BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34200.1
Length=2095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491252 jgi|Araly1|491252|fgenesh2_kg.7__685__AT4G34200.1 3214 0.0
Ahg906268 jgi|Araly1|906268|Al_scaffold_0003_3396 1543 0.0
Ahg479462 jgi|Araly1|479462|fgenesh2_kg.3__2163__AT3G19480.1 826 0.0
> Ahg491252 jgi|Araly1|491252|fgenesh2_kg.7__685__AT4G34200.1
Length=2029
Score = 3214 bits (1740), Expect = 0.0
Identities = 1936/2031 (95%), Gaps = 12/2031 (1%)
Strand=Plus/Plus
Query 2 ACTCCGCCACCAACAATATTTTTCTCTACTCAATTCACTCACAC--TC-C-A----A-AA 52
|||||||||||||||| | |||||||||||| |||||||||||| || | | | ||
Sbjct 1 ACTCCGCCACCAACAACAATTTTCTCTACTC-ATTCACTCACACATTCACTACTCCATAA 59
Query 53 GCGGTAGCAATGTCAGCCACCGCCGCCGCCTCCTCCTCGATCGCCGTTGCCACCAACTCT 112
|||||||||||||||||||||||||||||| | ||||||||| |||| |||||||| |||
Sbjct 60 GCGGTAGCAATGTCAGCCACCGCCGCCGCCGCTTCCTCGATCTCCGTCGCCACCAATTCT 119
Query 113 CTCAGGAACGTGACTCTGTCTTCCAGATCGCCCCTTCCATCAGCCATCTCCGTGGCTTTC 172
|||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 120 CTCAAAAACGTCACTCTCTCTTCCAGATCGCCTCTTCCATCAGCCATCTCCGTCGCTTTC 179
Query 173 CCTTCCCGTGGACGCAATACTCTTCAGCGACGCCTCGTTCTCGTTTCCTGCAGTACTGGA 232
||||| ||||||||||||||||||||| |||| |||||||||||||| |||||| |||||
Sbjct 180 CCTTCTCGTGGACGCAATACTCTTCAGAGACGGCTCGTTCTCGTTTCGTGCAGTGCTGGA 239
Query 233 GACGGATCTAAGCCTACGATTCTCGTGGCGGAGAAGCTCGGTGACGCTGGTATTAAGCTT 292
|| ||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 240 GATGGATCTAAGCCTACGATTCTCGTGGCGGAGAAGCTCGGTGAGGCTGGTGTAAAGCTC 299
Query 293 TTGGAGGATGTCGCGAATGTCGACTGTTCGTATAACATGACTCCTGAGGAGCTCAACATT 352
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 TTGGAGGATTTTGCGAATGTCGACTGTTCGTATAACATGACTCCTGAGGAGCTCAACACT 359
Query 353 AAGATCTCGCTCTGTGACGCCTTGATCGTGAGGAGTGGGACTAAGGTTGGCCGTGAGGTG 412
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGATCTCGCTATGTGATGCGTTGATCGTGAGGAGTGGGACTAAGGTTGGCCGTGAGGTG 419
Query 413 TTCGAATCGTCTCACGGACGGCTCAAGGTTGTTGGTCGCGCTGGTGTTGGGATCGACAAC 472
|| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 420 TTTGAATCGTCTCGCGGACGGCTCAAGGTTGTTGGACGCGCTGGTGTTGGGATCGACAAC 479
Query 473 GTGGATCTGAGTGCAGCGACGGAGTTTGGGTGTTTGGTTGTCAACGCTCCGACGGCGAAC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTGGATCTGAGTGCAGCGACGGAGTTTGGGTGTTTGGTTGTCAACGCTCCGACGGCGAAC 539
Query 533 ACGATCGCTGCCGCTGAGCACGGAATCGCTCTTATGGCCGCCATGGCTAGGAACGTAGCT 592
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 540 ACGATCGCTGCTGCTGAGCACGGAATCGCTCTTATGGCGGCCATGGCTAGGAACGTTGCT 599
