BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34230.1
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944486 jgi|Araly1|944486|scaffold_700715.1 1797 0.0
Ahg479461 jgi|Araly1|479461|fgenesh2_kg.3__2162__AT3G19450.1 634 0.0
> Ahg944486 jgi|Araly1|944486|scaffold_700715.1
Length=1114
Score = 1797 bits (973), Expect = 0.0
Identities = 1069/1115 (96%), Gaps = 8/1115 (1%)
Strand=Plus/Plus
Query 39 AGAAAGAATCATCAAAAAATGGGAATAATGGAGGCAGAGAGGAAAACAACAGGCTGGGCT 98
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AGAAAGAATCATC-AAAAATGGGAATAATGGAGGCAGAGAGGAAAACAACAGGCTGGGCT 62
Query 99 GCCAGAGACCCATCTGGGATC-CTCTCTCCTTACACTTACACTCTTAGAGAGACTGGACC 157
|| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 63 GCAAGAGATCCATCTGGGA-CTCTCTCTCCTTACACTTACACTCTTAGAGAGACTGGACC 121
Query 158 AGAGGATGTGAACATAAGAATCATTTGCTGTGGAATCTGCCACACCGATCTTCATCAAAC 217
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 122 AGAGGATGTGAACATAAGAATCATTTGCTGTGGAATCTGCCACACTGATCTTCATCAAAC 181
Query 218 TAAAAATGATCTTGGCATGTCTAATTACCCCATGGTTCCTGGGCATGAAGTGGTAGGGGA 277
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 182 CAAAAATGATCTTGGCATGTCTAACTACCCCATGGTTCCAGGGCATGAAGTGGTAGGTGA 241
Query 278 AGTAGTGGAGGTGGGATCAGATGTGAGCAAGTTCACCGTAGGGGACATAGTTGGAGTTGG 337
||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 242 AGTGGTGGAGGTTGGATCAGATGTGAGCAAGTTCACTGTAGGTGACATAGTTGGAGTTGG 301
Query 338 TTGCCTCGTTGGATGTTGCGGAGGTTGTAGCCCCTGCGAGAGAGATCTGGAACAGTATTG 397
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 302 TTGCCTCGTTGGATGTTGCGGAGGTTGTAGCCCTTGCGAGAGAGATCTGGAACAGTATTG 361
Query 398 TCCAAAGAAGATTTGGAGCTACAATGATGTTTACATCAATGGTCAACCTACACAAGGCGG 457
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 362 TCCAAAGAAGATTTGGAGCTACAACGATGTTTACATCGATGGTCAACCTACACAAGGCGG 421
Query 458 CTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTCAAGATTCCAGAAGGAATGGC 517
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 422 GTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGC 481
Query 518 GGTTGAGCAGGCTGCGCCGCTACTGTGCGCTGGTGTGACTGTGTACAGTCCACTGAGCCA 577
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 482 GGTTGAGCAGGCTGCGCCACTACTGTGCGCTGGTGTGACGGTGTATAGTCCACTGAGCCA 541
Query 578 CTTTGGTCTGAAACAACCAGGCCTAAGAGGAGGTATACTAGGGTTAGGTGGAGTCGGTCA 637
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 542 CTTCGGTCTGAAACAACCAGGCCTAAGAGGAGGCATACTAGGGTTAGGTGGAGTTGGTCA 601
Query 638 CATGGGTGTGAAAATAGCCAAAGCAATGGGTCACCATGTGACTGTCATAAGCTCATCAAA 697
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 602 CATGGGTGTGAAAATAGCCAAAGCAATGGGTCACCATGTGACTGTCATTAGCTCATCAAA 661
Query 698 CAAGAAGAGAGAAGAGGCAT-TGCAAGATCTTGGAGCTGATGATTACGTGATCGGATCCG 756
