BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34210.1
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944456 jgi|Araly1|944456|scaffold_700685.1 610 3e-174
Ahg930151 jgi|Araly1|930151|scaffold_302608.1 329 9e-90
Ahg930150 jgi|Araly1|930150|scaffold_302607.1 311 3e-84
Ahg930149 jgi|Araly1|930149|scaffold_302606.1 176 1e-43
> Ahg944456 jgi|Araly1|944456|scaffold_700685.1
Length=501
Score = 610 bits (330), Expect = 3e-174
Identities = 420/463 (91%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 ATGTCGTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 82
Query 61 GCGGTAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGAT 120
||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 83 GCGGTAGCAATCCAATCTCAGACCATAGCACATATGGTTGAAGACGATTGCGCCGCTAAT 142
Query 121 GGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGTGAAAGTGATCGAGTACTGCAA 179
||||||||||||||||||||| | |||||||| ||||| ||||||||| |||||||||||
Sbjct 143 GGAATCCCTCTTGCAAACGTG-ACAAGCAAGACTCTTGCGAAAGTGATTGAGTACTGCAA 201
Query 180 GAAACACCACGTCGACGAGGCTAATCCTATCTCTGAAGAGGATCTCAACAACTGGGACGA 239
||| ||||||||||| |||||||| |||||||||||||| || ||||| || |||||| |
Sbjct 202 GAAGCACCACGTCGATGAGGCTAACCCTATCTCTGAAGATGAACTCAAGAAGTGGGAC-A 260
Query 240 -GAAGTTCATGGAT-CTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTAC 297
| |||||||||| | ||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct 261 CGGAGTTCATGGAAAC-CGATCAATCCACGATATTTGATCTCATTCTTGCTGCGAATTAC 319
Query 298 CTCAACATAAAAAGCTTGCTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAGGC 357
|| ||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 320 CTAAACATCAAAAGCTTGCTTGATCTCACATGTCAAACTATTGCGGATATGATCAAAGGC 379
Query 358 AAGACTCCAGAGGAGATTCGTTCAACTTT-CAACATTGAGAATGATTTTACACCTGAGGA 416
|||| |||||||||||||||| || |||| ||||||| ||||||||||||||||||||||
Sbjct 380 AAGAATCCAGAGGAGATTCGTACA-CTTTTCAACATTAAGAATGATTTTACACCTGAGGA 438
Query 417 AGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA 459
||||||| ||||||| |||||||||||||||||||||||||
Sbjct 439 GGAAGAAGAGGTTCGTAGGGAGAATCAATGGGCTTTTGAATGA 481
> Ahg930151 jgi|Araly1|930151|scaffold_302608.1
Length=499
Score = 329 bits (178), Expect = 9e-90
Identities = 371/464 (80%), Gaps = 14/464 (3%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 60
||||| ||||||| ||| ||||| ||||||||||||| | ||||||||| | |||||
Sbjct 21 ATGTCGGCGAAGATAATCAAGTTGAAGAGCTCCGATGGTGAATCGTTTGAGATCAAAGAA 80
Query 61 GCGG-TAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGA 119
| || | ||| |||||| ||||||||| ||| || |||| ||||||||| | | |
Sbjct 81 GAGGCT-GCACGCCAATCCCAGACCATATTTCATCTGATTGACGACGATTGCACCGATAA 139
Query 120 TGGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGT-GAAAGTGATCGAGTACTGC 177
| |||||| || ||||||| || ||||||||||||| | || ||| |||||||||
Sbjct 140 AGAAATCCCGGTTCCAAACGT-GACAAGCAAGATTCTT-TCGATGGTGGTCGAGTACTTA 197
Query 178 AAGAAACACCACGTCGACGAGGCTAATCCTAT-CTCTGAAGAGGATCTCAACAACTGGGA 236
||||| |||||||||| || ||||| ||| | | | || ||||||||||| || |||||
Sbjct 198 AAGAAGCACCACGTCGGTGATGCTAACCCT-TCCACCGACGAGGATCTCAAGAAGTGGGA 256
Query 237 CGAGAAGTTCATGGATCTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTA 296
|| | |||||||| | |||| |||||||| |||||||| ||||| | ||||||||| |
Sbjct 257 CGCGGAGTTCATGCAAATCGATCAATCCACGATCTTTGATCTCATTATGGCTGCGAATCA 316
Query 297 CCTCAACATAAAAAG-CTTGCTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAG 355
||| ||||| ||||| ||| | ||| || |||||||||||||| ||||| ||||||||||
Sbjct 317 CCTAAACATCAAAAGCCTTAC-TGACCTAACATGCCAAACTGTCGCGGATATGATCAAAG 375
