BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34220.1
Length=2561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491249 jgi|Araly1|491249|fgenesh2_kg.7__682__AT4G34220.1 3965 0.0
> Ahg491249 jgi|Araly1|491249|fgenesh2_kg.7__682__AT4G34220.1
Length=2492
Score = 3965 bits (2147), Expect = 0.0
Identities = 2385/2500 (95%), Gaps = 15/2500 (1%)
Strand=Plus/Plus
Query 1 TGCTCCACTATCTCATAGATTTGGTGACCAGAACAACTTATCTCTTGAGTGGTTCAACCT 60
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1 TGCTCCACTATCTCATAGATTTGGTTACCAGAACAACTTATCACTTGAGTGGTTCAACCT 60
Query 61 CTATCTCTCTCTCTTTCTGCCATGAAAATGCAAAGCCAAATGTAATA-GTTAGAGAGGGA 119
||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 61 CTA--TCTCTCTCTTTCTGCTATGAAAATGCATAGCCAAATGTAATACTTTAGAGAGGGA 118
Query 120 GAAACCAAGAACTGAAAGACCATGACTTCCAACAGAAGCAACCTCCTGTTCTCATTAGTC 179
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 119 GATACCAAGAACTGAAAAACCATGACTTCCAACAGAAGCAACCTCCTGTTCTCATTAGCC 178
Query 180 CTCTTCCACTTTCTTTTTGTCCCCACACAACTCCAAGCTCTTAACACTGATGGTGTTCTT 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTCTTCCACCTTCTTTTTGTCCCCACACAACTCCAAGCTCTTAACACTGATGGTGTTCTT 238
Query 240 CTGCTTACTTTCAAATACTCCATCCTCACTGACCCTCTCTCTGTTCTACGCAATTGGAAC 299
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 239 CTGCTTACTTTCAAATACTCCATCCTCAGTGACCCTCTCTTTGTTCTACGCAACTGGAAC 298
Query 300 TATGATGATGCAACACCATGCTTGTGGACAGGTGTCACATGTACAGAGCTTGGGAAGCCT 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 TATGATGATGCAACACCATGCTTGTGGACAGGTGTCACTTGTACAGAGCTTGGGAAGCCT 358
Query 360 AACACACCAGACATGTTCAGAGTCACAAGCTTGGTACTTCCCAACAAACACCTTTTGGGT 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 AACACACCAGACATGTTCAGAGTCACAAGCTTGGTACTTCCCAACAAACATCTTTTGGGT 418
Query 420 TCCATCACTCCGGACTTGTTCTCGATTCCATATCTAAGGATCTTGGATCTGTCTAGCAAT 479
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 419 TCCATCACTCCGGACTTGTTCTCGATTCCCCATCTAAGGATCTTGGATCTGTCCAGCAAT 478
Query 480 TTCTTCAACGGGTCACTCCCGGACTCGGTGTTCAACGCCACTGAGCTTCAGAG-TATCTC 538
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 479 TTCTTCAACGGGTCACTCCCTGACTCGGTGTTCAACGCCACTGAGCTTCA-AGTTATCTC 537
Query 539 CCTTGGAAGCAACAATCTCTCTGGTGATTTGCCCAAGAGTGTCAACAGTGTGACTAATCT 598
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 CCTTGGAAGCAACAATATCTCTGGTGATTTGCCCAAGAGTGTCAACAGTGTGATTAATCT 597
Query 599 CCAGCTCTTGAATCTCTCAGCTAACGCATTTACTGGCGAAATTCCGCTCAACATCTCACT 658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 598 CCAGCTCTTGAATCTCTCAGCTAACGCATTTACTGGAGAAATTCCGCTCAACATCTCACT 657
Query 659 TCTGAAGAATCTAACGGTCGTTTCCTTGTCAAAAAACACCTTTTCAGGTGATATTCCAAG 718
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 658 TCTGAAGAATCTAACGGTCGTTTCCTTGTCAAAGAACTCCTTTTCAGGTGATATTCCAAG 717
Query 719 TGGTTTCGAAGCAGCAC-AGATTCTTGATCTTTCTTCAAATCTTCTCAACGGCTCTCTTC 777
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGGTTTCGAAGCAGTACAAG-TTCTTGATCTTTCTTCAAATCTTCTCAACGGCTCTCTTC 776