Query 593 CAAGCTGATGCGTCTGTTAAGGCTGGAGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCA 652
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 CAAGCTGATGCGTCTGTGAAGGCTGGAGAGTGGAAGAGGAACAAGTATGTGGGTGTTTCA 659
Query 653 CTTGTGGGAAAGACCCTTGCAGTGTTGGGATTCGGGAAAGTTGGGACGGAAGTTGCTCGT 712
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 CTTGTGGGCAAGACCCTTGCAGTGTTGGGATTCGGGAAAGTTGGGACGGAAGTTGCTAGA 719
Query 713 CGTGCTAAGGGTCTTGGTATGCGTGTCATTGCTCATGATCCCTATGCCCCAGCAGACCGT 772
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGTGCCAAGGGTCTTGGTATGCGTGTCATTGCTCATGATCCCTATGCCCCAGCAGACCGT 779
Query 773 GCACACGCCATTGGTGTTGACTTAGTGAGCTTTGATGAAGCCCTTGCCACCGCGGATTTC 832
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 GCACACGCCATTGGTGTTGACTTAGTGAGCTTTGATGAAGCCCTTGCGACCGCGGATTTC 839
Query 833 ATTTCTCTTCATATGCCTCTTACGCCAACAACATCGAAGATACTAAACGACGAAACCTTT 892
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 840 ATTTCTCTGCACATGCCTCTTACGCCAACAACATCGAAGATACTCAACGACGAAACCTTT 899
Query 893 GCCAAAATGAAGAAGGGAGTTCGAATTGTTAATGTTGCTCGTGGAGGTGTCATAGACGAA 952
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 900 GCCAAAATGAAGAAAGGAGTTCGCATTGTCAATGTTGCTCGTGGAGGTGTCATAGACGAA 959
Query 953 GATGCGTTAGTGAGAGCTCTGGATGCTGGTATTGTTGCGCAGGCTGCACTTGATGTTTTC 1012
|||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||
Sbjct 960 GATGCGTTAGTGAGAGCTCTGGATTCTGGCATTGTTGCTCAGGCTGCACTTGATGTCTTC 1019
Query 1013 ACCAAAGAGCCTCCGGCTAAAGATAGCAAGCTCGTGCAGCACGAGAGGGTCACTGTGACA 1072
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACCAAAGAGCCGCCGGCTAAAGATAGCAAGCTCGTGCAGCACGAGAGGGTCACTGTGACT 1079
Query 1073 CCTCATCTTGGAGCTAGTACCATGGAGGCTCAGGAAGGAGTTGCCATCGAAATTGCTGAA 1132
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 CCTCATCTTGGAGCCAGTACCATGGAGGCGCAGGAAGGAGTTGCCATCGAAATTGCTGAA 1139
Query 1133 GCTGTTGTTGGAGCTCTGAATGGAGAGCTTGCTGCTACTGCAGTCAATGCACCTATGGTT 1192
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1140 GCTGTTGTTGGAGCTCTGAATGGAGAGCTTGCTGCTACAGCTGTCAATGCACCTATGGTT 1199
Query 1193 TCTGCTGAGGTTCTGACCGAGCTGAAACCATATGTGGTGCTAGCCGAGAAACTAGGAAGA 1252
|||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1200 TCTGCTGAGGTTCTAACCGAGTTGAAACCATATGTGGTACTAGCCGAGAAACTAGGAAGA 1259
Query 1253 CTGGCAGTGCAACTGGTGGCCGGAGGAAGCGGTGTGAAAAACGCGAAAATCACATACGCC 1312
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1260 CTGGCAGTGCAATTGGTGGCCGGAGGAAGCGGTGTGAAAAACGTGAAAATCACATACGCC 1319
