BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34215.1
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491251 jgi|Araly1|491251|fgenesh2_kg.7__684__AT4G34215.2 1245 0.0
Ahg895283 jgi|Araly1|895283|Al_scaffold_0006_3279 147 2e-34
> Ahg491251 jgi|Araly1|491251|fgenesh2_kg.7__684__AT4G34215.2
Length=948
Score = 1245 bits (674), Expect = 0.0
Identities = 764/807 (95%), Gaps = 7/807 (1%)
Strand=Plus/Plus
Query 116 ATGGAAGGAGGATCTATCACTCCCGGT------GAAGATAAACCGGAGATCCAATCTCCA 169
|||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 1 ATGGAAGGAGAATCTATAACTCCCGGTCCCGGCGAAGATAAACTGGAGATCCAATCTCCA 60
Query 170 ATTCCACCAAATCAGATCTTCATACTCTCTGGACAAAGCAATATGGCAGGACGCGGCGGC 229
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 ATTCCGCCAAATCAGATCTTCATACTCTCCGGACAAAGCAATATGGCCGGACGCGGCGGC 120
Query 230 GTCTTCAAAGACCACCACAACAATCGCTGGGTGTGGGATAAAATCCTTCCACCGGAATGC 289
||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GTCGTCAAAGATCACCACCACAATCGCTGGGTGTGGGATAAAATCTTTCCACCGGAATGC 180
Query 290 GCACCAAACTCATCGATCCTCCGCCTGTCCGCAGATCTCCGGTGGGAAGAAGCACACGAG 349
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 181 GCACCAAACTCATCGATCCTCCGCCTGAGCGCAGATCTCCGGTGGGAAGAAGCTCACGAG 240
Query 350 CCACTACACGTTGACATTGACACAGGTAAAGTGTGTGGAGTAGGTCCAGGAATGGCGTTC 409
||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 241 CCACTCCACGTTGACATCGACACCGGTAAAGTGTGTGGAATAGGTCCAGGAATGGCGTTC 300
Query 410 GCTAACGCGGTGAAGAATCGCCTGGAAACAGATTCGGCTGTGATCGGGTTGGTGCCGTGC 469
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GCAAACGCGGTGAAGAATCGCCTGGAAACAGATTCGGCTGTGATCGGGTTGGTTCCGTGC 360
Query 470 GCTTCCGGTGGAACGGCGATAAAAGAGTGGGAGCGTGGAAGCCACTTGTACGAGAGGATG 529
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 GCCTCCGGTGGAACGGCGATAAAACAGTGGGAGCGTGGAAGCCACTTGTACGAGAGGATG 420
Query 530 GTCAAGAGAACGGAGGAGAGTAGGAAATGCGGCGGAGAGATCAAGGCGGTGTTGTGGTAT 589
|| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 421 GTTAAGAGAACGGAGGAGAGTAGGAAATGCGGCGGGGAGATTAAGGCGGTGCTGTGGTAT 480
Query 590 CAAGGAGAGAGTGACGTGTTGGACATCCATGACGCCGAGAGCTACGGGAACAATATGGAT 649
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CAAGGAGAGAGTGACGTGTTGGACATCCATGACGCCGAGAGCTACGGGAGCAATATGGAC 540
Query 650 CGTTTGATTAAGAACCTCCGTCATGATCTCAACCTTCCTTCTCTTCCCATTATTCAGGTG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGTTTGATTAAGAACCTCCGTCATGATCTCAACCTTCCTTCTCTTCCCATTATTCAGGTG 600
Query 710 GCAATAGCATCGGGAGGAGGATACATAGATAAGGTGAGAGAAGCACAGTTGGGACTGAAA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 GCAATAGCATCGGGAGGAGGATACATAGATAAGGTGAGAGAAGCACAGTTGGGTCTGAAA 660
Query 770 CTGTCGAATGTGGTCTGTGTAGATGCTAAGGGATTGCCGCTAAAGTCCGACAATCTTCAC 829
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 661 CTTTCGAATGTGGTCTGTGTAGACGCTAAGGGATTGCCGCTAAAGTCTGACAATCTTCAC 720
Query 830 TTAACCACCGAGGCTCAAGTCCAGCTTGGTCTCTCCTTAGCTCAAGCTTACCTTTCCAAC 889
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 TTAACCACTGAGGCTCAAGTCCAGCTTGGTCTCTCCTTAGCACAAGCTTACCTTTCCAAC 780
Query 890 TTCTGCTAGACAATCAAGT-AAGTTCG 915
||||| ||||||||||| | ||| |||
Sbjct 781 TTCTGTTAGACAATCAATTGAAGATCG 807
> Ahg895283 jgi|Araly1|895283|Al_scaffold_0006_3279
Length=1140
Score = 147 bits (79), Expect = 2e-34
Identities = 90/95 (95%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 650 CGTTTGATTAAGAACCTCCGTCATGATCTCAACCTTCCTTCTCTTCCCATTATTCAGGTG 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 CGTTTGATTAAGAACCTCCGTCATGATCTCAACCTTCCTTCTCTTCCCATTATTCAGGTA 150
Query 710 GCAATAGCA--TCGGGAGGAGGATACATAGATAAG 742
||||| ||| |||||||||||||||| |||||||
Sbjct 151 GCAATTGCACATCGGGAGGAGGATACAGAGATAAG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5