|||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |
Sbjct 662 CAAGAAGAGAGAAGAGGC-TCTGCAAGACCTTGGAGCTGATGATTACGTGATCGGATCTG 720
Query 757 ACCAAGCGAAGATGAGCGAATTGGCTGATTCGTTGGATTACGTAATTGACACGGTGCCTG 816
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 ACCAAGCAAAGATGAGCGAATTGGCTGATTCGTTGGATTACGTAATTGACACGGTTCCTG 780
Query 817 TTCATCATGCACTTGAGCCATATTTGTCTCTGCTTAAGCTTGATGGTAAACTCATTCTCA 876
||||||| ||||||||||| |||||||||||||||||||||||||| || || |||||||
Sbjct 781 TTCATCACGCACTTGAGCCTTATTTGTCTCTGCTTAAGCTTGATGGGAAGCTTATTCTCA 840
Query 877 TGGGAGTTATCAACAATCCATTACAGTTTCTCACTCCTCTGCTTATGCTTGGGAGGAAAG 936
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 841 TGGGAGTTATCAACAATCCCTTGCAGTTTCTTACTCCTCTGCTTATGCTTGGGAGGAAAG 900
Query 937 TGATAACGGGGAGCTTCATAGGGAGCATGAAGGAGACAGAGGAGATGCTTGAGTTCTGTA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGATAACGGGGAGCTTCATAGGGAGCATGAAGGAGACAGAGGAGATGCTTGAGTTCTGTA 960
Query 997 AAGAAAAGGGTTTGAGTTCGATTATCGAAGTTGTGAAGATGGATTATGTTAACACTGCGT 1056
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 961 AAGAAAAGGGATTGAGTTCGATCATCGAAGTTGTGAAGATGGATTATGTTAACACTGCGT 1020
Query 1057 TTGAGAGACTCGAGAAGAACGATGTGCGTTATAGGTTCGTCGTTGATGTCGAAGGAAGCA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTGAGAGACTCGAGAAGAACGATGTGCGTTATAGGTTCGTCGTTGATGTCGAAGGAAGCA 1080
Query 1117 ATCTCGACGCTTGATAT-CATGAAA-CTCGAGGCT 1149
|| ||||||||||| || ||||||| |||||||||
Sbjct 1081 ATTTCGACGCTTGA-ATTCATGAAAACTCGAGGCT 1114
> Ahg479461 jgi|Araly1|479461|fgenesh2_kg.3__2162__AT3G19450.1
Length=1424
Score = 634 bits (343), Expect = 0.0
Identities = 865/1108 (78%), Gaps = 72/1108 (6%)
Strand=Plus/Plus
Query 51 CAAAAAATGGGAA-T-AATGGAGGCAGAGAGGAAAACAACAGGCTGGGCTGCCAGAGACC 108
||||||||||||| | || ||||| ||| | ||| | ||| |||||||| ||||| |
Sbjct 231 CAAAAAATGGGAAGTGAA-GGAGG-AGAAAAGAAGGCTTTAGGATGGGCTGCAAGAGATC 288
Query 109 CATCTGG-GATCCTCT-CTCCTTACACTTACACTCTT-AGAGAG-ACTGGACCAGAGGAT 164
| ||||| | | || | |||||||| | |||||| || || ||| || ||| | || |||
Sbjct 289 CTTCTGGTG-TTCT-TGCTCCTTACTCCTACACT-TTAAG-GAGCACCGGAGCTGATGAT 344
Query 165 GTGAACAT-AAGAATCATTTGCTGTGGAATCTGCCACACCGATCTTCATCAAACTAAAAA 223
||| | || ||| | || ||||||||||| ||||| || ||| | || || | ||||||
Sbjct 345 GTGTATATAAAG-GTTATATGCTGTGGAATATGCCATACTGATATCCACCAGATTAAAAA 403
Query 224 TGATCTTGGCATGTCTAATTACCCCATGGTTCCTGGGCATGAAGTGGTAGGGGAAGTAGT 283
||||||||| ||||||||||| || |||||||||||||| || |||||||| || || ||
Sbjct 404 TGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACGAGGTGGTAGGTGAGGTGGT 463
Query 284 GGAGGTGGGATCAGATGTGAGCAAGTTCACCGTAGGGGACATAGTTGGAGTTGGT-TGCC 342
||| |||||||||||||||||||||||||||||||| || |||| ||||| || ||