Query 1313 TCAGCAAGAGCCACTGATGATCTTGACACCAGACTTCTCCGAGCCATGATCACCAAGGGA 1372
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1320 TCAGCAAGAGCCACTGATGATCTTGACACCAGACTTCTACGAGCCATGATCACCAAGGGA 1379
Query 1373 ATCATCGAGCCAATCTCTGACGTATATGTCAATTTGGTCAACGCTGATTTCACAGCCAAG 1432
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 ATTATCGAGCCAATCTCTGACGTCTATGTCAATTTGGTCAACGCTGATTTCACAGCCAAG 1439
Query 1433 CAGAGAGGTCTCAGACTCTCAGAGGAACGTGTGCTTTTGGATGGTTCACCAGAGAGCCCA 1492
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1440 CAGAGAGGTCTTAGACTCTCAGAGGAACGTGTGCTCTTGGATGGTTCACCAGAGAGCCCG 1499
Query 1493 TTGGAGACAATAACTGTTCAGCTAAGCAATGTGGAGTCCAAATTCGCCAGTTCCCTGTCT 1552
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1500 TTGGAGACAATAACTGTTCAGCTAAGCAATGTGGAGTCTAAATTCGCCAGTTCGTTGTCT 1559
Query 1553 GAATCAGGAGAGGTTAAAGTGGAAGGAAAGGTTAAAGACGGAGTCCCGCATTTGACAAAG 1612
|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1560 GAATCAGGAGAGGTCAAAGTGGAAGGAAGGGTTAAAGACGGAGTCCCACATTTGACAAAG 1619
Query 1613 GTTGGATCTTTTGAGGTCGATGTAACTCTTGAAGGTAGTATCATACTGTGCAGGCAGGTG 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GTTGGATCTTTTGAGGTCGATGTAACTCTTGAAGGTAGTATCATACTGTGCAGGCAGGTG 1679
Query 1673 GATCAACCTGGTATGATCGGGACTGTCGGAAGCATCCTTGGAGAGTCTAATGTCAATGTT 1732
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1680 GATCAACCTGGTATGATCGGGACAGTCGGAAGCATCCTTGGAGAGTCTAATGTGAATGTT 1739
Query 1733 AACTTCATGAGCGTTGGGAGAATTGCACCGAGGAAGCAAGCGATTATGGCGATTGGAGTA 1792
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1740 AACTTCATGAGCGTTGGGAGGATTGCACCGAGGAAGCAAGCGATTATGGCTATCGGAGTA 1799
Query 1793 GATGACATACCAAGCAAAGAGACACTGAAGAAGATTGGGGAAATTCCAGCGGTTGAGGAG 1852
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1800 GATGACATACCAAGCAAAGATACACTGAAGAAGATTGGGGAAATTCCAGCGATTGAGGAG 1859
Query 1853 TTCGTTTTCCTCAAGCTCTAGTTTGGTGTGTTGTTGATTCTTGAATCTTAAATCTCACCG 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 TTCGTTTTCCTCAAGCTCTAGTTTGGTGTGTTGTTGATTCTTGAATCTTAAATCTCACCG 1919
Query 1913 GTGAAGATTTGATGTTGTTTGTTGGTTTAGGCAATAATGTTATTTTGGCTTTCATACAGT 1972
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1920 GTGAAGATTTGATGTTGTTTGTTGGTTTAGGCAATAATGTTATGTTGGCTTTC-TACAGT 1978
Query 1973 TTTGGTAACGTTGAGAGTAGTG-TCTCTTTGATGTTTCAACTTTATGGTTT 2022
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1979 TTTGGTAACGTTGAGAGTAGTGGTCTCTTTGATGTTTCAACTTTATGGTTT 2029
> Ahg906268 jgi|Araly1|906268|Al_scaffold_0003_3396
Length=1809
