BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34210.1 Length=459 Score E Sequences producing significant alignments: (Bits) Value Ahg944456 jgi|Araly1|944456|scaffold_700685.1 610 3e-174 Ahg930151 jgi|Araly1|930151|scaffold_302608.1 329 9e-90 Ahg930150 jgi|Araly1|930150|scaffold_302607.1 311 3e-84 Ahg930149 jgi|Araly1|930149|scaffold_302606.1 176 1e-43 > Ahg944456 jgi|Araly1|944456|scaffold_700685.1 Length=501 Score = 610 bits (330), Expect = 3e-174 Identities = 420/463 (91%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 1 ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23 ATGTCGTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 82 Query 61 GCGGTAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGAT 120 ||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| || Sbjct 83 GCGGTAGCAATCCAATCTCAGACCATAGCACATATGGTTGAAGACGATTGCGCCGCTAAT 142 Query 121 GGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGTGAAAGTGATCGAGTACTGCAA 179 ||||||||||||||||||||| | |||||||| ||||| ||||||||| ||||||||||| Sbjct 143 GGAATCCCTCTTGCAAACGTG-ACAAGCAAGACTCTTGCGAAAGTGATTGAGTACTGCAA 201 Query 180 GAAACACCACGTCGACGAGGCTAATCCTATCTCTGAAGAGGATCTCAACAACTGGGACGA 239 ||| ||||||||||| |||||||| |||||||||||||| || ||||| || |||||| | Sbjct 202 GAAGCACCACGTCGATGAGGCTAACCCTATCTCTGAAGATGAACTCAAGAAGTGGGAC-A 260 Query 240 -GAAGTTCATGGAT-CTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTAC 297 | |||||||||| | ||| |||||||| || ||||| ||||| ||||||||||||||| Sbjct 261 CGGAGTTCATGGAAAC-CGATCAATCCACGATATTTGATCTCATTCTTGCTGCGAATTAC 319 Query 298 CTCAACATAAAAAGCTTGCTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAGGC 357 || ||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||| Sbjct 320 CTAAACATCAAAAGCTTGCTTGATCTCACATGTCAAACTATTGCGGATATGATCAAAGGC 379 Query 358 AAGACTCCAGAGGAGATTCGTTCAACTTT-CAACATTGAGAATGATTTTACACCTGAGGA 416 |||| |||||||||||||||| || |||| ||||||| |||||||||||||||||||||| Sbjct 380 AAGAATCCAGAGGAGATTCGTACA-CTTTTCAACATTAAGAATGATTTTACACCTGAGGA 438 Query 417 AGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA 459 ||||||| ||||||| ||||||||||||||||||||||||| Sbjct 439 GGAAGAAGAGGTTCGTAGGGAGAATCAATGGGCTTTTGAATGA 481 > Ahg930151 jgi|Araly1|930151|scaffold_302608.1 Length=499 Score = 329 bits (178), Expect = 9e-90 Identities = 371/464 (80%), Gaps = 14/464 (3%) Strand=Plus/Plus Query 1 ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 60 ||||| ||||||| ||| ||||| ||||||||||||| | ||||||||| | ||||| Sbjct 21 ATGTCGGCGAAGATAATCAAGTTGAAGAGCTCCGATGGTGAATCGTTTGAGATCAAAGAA 80 Query 61 GCGG-TAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGA 119 | || | ||| |||||| ||||||||| ||| || |||| ||||||||| | | | Sbjct 81 GAGGCT-GCACGCCAATCCCAGACCATATTTCATCTGATTGACGACGATTGCACCGATAA 139 Query 120 TGGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGT-GAAAGTGATCGAGTACTGC 177 | |||||| || ||||||| || ||||||||||||| | || ||| ||||||||| Sbjct 140 AGAAATCCCGGTTCCAAACGT-GACAAGCAAGATTCTT-TCGATGGTGGTCGAGTACTTA 197 Query 178 AAGAAACACCACGTCGACGAGGCTAATCCTAT-CTCTGAAGAGGATCTCAACAACTGGGA 236 ||||| |||||||||| || ||||| ||| | | | || ||||||||||| || ||||| Sbjct 198 AAGAAGCACCACGTCGGTGATGCTAACCCT-TCCACCGACGAGGATCTCAAGAAGTGGGA 256 Query 237 CGAGAAGTTCATGGATCTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTA 296 || | |||||||| | |||| |||||||| |||||||| ||||| | ||||||||| | Sbjct 257 CGCGGAGTTCATGCAAATCGATCAATCCACGATCTTTGATCTCATTATGGCTGCGAATCA 316 Query 297 CCTCAACATAAAAAG-CTTGCTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAG 355 ||| ||||| ||||| ||| | ||| || |||||||||||||| ||||| |||||||||| Sbjct 