BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G34190.1

Length=774
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328325 jgi|Araly1|328325|fgenesh1_pm.C_scaffold_7000552           634    0.0  


> Ahg328325 jgi|Araly1|328325|fgenesh1_pm.C_scaffold_7000552
Length=426

 Score =  634 bits (343),  Expect = 0.0
 Identities = 414/444 (93%), Gaps = 21/444 (5%)
 Strand=Plus/Plus

Query  116  ATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAATTCTGGTGCCCTA  175
            ||||||||||||||||| |||||||||| |||||||||||||||||||||   ||     
Sbjct  1    ATGGCCTTATCTCAAGTCTCTGCGTCTCGCGCCTTTTCTCTTCCCAATTC---TG-----  52

Query  176  AAGCTAGCCACAATCACAAACCCAACTTCTACATGTCGGGTTCATGTTCCGCAACTTGCT  235
              | |       ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  53   --G-T-------ATCACAAACCCAAGTTCTACTTGTCGGGTTCATGTTCCGCAACTTGCT  102

Query  236  GGAATCCGATCCACCTTCGCTTCTGGTTCTCCTCTCTTGCCATTGAAGTTGAGTATGACC  295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  103  GGAATCCGATCCACCTTCGCTTCTGGTTCTCCTCTCTTGCCATTGAAGTTGAGTATGACT  162

Query  296  CGTAGAGGA-G--GAAACAGAGCAGCATCAGTTTCCATAAGAAGTGAGCAAAGTACAGAA  352
            ||||||||| |  |||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  163  CGTAGAGGAGGAAGAAACAGAGCAGCATCAGTTTCAATTAGAAGTGAGCAAAGTACAGAA  222

Query  353  GGAAGCAGTGGTTTGGATATATGGCTTGGTCGTGGCGCCATGGTTGGTTTTGCAGTTGCC  412
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGAAGCAGTGGTTTGGACATATGGCTTGGTCGTGGCGCCATGGTTGGTTTTGCAGTTGCC  282

Query  413  ATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGAATTTTGGAGTAGCAAGTCCA  472
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  283  ATTACTGTTGAGATTTCAACTGGAAAAGGACTTCTTGAGAATTTTGGAGTAGCAAGTCCA  342

Query  473  TTGCCTACGGTTGCTTTAGCTGTTACAGCATTGGTTGGTGTTCTAGCTGCGGTTTTCATC  532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  343  TTGCCTACGGTTGCTTTAGCTGTTACAGCATTGGTTGGTGTTCTAGCTGCGGTTTTCATC  402

Query  533  TTCCAATCTTCTTCTAAAAACTGA  556
            ||||||||||||||||||||||||
Sbjct  403  TTCCAATCTTCTTCTAAAAACTGA  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28554064833


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5