Score = 1543 bits (835), Expect = 0.0
Identities = 1393/1664 (84%), Gaps = 32/1664 (2%)
Strand=Plus/Plus
Query 226 TACTGGAGACGGATCTAAGCCTA-CGATTCTCGTGGCGGAGAAGCTCGGTGACGCTGGTA 284
||| ||||||||| |||| || | || ||||||| |||||||||||||| || ||||| |
Sbjct 162 TACCGGAGACGGAGCTAAACCAACCG-TTCTCGTAGCGGAGAAGCTCGGAGAAGCTGG-A 219
Query 285 -TTAAGCT-TTTGGAG-GATGTCGCGAATGTCGACTGTTCGTATAACATGACTCCTGAGG 341
|| |||| || ||| || |||| || ||||| ||||| |||||| ||||||| ||||
Sbjct 220 GTTCAGCTACTT-GAGAAAT-TCGCAAACGTCGATTGTTCTTATAACTTGACTCCAGAGG 277
Query 342 AGCTCAACATTAAGATCTCGCTCTGTGACGCCTTGATCGTGAGGAGTGGGACTAAGGTTG 401
|||| |||| |||||||| || ||||| || ||||| ||||| |||| ||| ||||| |
Sbjct 278 AGCTAAACACGAAGATCTCACTATGTGATGCGTTGATTGTGAGAAGTGCGACGAAGGTAG 337
Query 402 GCCGTGAGGTGTTCGAATCGTCTCACGGACGGCTCAAGGTTGTTGGTCGCGCTGGTGTTG 461
| ||||| ||||| |||||||||| |||||||| ||||||||||| | ||||||||||
Sbjct 338 GTCGTGATGTGTTTGAATCGTCTCGTGGACGGCTTAAGGTTGTTGGAAGAGCTGGTGTTG 397
Query 462 GGATCGACAACGTGGATCTGAGTGCAGCGACGGAGTTTGGGTGTTTGGTTGTCAACGCTC 521
|||| || ||||| ||||| ||||| |||||||||||||| ||||||||||| || ||||
Sbjct 398 GGATTGATAACGTAGATCTAAGTGCTGCGACGGAGTTTGGTTGTTTGGTTGTTAATGCTC 457
Query 522 CGACGGCGAACACGATCGCTGCCGCTGAGCACGGAATCGCTCTTATGGCCGCCATGGCTA 581
|||| ||||| || ||||| |||||||| || || || || |||||||| || |||||||
Sbjct 458 CGACTGCGAATACTATCGCCGCCGCTGAACATGGGATTGCACTTATGGCTGCTATGGCTA 517
Query 582 GGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTGGAGAGTGGAAGAGGAACAAGTATG 641
| || || ||||||||||||| |||||||| |||||||| ||||| ||||| |||||||
Sbjct 518 GAAATGTTTCTCAAGCTGATGCTTCTGTTAAAGCTGGAGAATGGAAAAGGAATAAGTATG 577
Query 642 TAGGTGTTTCACTTGTGGGAAAGACCCTT-GCAGTGTTGGGATTCGGGAAAGTTGGGA-C 699
| ||||| ||||| ||||| |||| | || || ||| ||||||| ||||||||| ||| |
Sbjct 578 TTGGTGTATCACTAGTGGGGAAGA-CATTAGCTGTGATGGGATTTGGGAAAGTT-GGATC 635
Query 700 GGAAGTTGCTCGTCGTGCTAAGGGTCTTGGTATGCGTGTCATTGCTCATGATCCCTATGC 759
||||||||||| || ||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 636 TGAAGTTGCTCGACGAGCTAAAGGACTTGGTATGCGTGTTATTGCTCATGATCCTTATGC 695
Query 760 CCCAGCAGACCGTGCACACGCCATTGGTGTTGACTTAGTGAGCTTTGATGAAGCCCTTGC 819
|| || || ||||| || || |||||||| || |||||||||||||||||||| ||| |
Sbjct 696 GCCTGCGGATCGTGCTCATGCTATTGGTGTGGATTTAGTGAGCTTTGATGAAGCGCTTTC 755
Query 820 CACCGCGGATTTCATTTCTCTT-CATATGCCTCTTACGCCAACAACATCGAAGATACTAA 878
|| || |||||||||||| || |||||||||||||| || | || |||||||| || |
Sbjct 756 GACTGCTGATTTCATTTCT-TTACATATGCCTCTTACACCTGCTACTTCGAAGATGCTTA 814
