sbjct 1 TTAACCCGCGACCCGAAACAATGACCCGGTCCGTGAATTTCCCTCTCTTCATCCTCGCCG 60
Query 88 ttgtactctccctctcttcttctctcctcGCCG------A---C---GATCCCAAACCAA 135
||| ||||||||| ||||||||||||||||||| | | |||||||||||||
Sbjct 61 TTGCACTCTCCCTTTCTTCTTCTCTCCTCGCCGTCAAACACTCCGATGATCCCAAACCAA 120
Query 136 TCCGCCGTGAGGTCTACGAAGGAGGTAAGATATACGACATCAGCCATCGTTACACGCCGG 195
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TCCGCCGTGAGGTTTATGAAGGAGGTAAGATATACGACATCAGCCACCGTTACACGCCGG 180
Query 196 AGATTCCAGCTTGGGAATCTTCGGAAGGATTGGGAAAGACGTTCCTGCGATTAGCCGCGA 255
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 181 AGATTCCAGCTTGGGAATCTTCGGAGGGATTGGGAAAGACGTTCTTGCGATTAGCCGCGA 240
Query 256 GTATGAAGAATGGATCATTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAA 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTATGAAGAATGGATCATTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAA 300
Query 316 CTCACGTGGATGCTCCAGGTCACTTTTGGGATAATTATTACGATGCTGGTTTTGATACTG 375
||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 301 CTCACGTCGATGCTCCAGGTCACTTCTGGGACAATTATTACGACGCTGGTTTTGATACTG 360
Query 376 ATTCGCTTGATCTCCAAGTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCGAGAGATA 435
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 ATTCGCTTGATCTTCAAGTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCAAGAGATA 420
Query 436 AGAACATTACTGCTGAGGTAATGGAATCACTTCATATACAAAGAGGAGTTCGTCGTGTGC 495
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 421 AGAACATTACTGCTGAGGTAATGGAATCGCTTCATATTCAAAGAGGAGTTCGTCGTGTGC 480
Query 496 TCTTTAGAACATCCAACACCGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCT 555
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTTTAGAACATCCAACACTGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCT 540
Query 556 TTGCTGGGTTCATGACCGATGGGGCTAAATGGTTGGTTGAGAATACAGACATCAAACTTA 615
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 541 TTGCTGGGTTCATGACCGATGGGGCGAAATGGTTGGTTGAGAACACAGACATCAAACTTA 600
Query 616 TTGGGCTTGATTATCTTTCATTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTTA 675
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGGGCTTGATTATCTTTCCTTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTTA 660
Query 676 TACTTAAAGGACGGGATATAATCCCAGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTAG 735
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 TACTTAAAGGACGGGATATAATCCCTGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTAG 720
Query 736 GAACATACTCGCTTCATTGCTTACCGCTGAGATTAGTTGGAGCGGAAGGAGCACCGACAA 795
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 721 GAACATACTCGCTTCATTGCTTACCGTTGAGATTGGTTGGAGCGGAAGGAGCACCGACAA 780
Query 796 GATGCATTCTCATCAAGTGATTCAGttcttcttcttct 833
|||||||||||||||||||||||||||| |||| ||||
Sbjct 781 GATGCATTCTCATCAAGTGATTCAGTTCATCTTTTTCT 818
> Ahg328326 jgi|Araly1|328326|fgenesh1_pm.C_scaffold_7000553
Length=741
Score = 1120 bits (606), Expect = 0.0
Identities = 644/663 (97%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 153 GAAGGAGGTAAGATATACGACATCAGCCATCGTTACACGCCGGAGATTCCAGCTTGGGAA 212
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 79 GAAGGAGGTAAGATATACGATATCAGCCACCGTTACACGCCGGAGATTCCAGCTTGGGAA 138
Query 213 TCTTCGGAAGGATTGGGAAAGACGTTCCTGCGATTAGCCGCGAGTATGAAGAATGGATCA 272
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 139 TCTTCGGAGGGATTGGGAAAGACGTTCTTGCGATTAGCCGCGAGTATGAAGAATGGATCA 198
Query 273 TTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAACTCACGTGGATGCTCCA 332
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 199 TTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAACTCACGTCGATGCTCCA 258
Query 333 GGTCACTTTTGGGATAATTATTACGATGCTGGTTTTGATACTGATTCGCTTGATCTCCAA 392
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 259 GGTCACTTCTGGGACAATTATTACGACGCTGGTTTTGATACTGATTCGCTTGATCTTCAA 318
Query 393 GTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCGAGAGATAAGAACATTACTGCTGAG 452
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 319 GTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCAAGAGATAAGAACATTACTGCTGAG 378
Query 453 GTAATGGAATCACTTCATATACAAAGAGGAGTTCGTCGTGTGCTCTTTAGAACATCCAAC 512
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 379 GTAATGGAATCGCTTCATATTCAAAGAGGAGTTCGTCGTGTGCTCTTTAGAACATCCAAC 438
Query 513 ACCGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCTTTGCTGGGTTCATGACC 572
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ACTGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCTTTGCTGGGTTCATGACC 498
Query 573 GATGGGGCTAAATGGTTGGTTGAGAATACAGACATCAAACTTATTGGGCTTGATTATCTT 632
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 499 GATGGGGCGAAATGGTTGGTTGAGAACACAGACATCAAACTTATTGGGCTTGATTATCTT 558
Query 633 TCATTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTTATACTTAAAGGACGGGAT 692
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TCCTTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTTATACTTAAAGGACGGGAT 618
Query 693 ATAATCCCAGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTAGGAACATACTCGCTTCAT 752
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 ATAATCCCTGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTAGGAACATACTCGCTTCAT 678
Query 753 TGCTTACCGCTGAGATTAGTTGGAGCGGAAGGAGCACCGACAAGATGCATTCTCATCAAG 812
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TGCTTACCGTTGAGATTGGTTGGAGCGGAAGGAGCACCGACAAGATGCATTCTCATCAAG 738
Query 813 TGA 815
|||
Sbjct 739 TGA 741
> Ahg314132 jgi|Araly1|314132|fgenesh1_pm.C_scaffold_1002912
Length=816
Score = 730 bits (395), Expect = 0.0
Identities = 607/708 (86%), Gaps = 20/708 (3%)
Strand=Plus/Plus
Query 118 CCGACGATCCCAAA-CCAATCCGCCGTGAGGTCTA---CGAAG-GAGGTAAGATATACGA 172
|||||||| | ||| ||||||||||| || || || || || ||| ||||||| |||
Sbjct 119 CCGACGAT-CAAAAGCCAATCCGCCGAGAAGTTTATGGCGGAGAAAGG-AAGATATTCGA 176
Query 173 CATCAGCCATC-GTTACACGCCGGAGATTCCAGCTTGGGAATCTTCGGAAGGATTGGGAA 231
||||||||| | | ||||| || ||| | |||| |||||| ||||| |||||||| || |
Sbjct 177 CATCAGCCACCAG-TACACACCAGAGCTGCCAGTTTGGGAGTCTTCAGAAGGATTAGG-A 234
Query 232 AGACGTTCCTGCGA-TTAGCCGCGAGTATGAAGAATGGATCATTCGCTAACGTATCGGAG 290
|| ||| || || || |||| ||| |||||||||||||| ||||||| | ||| ||
Sbjct 235 AG--GTTTATGAGACTT-GCCGTGAGCATGAAGAATGGATCCGTCGCTAATATCTCGAAG 291
Query 291 ATGAAACTATCTGTTCACTCTGGAACTCACGTGGATGCTCCAGGTCACTTT-TGGGATA- 348
||||||||||||||||||||||||||||| || ||||||||||| || ||| || |
Sbjct 292 ATGAAACTATCTGTTCACTCTGGAACTCATGTTGATGCTCCAGGCCA-TTTCCATGA-AC 349
Query 349 ATTATTACGATGCTGGTTTTGATACTGATTCGCTTGATCTCCAAGTCCTAAATGGTCCTG 408
||||||| ||| ||||||||||| ||||||| |||||||| ||| |||| || |||||||
Sbjct 350 ATTATTATGATTCTGGTTTTGATTCTGATTCACTTGATCTTCAAATCCTTAACGGTCCTG 409
Query 409 CTTTGTTGGTTGATGTTCCGAGAGATAAGAACATTACTGCTGAGGTAATGGAATCACTTC 468
|||| |||||||||||||| ||||||||||||||| | |||||||| ||| |||||||||
Sbjct 410 CTTTATTGGTTGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTTC 469
Query 469 ATA-TACAAAGAGGAGTTCGTCGTGTGCTCTTTAGAACATCCAACACCGACAAGCGGCTT 527
||| | ||||| ||| | |||||||||||||||| ||| | ||||| || | |||||||
Sbjct 470 ATATTCCAAAG-GGAATCCGTCGTGTGCTCTTTAAAACTTTGAACACGGATAGGCGGCTT 528
Query 528 ATGTTTAAGAAAGAGTTTGATTCAAGCTTTGCTGGGTTCATGACCGATGGGGCTAAATGG 587
|||||||||||||| |||||||||||||||| ||||||| ||| ||||||||| ||||||
Sbjct 529 ATGTTTAAGAAAGAATTTGATTCAAGCTTTGTTGGGTTCTTGATCGATGGGGCGAAATGG 588
Query 588 TTGGTTGAGAATACAGACATCAAACTTATTGGGCTTGATTATCTTTCATTTGCTGCTTTT 647
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 589 TTGGTTGAGAATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTAT 648
Query 648 GAGGAATCACCTGCAACACACAGGGTTATACTTAAAGGACGGGATATAATCCCAGTGGAA 707
|| ||| ||||||| || || ||| |||||||| || |||||||||||||||| || |||
Sbjct 649 GATGAAGCACCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAA 708
Query 708 GCGCTGAAGCTGGATGGTGTGGAGGTAGGAACATACTCGCTTCATTGCTTACCGCTGAGA 767
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 709 GCGCTGAAGCTGGATGATGTGGAGGTAGGAATGTACTCGCTTCATTGCTTACCGTTGAGA 768
Query 768 TTAGTTGGAGCGGAAGGAGCACCGACAAGATGCATTCTCATCAAGTGA 815
|| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 769 TTGGTTGGAGCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGA 816
> Ahg944496 jgi|Araly1|944496|scaffold_700725.1
Length=1300
Score = 130 bits (70), Expect = 3e-29
Identities = 82/88 (93%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 1322 AAAGAGACATGCAAGTCCCATCTAGCTTGCAAAAAGCTAGCGTACTTAGCACCAAGGAGA 1381
||||| |||||||||||||||| ||||||||| |||||||||||||| || || ||||||
Sbjct 1300 AAAGAAACATGCAAGTCCCATCAAGCTTGCAAGAAGCTAGCGTACTTGGCTCCCAGGAGA 1241
Query 1382 AGCCTCTGAATGCACAAGAGAGCGTTCT 1409
||||||||||||||||||||||||||||
Sbjct 1240 AGCCTCTGAATGCACAAGAGAGCGTTCT 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5