Query 778 CCAAGGATTTGGGAGGAAAAAGCCTGCATTACTTGAACTTATCACACAACAAAGTCCTCG 837
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 CCAAGGATTTGGGAGGAAAAAGTCTGCATTACTTGAACTTATCACACAACAAAGTCCTCG 836
Query 838 GCGAGATTTCTCCAAATTTTGCAGAGAAGTTTCCAGCAAATGCCACAGTCGATCTCTCCT 897
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 837 GCGAGATTTCTCCAGGTTTTGCAGAGAAGTTTCCAGCTAATGCCACAGTCGATCTCTCCT 896
Query 898 TTAACAACCTCACAGGCCCAATCCCAAGTTCCCTTTCTTTACTTAACCAAAAGGCTGAGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 897 ATAACAACCTCACAGGCCCAATCCCAAGTTCCCTTTCTTTACTTAACCAAAAGGCTGAAT 956
Query 958 CTTTTTCCGGTAACCAAGAGCTT-TGTGGGAAGCCATTGAAGATCCTTTGTTCAATTCCT 1016
||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||
Sbjct 957 CTTTTTCCGGTAACCAAGA-CTTGTGTGGGAAACCATTGAAGATCCTTTGCTCAATTCCT 1015
Query 1017 TCCACTCTTTCAAACCCTCCAAATATCTCTGAAACTACTTCACCAGCAATAGCAGTTAAA 1076
|||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1016 TCCACTCTTTCAAACCCTCCAAATGTCTCTGACACTACTTCACCGGCAATAGCAGTTAAA 1075
Query 1077 CCAAGAAGTACAGCTCCAATAAACCCTTTGACAGAAAAACCAAATCAGACAGGAAAAAGC 1136
|||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 1076 CCAAGAAGCACAGCTCCAATAAACCCTTTGACAGAGTCACCAAGTCAGACAGCAAAAAGT 1135
Query 1137 AAGCTAAAGCCAAGCACCATTGCCGCAATCACAGTTGCAGATATAGTTGGTCTAGCTTTC 1196
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1136 AAGCTAAAGCCAAGCACCATTGCCGCAATCACAGTAGCAGATATAGTTGGTCTAGCTTTC 1195
Query 1197 ATTGGTCTACTCGTGCTCTACGTATACCAAGTCAGGAAACGCAGAAGGTACCCAGAATCT 1256
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1196 ATTGGTCTACTCGTGCTATACGTATACCAGGTCAGGAAACGCAGAAGGTACCCAGAATCC 1255
Query 1257 AGCAAATTTAGCTTCTTCAAGTTCTGTCTGGAGAAAAACGAAGCCAAGAAATCGAAACCA 1316
|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGCAGATTCAGCTTCTTCAAATTCTGTCTGGAGAAAAACGAAGCCAAGAAATCGAAACCA 1315
Query 1317 AGCACCACTGAGGTCACAGTCCCAGAATCACCAGAGGCCAAAACGACATGCGGTTCATGC 1376
||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 1316 AGCGCCACGGAGGTCACAGTCCCAGAATCACCAGAGGCAAAAACGGCATGCGGTTCGTGC 1375
Query 1377 ATTATCTTGACCGGAGGAAGGTACGACGAGACATCGACATCAGAGAGCGACGTAGAGAAT 1436
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1376 ATAATCTTGACCGGAGGAAGGTACGACGAGACATCGACATCAGAGAGCGATGTAGAGAAT 1435
Query 1437 CAACAAACCGTTCAGGCATTCACTCGAACAGATGGTGGGCAACTGAAGCAGAGCTCCCAA 1496
|| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1436 CAGCAAACCGTTCAGGCATTCAGTCGAACAGATGGTGGGCAACTGAAACAGAGCTCCCAA 1495
Query 1497 ACTCAATTGGTTACAGTCGACGGCGAGACTCGGCTAGATCTAGACACTCTGCTAAAGGCA 1556
|||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1496 ACTCAACTAGTTACAGTCGACGGCGAGACTCGGCTAGATCTAGATACTCTACTAAAGGCA 1555
Query 1557 TCTGCTTACATATTGGGAACCACCGGAACCGGGATCGTGTATAAGGCGGTGCTGGAGAAC 1616
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1556 TCTGCTTATATATTGGGAACCACTGGAACCGGGATCGTGTATAAGGCGGTGCTGGAGAAC 1615
Query 1617 GGCACGGCATTCGCGGTGAGGCGGATCGAGACGGAGAGCTGTGCGGCTGCGAAACCCAAG 1676
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1616 GGCACGGCATTCGCGGTGAGGCGGATCGAGACGGAGAGCTGTGCGGCTGTGAAACCTAAG 1675