Query 879 ACGACGAAACCTTTGCCAAAATGAAG-AAGGGAGTTCGAATTGTTAATGTTGCTCGTGGA 937
|||| ||||| ||||| || |||||| ||||| || | |||||||||||||||||||||
Sbjct 815 ACGATGAAACGTTTGCGAAGATGAAGAAAGGG-GTGAGGATTGTTAATGTTGCTCGTGGA 873
Query 938 GGTGTCATAGACGAAGATGCGTTAGTGAGAGCTCTGGATGCTGGTATTGTTGCGCAGGCT 997
||||| || || ||||||||||| || |||||| | |||| |||||||||||| ||||||
Sbjct 874 GGTGTTATTGATGAAGATGCGTTGGTTAGAGCTTTAGATGGTGGTATTGTTGCTCAGGCT 933
Query 998 GCACTTGATGTTTTCACCAAAGAGCCTCCGGCTAAAGATAGCAAGCTCGTGCAGCACGAG 1057
|| ||||||||||| || |||||||| |||||||| ||||| ||| | |||||||| |||
Sbjct 934 GCTCTTGATGTTTTTACTAAAGAGCCGCCGGCTAAGGATAGTAAGTTGGTGCAGCATGAG 993
Query 1058 AGGGTCACTGTGACACCTCATCTTGGAGCTAGTACCATGGAGGCTCAGGAAGGAGTTGCC 1117
||||| || || ||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 994 AGGGTTACAGTTACACCTCATCTTGGAGCAAGTACTATGGAGGCTCAGGAAGGAGTAGCT 1053
Query 1118 ATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGAGAGCTTGCTGCTACTGCAGTC 1177
|| || ||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 1054 ATTGAGATTGCAGAAGCTGTTGTTGGAGCTCTTAATGGAGAGCTTGCTTCTACTGCTGTA 1113
Query 1178 AATGCACCTATGGTTTCTGCTGAGGTTCT-GACCGAGCTGAAACCATATGTGGTGCTAGC 1236
||||||||||||||||||||||||||||| | | ||||||||||||||||||||| | ||
Sbjct 1114 AATGCACCTATGGTTTCTGCTGAGGTTCTCG-CGGAGCTGAAACCATATGTGGTGTTGGC 1172
Query 1237 CGAGAAACTAGGAAGACTGGCAGTGCAACTGGTGGCCGGAGGAAGCGGTGTGAAAAACGC 1296
||| || | || |||||||| || ||| ||||||| ||||||||||||||||| ||||
Sbjct 1173 GGAGCAATTGGGGAGACTGGCTGTCCAATTGGTGGCTGGAGGAAGCGGTGTGAAGAACGT 1232
Query 1297 GAAAATCACATACGCCTCAGCAAGAGCCACTGATGATCTTGACACCAGACTTCTCCGAGC 1356
|||| | || ||||| || || |||||||||| ||||||||||| ||||||||| ||||
Sbjct 1233 GAAAGTGACCTACGCTTCGGCTCGAGCCACTGACGATCTTGACACTAGACTTCTCAGAGC 1292
Query 1357 CATGATCACCAAGGGAATCATCGAGCCAATCTCTGACGTATATGTCAAT-TTGGTCAACG 1415
|||||| || ||||| ||||| ||||||||||| ||||| ||||| || ||| ||||||
Sbjct 1293 CATGATTACGAAGGGTATCATTGAGCCAATCTCCGACGTGTATGTAAACCTTG-TCAACG 1351
Query 1416 CTGATTTCACAGCCAAGCAGAGAGGTCTCAGACTCTCAGAGGAACGTG-TG-CTTTTGGA 1473
| |||| |||||| || ||||||||| | ||| ||||||||||||| | || | || | |
Sbjct 1352 CGGATTACACAGCAAAACAGAGAGGTATGAGAATCTCAGAGGAACGGGGTGTCCTT-G-A 1409
Query 1474 TGGTTCACCAGAGAGCCCATTGGAGACAATAACTGTTCAGCTAAGCAATGTGGAGTCCAA 1533
|||||||||||||||||| | ||||| || || ||||||||| |||| || ||||||||
Sbjct 1410 CGGTTCACCAGAGAGCCCACTCGAGACCATCACGGTTCAGCTAGGCAACGTAGAGTCCAA 1469
Query 1534 ATTCGCCAGTTCCCTGTCTGAATCAGGAGAGGTTAAAGTGGAAGGAA-AGGTTAAAGACG 1592