Query 356 -GCAAGACTCCAGAGGAGATTCGTTCAAC-TTTCAACATTGAGAATGATTTTACACCTGA 413
| || |||||| | |||| || |||| |||||||||||||||||||||||||||||
Sbjct 376 AGGAA-ACTCCAAAACAGATCCG-CCAACGCTTCAACATTGAGAATGATTTTACACCTGA 433
Query 414 GGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAAT 457
||||||| ||||||||| |||| | ||||| |||||||||||
Sbjct 434 GGAAGAAAAAGCTGTTCTTAAGAACTATCAAAAGGCTTTTGAAT 477
> Ahg930150 jgi|Araly1|930150|scaffold_302607.1
Length=507
Score = 311 bits (168), Expect = 3e-84
Identities = 374/471 (79%), Gaps = 24/471 (5%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAAGATGATCGT-GTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGA 59
||||| ||||||||||| | ||||| |||||| |||||||| |||||||| | ||||
Sbjct 28 ATGTCGACGAAGATGATC-TCGTTGACGAGCTCTGATGGTCAAACGTTTGAGATCAAAGA 86
Query 60 AGCGGTAGCAATCCAATCG-CAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCT- 117
|| | ||| ||||| | |||| |||| |||||| |||| |||||||||| | |
Sbjct 87 AGATGCCGCACGCCAAT-GCCAGATCATAAATCATATGATTGAGGACGATTGCGCCGATA 145
Query 118 GATGGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGTGAAAGTGATCGAGTACTG 176
|| | |||||| ||| ||||||| || | |||||||||||| || ||| ||||||||||
Sbjct 146 GA-GAAATCCCGCTTCCAAACGT-GACAGGCAAGATTCTTGCGATGGTGCTCGAGTACTG 203
Query 177 CAAGAAACACCACGTCGACGAGGCTAATCCTAT-CTCTGAAGAGGATCTCAACAACTGGG 235
|||||| ||||||||||| || ||||| ||| | | | || ||||||||||| || ||||
Sbjct 204 CAAGAAGCACCACGTCGATGATGCTAACCCT-TCCACCGACGAGGATCTCAAGAAATGGG 262
Query 236 ACGAGAAGTTCATGGATCTCGAACAATCCAC-CATCTTTGAACTCATCCTTGCTGCGAAT 294
|||| ||||||||||| || |||| || | ||||||| ||||| |||||| | |
Sbjct 263 ACGAAAAGTTCATGGAAAAAGATCAATTAACGC-TCTTTGATCTCATTAATGCTGCTAGT 321
Query 295 TACCTCA-ACATAAAAAG-CTTGCTTGATCTCA-CATGCCAAACTG-TTGCGGACATGAT 350
||||| | ||||| |||| ||| |||||||| | |||||||||||| | |||| ||||
Sbjct 322 TACCT-AGACATACAAAGCCTT-CTTGATCT-AGCATGCCAAACTGCCT-CGGATATGAG 377
Query 351 CAAAGGCAAGACTCCAGAGGAGATTCGTTC-AACT-TTCAACATTGAGAATGATTTTACA 408
||||| ||| |||| || ||| ||| | || | ||||||||||||||||||||||||
Sbjct 378 CAAAGCCAAAACTCTGGACCAGACTCG--CGAATTCTTCAACATTGAGAATGATTTTACA 435
Query 409 CCTGAGGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA 459
|||||||||||| ||||||||| |||||| ||||| |||||||||||||
Sbjct 436 CCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGCTTTTGAATGA 486
> Ahg930149 jgi|Araly1|930149|scaffold_302606.1
Length=269
Score = 176 bits (95), Expect = 1e-43
Identities = 201/250 (80%), Gaps = 15/250 (6%)
Strand=Plus/Plus
Query 217 GAGGATCTCAACAACTGGGACGAGAAGTTCATGGATCTCGAACAATCCAC-CATCTTTGA 275
||||||||||| || |||||||| ||| ||||||| || |||| || | |||||||
Sbjct 7 GAGGATCTCAAGAAATGGGACGAAAAG-TCATGGAAAAAGATCAATTAACGC-TCTTTGA 64
Query 276 ACTCATCCTTGCTGCGAATTACCTCA-ACATAAAAAG-CTTGCTTGATCTCA-CATGCCA 332
||||| |||||| | |||||| | ||||| |||| ||| |||||||| | |||||||
Sbjct 65 TCTCATTAATGCTGCTAGTTACCT-AGACATACAAAGCCTT-CTTGATCT-AGCATGCCA 121
Query 333 AACTG-TTGCGGACATGATCAAAGGCAAGACTCCAGAGGAGATTCGTTC-AACT-TTCAA 389
||||| | |||| |||| ||||| ||| |||| || ||| ||| | || | |||||
Sbjct 122 AACTGCCT-CGGATATGAGCAAAGCCAAAACTCTGGACCAGACTCG--CGAATTCTTCAA 178
Query 390 CATTGAGAATGATTTTACACCTGAGGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGC 449
||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |||
Sbjct 179 CATTGAGAATGATTTTACACCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGC 238
Query 450 TTTTGAATGA 459
||||||||||
Sbjct 239 TTTTGAATGA 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16597681215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5