Query 1677 GAATTCGAGAGGGAGGTTCGTGCCATCGCTAAGCTTCGTCACCCAAATCTCGTCAGAATT 1736
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1676 GAATTCGAAAGGGAGGTTCGTGCCATCGCTAAGCTTCGACACCCAAATCTCGTCAGAATT 1735
Query 1737 CGTGGGTTCTGCTGGGGAGACGACGAGAAACTTCTCATTTCCGATTATGTTCCCAATGGC 1796
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 CGTGGGTTCTGTTGGGGAGACGACGAGAAACTTCTCATTTCCGATTATGTTCCCAATGGC 1795
Query 1797 AGCCTCCTCTGTTTCTTCACCGCCACTAAGGCAAGCTCAAGCTCATCTTCTTCGTCGTCA 1856
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1796 AGCCTCCTCTGTTTCTTCACCGCCACTAAGGCAAGCTCAAGCTCGTCTTCTTCGTCGTCA 1855
Query 1857 TTACAAAACCCTCTTACTTTTGA-AGCACGGCTCAAGATAGCAAGAGGAATGGCTAGAGG 1915
|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1856 TTACAAAACCCTCTTAGTTTTGAGA-CACGGCTCAAGATAGCAAGAGGAATGGCTAGAGG 1914
Query 1916 ACTATCTTACATCAATGAGAAGAAACAAGTGCACGGTAACATCAAGCCCAATAACATTCT 1975
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1915 ACTATCTTACATCAATGAGAAGAAACACGTGCACGGTAACATCAAGCCCAATAACATTCT 1974
Query 1976 CTTGAACGCTGAGAATGAGCCCATCATCACCGATTTAGGGCTAGACCGCCTCATGACACC 2035
| |||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1975 CCTGAACGTTGAGAATGAGCCCATCATCACCGATCTAGGGCTAGATCGCCTCATGACACA 2034
Query 2036 AGCGCGTGAATCTCACACCACTGGACCAACTTCGAGCTCACCGTACCAGCCACCGGAATG 2095
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 AGCGCGTGAGTCTCGCACCACTGGACCAACTTCGAGCTCACCGTACCAGCCACCGGAATG 2094
Query 2096 GTCCACAAGCCTGAAACCAAACCCTAAATGGGACGTTTACTCCTTTGGCGTCATACTTTT 2155
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2095 GTCCACAAGCCTGAAACCAAACCCTAAATGGGACGTTTATTCCTTTGGAGTCATACTTTT 2154
Query 2156 AGAACTTCTCACAAGCAAAGTGTTCTCGGTAGATCATGATATAGATCAGTTCTCAAACTT 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 AGAACTTCTCACAAGCAAAGTGTTCTCGGTAGATCATGATATAGATCAGTTCTCAAACTT 2214
Query 2216 ATCCGACTCTGCAGCGGAAGAGAATGGCCGGTTCTTGAGGTTAATCGACGGTGCAATTAG 2275
| ||| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2215 AACCGGTTCTGAAGCAGAAGAGAATGGCCGGTTCTTGAGGTTGATCGACGGTGCAATTAG 2274
Query 2276 GAGTGATGTCGCTCGCCATGAGGATGCTGCAATGGCGTGCTTTAGGTTAGGGATTGAATG 2335
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 GAGCGATGTGGCTCGCCATGAGGATGCTGCAATGGCGTGCTTTAGGTTAGGGATTGAATG 2334
Query 2336 TGTCTCTTCCTTGCCTCAGAAGCGACCATCCATGAAAGAATTGGTGCAAGTGTTGGAGAA 2395
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2335 TGTCTCTTCCTTGCCTCAGAAGCGACCGCCCATGAAAGAATTGGTGCAAGTGTTGGAGAA 2394
Query 2396 AATTTGTGTTTTAGTTTGATTTCTTAATTCGTATAGCCTAAGT-CGTTTTGGCAATATAG 2454
||| ||||||||||||||| ||||||| ||||| ||| || | ||||||||||||||||
Sbjct 2395 AATGTGTGTTTTAGTTTGAGTTCTTAAATCGTA--GCCCAAATTCGTTTTGGCAATATAG 2452
Query 2455 AAAGTT-ATGTGTTATGTATGTTTTAGATGTGTTGCTTAA 2493
||||| || |||||||||||||||||||||||||| |||
Sbjct 2453 AAAGTGGATTTGTTATGTATGTTTTAGATGTGTTGCATAA 2492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96558771075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5