||||||||| || | |||||||| ||||| || ||||| ||||||| || ||||||| |
Sbjct 1470 ATTCGCCAGCGCCTTATCTGAATCTGGAGAAGTCAAAGTTGAAGGAAGAG-TTAAAGATG 1528
Query 1593 GAGT-CCCGCATTTGACAAAGGTTGGATCTTTTGAGGTCGATGTAACTCTTGAAGGTAGT 1651
| || ||| |||||||||||||| || |||||||| || ||||| | ||||||||| |||
Sbjct 1529 GGGTTCCC-CATTTGACAAAGGTGGGTTCTTTTGAAGTAGATGTGAGTCTTGAAGGAAGT 1587
Query 1652 ATCATACTGTGCAGGCAGGTGGATCAACCTGGTATGATCGGGACTGTCGGAAGCATCCTT 1711
|| |||||||| ||||| || |||||||| || |||||||||||||||||||| ||| ||
Sbjct 1588 ATAATACTGTGTAGGCAAGTAGATCAACCGGGCATGATCGGGACTGTCGGAAGAATC-TT 1646
Query 1712 GG-AGAGTCTAATGTCAATGTTAACTTCATGAGCGTTGGGAGAATTGCACCGAGGAAGCA 1770
|| |||||| ||||| ||||| | |||||||| ||||| ||||| || |||||||||||
Sbjct 1647 GGGAGAGTCAAATGTTAATGTCAGTTTCATGAGTGTTGGAAGAATCGCGCCGAGGAAGCA 1706
Query 1771 AGC-GATTATGGCGATTGGAGTAGATGACATACCAAGCAAAGAGACACTGAAGAAGATTG 1829
||| | ||||||| ||||| || |||||||| || |||||||| || |||||||| || |
Sbjct 1707 AGCAG-TTATGGCAATTGGTGTTGATGACATGCCGAGCAAAGACACTCTGAAGAAAATCG 1765
Query 1830 GGGAAATTCCAGCGGTTGAGGAGTTCGTTTTCCTCAAGCTCTAG 1873
| |||||||| || || |||||||| || ||||||||||| |||
Sbjct 1766 GTGAAATTCCGGCCGTGGAGGAGTTTGTGTTCCTCAAGCTATAG 1809
> Ahg479462 jgi|Araly1|479462|fgenesh2_kg.3__2163__AT3G19480.1
Length=1942
Score = 826 bits (447), Expect = 0.0
Identities = 1269/1661 (76%), Gaps = 76/1661 (5%)
Strand=Plus/Plus
Query 251 ATTCTCGTGGCGGAGAAGCTCGGTGACGCTGGTATTAAGCT-TTTGGAGGATGT-CGCGA 308
||||||||| |||||||||| || | || || ||| | || || | || || ||| |
Sbjct 195 ATTCTCGTGACGGAGAAGCTAGGCCAAGCGGGGATTGATCTGCTT--AAGAAGTACGCTA 252
Query 309 ATGTCGACTGTTCGTAT-AACATGACTCCT-GAGGAGCTCAACATTAAGATCTCGCTCTG 366
|||| || || || ||| | | ||| | || |||||||| || |||||||| || ||
Sbjct 253 ATGTGGATTGCTCTTATGATC-TGAGT-CTCGAGGAGCTTTGCACGAAGATCTCTCTTTG 310
Query 367 TGACGC-CTTGATCGTGAGGAGTGGGACTAAGGTTGGCCGTGAGGTGTTCGAATCGTCTC 425
||| || | | ||||| |||||||| || |||||||| | || ||||| ||||| || |
Sbjct 311 TGATGCGC-TCATCGTCAGGAGTGGTACGAAGGTTGGGAGAGATGTGTTTGAATCATCGC 369
Query 426 -ACGGACGGCTCAAGGTTGTTGGTCGCGCTGGTGTTGGGATCGACAACGTGGATCT-GAG 483
||| |||| |||||||| || ||||||||||||||||| || || || ||| | | |
Sbjct 370 GTGGGA-GGCTTAAGGTTGTGGGACGCGCTGGTGTTGGGATTGATAATGTTGATTTGGCG 428
Query 484 TGCAGCGACGGAGTTTGGGTGTTTGGTTGTCAACGCTCCGACGGCGAACACGATCGCTGC 543
|| || ||||||| ||| |||||||||||||| |||||||| || |||||| | |||||
Sbjct 429 -GCTGCCACGGAGTATGGTTGTTTGGTTGTCAATGCTCCGACTGCTAACACGGTGGCTGC 487
Query 544 CGCTGAGCACGGAATCGCTCTTATGGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGC 603