317 CCTAAACATCAAAAGCCTTAC-TGACCTAACATGCCAAACTGTCGCGGATATGATCAAAG 375 Query 356 -GCAAGACTCCAGAGGAGATTCGTTCAAC-TTTCAACATTGAGAATGATTTTACACCTGA 413 | || |||||| | |||| || |||| ||||||||||||||||||||||||||||| Sbjct 376 AGGAA-ACTCCAAAACAGATCCG-CCAACGCTTCAACATTGAGAATGATTTTACACCTGA 433 Query 414 GGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAAT 457 ||||||| ||||||||| |||| | ||||| ||||||||||| Sbjct 434 GGAAGAAAAAGCTGTTCTTAAGAACTATCAAAAGGCTTTTGAAT 477 > Ahg930150 jgi|Araly1|930150|scaffold_302607.1 Length=507 Score = 311 bits (168), Expect = 3e-84 Identities = 374/471 (79%), Gaps = 24/471 (5%) Strand=Plus/Plus Query 1 ATGTCTTCGAAGATGATCGT-GTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGA 59 ||||| ||||||||||| | ||||| |||||| |||||||| |||||||| | |||| Sbjct 28 ATGTCGACGAAGATGATC-TCGTTGACGAGCTCTGATGGTCAAACGTTTGAGATCAAAGA 86 Query 60 AGCGGTAGCAATCCAATCG-CAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCT- 117 || | ||| ||||| | |||| |||| |||||| |||| |||||||||| | | Sbjct 87 AGATGCCGCACGCCAAT-GCCAGATCATAAATCATATGATTGAGGACGATTGCGCCGATA 145 Query 118 GATGGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGTGAAAGTGATCGAGTACTG 176 || | |||||| ||| ||||||| || | |||||||||||| || ||| |||||||||| Sbjct 146 GA-GAAATCCCGCTTCCAAACGT-GACAGGCAAGATTCTTGCGATGGTGCTCGAGTACTG 203 Query 177 CAAGAAACACCACGTCGACGAGGCTAATCCTAT-CTCTGAAGAGGATCTCAACAACTGGG 235 |||||| ||||||||||| || ||||| ||| | | | || ||||||||||| || |||| Sbjct 204 CAAGAAGCACCACGTCGATGATGCTAACCCT-TCCACCGACGAGGATCTCAAGAAATGGG 262 Query 236 ACGAGAAGTTCATGGATCTCGAACAATCCAC-CATCTTTGAACTCATCCTTGCTGCGAAT 294 |||| ||||||||||| || |||| || | ||||||| ||||| |||||| | | Sbjct 263 ACGAAAAGTTCATGGAAAAAGATCAATTAACGC-TCTTTGATCTCATTAATGCTGCTAGT 321 Query 295 TACCTCA-ACATAAAAAG-CTTGCTTGATCTCA-CATGCCAAACTG-TTGCGGACATGAT 350 ||||| | ||||| |||| ||| |||||||| | |||||||||||| | |||| |||| Sbjct 322 TACCT-AGACATACAAAGCCTT-CTTGATCT-AGCATGCCAAACTGCCT-CGGATATGAG 377 Query 351 CAAAGGCAAGACTCCAGAGGAGATTCGTTC-AACT-TTCAACATTGAGAATGATTTTACA 408 ||||| ||| |||| || ||| ||| | || | |||||||||||||||||||||||| Sbjct 378 CAAAGCCAAAACTCTGGACCAGACTCG--CGAATTCTTCAACATTGAGAATGATTTTACA 435 Query 409 CCTGAGGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA 459 |||||||||||| ||||||||| |||||| ||||| ||||||||||||| Sbjct 436 CCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGCTTTTGAATGA 486 > Ahg930149 jgi|Araly1|930149|scaffold_302606.1 Length=269 Score = 176 bits (95), Expect = 1e-43 Identities = 201/250 (80%), Gaps = 15/250 (6%) Strand=Plus/Plus Query 217 GAGGATCTCAACAACTGGGACGAGAAGTTCATGGATCTCGAACAATCCAC-CATCTTTGA 275 ||||||||||| || |||||||| ||| ||||||| || |||| || | ||||||| Sbjct 7 GAGGATCTCAAGAAATGGGACGAAAAG-TCATGGAAAAAGATCAATTAACGC-TCTTTGA 64 Query 276 ACTCATCCTTGCTGCGAATTACCTCA-ACATAAAAAG-CTTGCTTGATCTCA-CATGCCA 332 ||||| |||||| | |||||| | ||||| |||| ||| |||||||| | ||||||| Sbjct 65 TCTCATTAATGCTGCTAGTTACCT-AGACATACAAAGCCTT-CTTGATCT-AGCATGCCA 121 Query 333 AACTG-TTGCGGACATGATCAAAGGCAAGACTCCAGAGGAGATTCGTTC-AACT-TTCAA 389 ||||| | |||| |||| ||||| ||| |||| || ||| ||| | || | ||||| Sbjct 122 AACTGCCT-CGGATATGAGCAAAGCCAAAACTCTGGACCAGACTCG--CGAATTCTTCAA 178 Query 390 CATTGAGAATGATTTTACACCTGAGGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGC 449 ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| ||| Sbjct 179 CATTGAGAATGATTTTACACCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGC 238 Query 450 TTTTGAATGA 459 |||||||||| Sbjct 239 TTTTGAATGA 248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16597681215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5