||||||||||| || || ||| || ||||||||||||| || | ||||||||||||||
Sbjct 488 TGCTGAGCACGGGATTGCGCTTTTGACCGCCATGGCTAGAAATATCGCTCAAGCTGATGC 547
Query 604 GTCTGTTAAGGCTGG-AGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAA 662
||| | || ||||| | | |||| ||| ||||| ||||||||||||||||||||||| |
Sbjct 548 TTCTATCAAAGCTGGCA-AATGGACGAGAAACAAATATGTAGGTGTTTCACTTGTGGGGA 606
Query 663 AGACCCTTGCAG-TGTTGGGATTCGGGAAAGTTGGGA-CGGAAGTTGCTCGTCGTGCTAA 720
|||| ||||| | | || || || || |||||| ||| | || |||||| | || || |
Sbjct 607 AGACTCTTGCTGTTCTT-GGTTTTGGTAAAGTT-GGATCAGAGGTTGCTAGACGAGCCAG 664
Query 721 GGGTCTTGGTATGCGTGTCATTGCTCATGATCCCTATGCCCCAGCAGACCGTGCAC-ACG 779
||| || || |||| ||||||| | |||||||| ||||| ||||| || ||||||| | |
Sbjct 665 GGGACTAGGGATGCATGTCATTACACATGATCCTTATGCACCAGCGGATCGTGCACGA-G 723
Query 780 CCATTGGTGTTGA-CTTAGTGAGCTTTGATGAAGCCCTTGCCACCGCGGATTTCATTTCT 838
|||||||||| || ||| || || ||||| | ||| || | || || || ||||| |||
Sbjct 724 CCATTGGTGTGGAGCTT-GTTAGTTTTGAAGTAGCTATTTCAACTGCAGACTTCATCTCT 782
Query 839 CTT-CATATGCCTCTTAC-GCCAACAACATCGAAGAT-ACTAAACGACGAAACCTTTGCC 895
|| ||| |||||||||| | | | || |||||||| | | || || | |||||| |
Sbjct 783 -TTGCATTTGCCTCTTACTG-CTGCTACTTCGAAGATGA-TGAATGATGTGACCTTTTCG 839
Query 896 AAAATGAAGAAGGGAGTTCGAATTGTTAATGTTGCTCGTGGAGGTGTCATAGACGAAGAT 955
| |||||||| ||||| || ||||| |||||||||||||| || || || || || ||
Sbjct 840 ATGATGAAGAAAGGAGTGCGTATTGTCAATGTTGCTCGTGGTGGAGTTATTGATGAGGAA 899
Query 956 GCGT-TAGTGAGAGCTCTGGATGCT-GGTATTGTTGCGCAGGCTGCACTTGATGTTTTCA 1013
|| | | ||||||| || ||| | ||||||||||| ||||| || |||||||||||||
Sbjct 900 GC-TCTTTTGAGAGCGCTTGAT-TTGGGTATTGTTGCTCAGGCAGCTCTTGATGTTTTCA 957
Query 1014 CCA-AAGAGCCTCCGGCTAAAGATAGCAAGCTCGTGC-AGCACGAGAGGGTCACTGTGAC 1071
|| ||||| || | |||||| | ||| | |||| | || ||||| || |||| ||
Sbjct 958 -CAGTGGAGCCACCTGTTAAAGACAATAAGTTGGTGCTA-CATGAGAGTGTTACTGCCAC 1015
Query 1072 ACCTCATCTTGGAGCTAGTACCATGGAGGCTCAGGAAGGAGTTGCCATCGAAATTGCTGA 1131
||||||||||| ||||||||||||||||||||||||||||| || |||||| | || ||
Sbjct 1016 GCCTCATCTTGGTGCTAGTACCATGGAGGCTCAGGAAGGAGTGGCTATCGAAGTCGCAGA 1075
Query 1132 AGCTGTTGTTGGAGCTCTGA-ATGGAGAGCTTGCTGCTACTGCAGTCAATGCACCTATGG 1190
||||||| |||| ||| ||| | ||||| ||||||||||| || ||||||||||| ||||
Sbjct 1076 AGCTGTTATTGGTGCTTTGAGA-GGAGAACTTGCTGCTACGGCTGTCAATGCACCGATGG 1134
Query 1191 TTTCTGCT-GAGGT-TCTGACCGAGCTGAAACCATATGTGGTGCTAGCCGAGAAACTAGG 1248
|| | || ||||| | ||| ||||||||||| ||||| ||||| || ||||| || ||
Sbjct 1135 TTCCA-CTAGAGGTAT-TGAGGGAGCTGAAACCGTATGTTGTGCTTGCTGAGAAGCTTGG 1192
Query 1249 AAGACTGGCAGTGCAACTGGTGGCCGGAGGAAGCGGTGTGAAAAAC-GCGAAAATCACAT 1307
|| ||||| || ||| |||| |||| |||||||||||||| | | |||| | || |
Sbjct 1193 TAGGCTGGCTGTACAATTGGTTACCGGTGGAAGCGGTGTGAATG-CTGTGAAAGTGACTT 1251
Query 1308 ACGCCTCAGCAAGAGC-CACTGATGATCTTGACACCAGACTTCTCCGAGCCATGATCACC 1366
| || || | ||||| | |||||||||| ||||| ||||||||||| |||||| |||
Sbjct 1252 ATGCTTCTTCCAGAGCTC-CTGATGATCTCGACACTAGACTTCTCCGTGCCATGGTCATA 1310
Query 1367 AAGGGAATCATCGAGCCAATCTCT-GACGTATATG-TCAATTTGGTCAACGCTGATTTCA 1424
|| ||| ||||||| || || || | ||||| | | ||| |||| ||| |||||| ||
Sbjct 1311 AAAGGACTCATCGAACCCATTTCCAG-CGTAT-TCATAAATCTGGTTAACTCTGATTACA 1368
Query 1425 CAGCCAAGCAGA-GAGGTCTCAGACTCTCAGAGGAACGTGTGCTTTTGGATGGTTCACCA 1483
||||| || | | || ||| | ||||||| |||||| || || | ||||| |||||
Sbjct 1369 TTGCCAAACA-ACGTGGAGTCAAAATCTCAGAAGAACGTATGGTTCTAGATGGCTCACCC 1427
Query 1484 GAGAGCCCA-TTGGAGACAATAACTGTTCAGCTAAGCAAT-GTGGAGTCCAA-ATTCGCC 1540
|||| ||| ||| | ||| ||||||||| | || |||| ||||| || || |||||||
Sbjct 1428 GAGAATCCAATTGAATACA-TAACTGTTCGGATA-GCAAACGTGGAATC-AAGATTCGCC 1484
Query 1541 AGTTCCCTGTCTGAATCAGGAGAGGTTAAAGTGGAAGGAAAGGTTAAAGACGGAGTCCCG 1600
|| | | || || || || ||| | ||||| ||||||| ||| ||| | || || ||
Sbjct 1485 AGCGCGTTATCAGAGTCCGGTGAGATCAAAGTAGAAGGAAGGGTGAAACAAGGGGTTCCA 1544
Query 1601 CATT-TGAC-AAAGGTTGGATCT-TTTG-AGGTCGATGTAACTCTTGAAGGTAGTATCAT 1656
| | | || |||| | || | | |||| || | ||||| | ||| ||||| ||| | ||
Sbjct 1545 -AGTCTAACCAAAG-TGGGCT-TATTTGGAG-TGGATGTGAGTCTAGAAGGGAGTGTGAT 1600
Query 1657 ACTGTGCAGGCAGGTGGATCAACCTGGTATGATCGGGACTGTCGGAAGCATCCTT-GGAG 1715
||||||||||| || ||||| ||||| |||||||| | || | |||||| || ||||
Sbjct 1601 TCTGTGCAGGCAAGTAGATCAGCCTGGGATGATCGGTAAAGTTGCTAGCATC-TTAGGAG 1659
Query 1716 AGTCTAAT-GTCAATGTTAACTTCATGAGCGTTGGGAGAATTGCACCGAGG-AAGCAAGC 1773
| | || || || || | |||||||||||| || |||| || || ||| ||||||||
Sbjct 1660 A-TGAAAACGTGAACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCC-AGGCAAGCAAGC 1717
Query 1774 GATTATGGCGATTGGAGTAGATGA-CATACCAAGCAAAGAGACACTGAAGAAGATTGGGG 1832
| | ||||| |||||||||||||| || |||||||||||| || | ||||| || || |
Sbjct 1718 GGTAATGGCAATTGGAGTAGATGAACA-ACCAAGCAAAGAAACTTTAAAGAAAATCGGAG 1776
Query 1833 AAATTCCAGCGGTTGAGGAGTTCGTTTTCCTCAAGCTCTAG 1873
| ||||| || |||| ||||| ||||||||||| || |||
Sbjct 1777 ACATTCCTGCCATTGAAGAGTTTGTTTTCCTCAAACTATAG 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78808716905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5