Sbjct 464 GGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATGTAGTCGGAGTCGGCGTGAT 523
Query 343 TCGTTGGATGTTGCGGAGGTTGTAGCCCCTGCGAGAG-AGATCTGGAACAGTATTGTC-C 400
| || ||||| |||||| | || | || ||| || ||| || || ||||| ||| |
Sbjct 524 T-GTCGGATGCTGCGGAAGCTGCAAACCATGC-AGCTCAGAACTTGAGCAGTACTGTAAC 581
Query 401 AAAGAAGATT-TGGAGCTACAATGATGTTTACATCAATGGTCAACCTACACAAGGCGGCT 459
|| || || | ||||| ||||||||||| |||| | |||| |||| |||||||| || |
Sbjct 582 AA-GA-GAATCTGGAGTTACAATGATGTCTACACCGATGGAAAACCCACACAAGGTGGAT 639
Query 460 TCGCTAA-AGCCACCG-TCGTTCAC-CAAAAGTTTGTGGTCAAGATTCCAGAAGGAATGG 516
|||| | | ||| | |||| || |||||||||||||| |||||||||||||||||||
Sbjct 640 TCGCCGACA-CCAT-GATCGT-CAATCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGG 696
Query 517 CGGTTGAGCAGGCTGCGCCGCTACTGTGCGCTGGTGTGACTGTGTACAGTCCACTGAGCC 576
|||| ||||||||||| ||||| || ||||| || || || || |||||||| ||||||
Sbjct 697 CGGTGGAGCAGGCTGCACCGCTGCTATGCGCCGGAGTAACCGTTTACAGTCCGTTGAGCC 756
Query 577 ACTTT-GGTCTGAAA--CAACCAGGC-CTAAGAGGAGGTATACTAGGGTTAGGTGGAGTC 632
| ||| ||||| || ||| ||| | || |||||| || |||||||||||||||||
Sbjct 757 A-TTTCGGTCT-AATGGCAAGTGGGCTC-AA-AGGAGGGATTCTAGGGTTAGGTGGAGTA 812
Query 633 GGTCACATGGGTGTGAAAATAGCCAAAGCAATGGGTCACCATGTGACTGTCATAAGCTCA 692
|| |||||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 813 GGACACATGGGTGTGAAGATAGCTAAAGCAATGGGACATCATGTGACTGTGATAAGCTCA 872
Query 693 TCAAACAAGAAGAGAGAAGAGGCATTGCAAGATCTT-GGAGCTGATGATTACGTGATCG- 750
||| | ||||| | |||||| ||| || || || || ||||||||||| || ||| | |
Sbjct 873 TCAGATAAGAAAAAAGAAGAAGCAATGGAACAT-TTAGGAGCTGATGACTATGTGGT-GA 930
Query 751 GATCCGA-CCAAGC-GAAGATG-AGCGAATTGGCTGATTCG-TTGGATTACGTAATTGAC 806
| || || ||| || || |||| | || | | | ||||| ||| | ||| | || |||
Sbjct 931 GCTCTGATCCA-GCAGA-GATGCAAAGACTCG-CAGATTCTCTTG-ACTACATCATCGAC 986
Query 807 ACGGTGCCTGT-TCATCATGCACTTGAGCCATATTT-GTCTCTG-CTTAAGCTTGATGGT 863
|| || ||||| | ||| | || ||||| || || | || || ||||| || |||||
Sbjct 987 ACCGTACCTGTGTT-TCACCCTCTCGAGCCTTACTTAG-CT-TGTCTTAAACTCGATGGG 1043
Query 864 AAACTCATTCTCATGGGAGTTATCAACAATCCA-TTACAGTTTCTC-ACTCCTCTGCTT- 920
||| | ||||||||||| |||||||||| ||| || ||||| || |||||||| | |
Sbjct 1044 AAATTGATTCTCATGGGTGTTATCAACACTCCTCTT-CAGTT-CTTGACTCCTCT-CGTC 1100
Query 921 ATGCTTGGGAGGAAAGTGATAACGGGGAGCTTCATAGGGAGCATGAAGGAGACAGAGGA- 979
|| |||||||||||||||||| |||||||||||||||||||||| || |||||||| ||
Sbjct 1101 ATTCTTGGGAGGAAAGTGATATCGGGGAGCTTCATAGGGAGCATTAAAGAGACAGAAGAA 1160
Query 980 GATGCTTGAG-TT-CTGTAAAGA-AAAGGGTTTGA-GTTCGATTATCGAAGTTGTGAAGA 1035
| || ||| | || ||| ||||| |||||| || | || ||| || ||| ||||||||
Sbjct 1161 G-TG-TTG-GCTTTCTGCAAAGAGAAAGGGCTT-ACGT-CGACCATTGAAACTGTGAAGA 1215
Query 1036 TGGATTATGTTAACACTGCGTTTGAGAGACTCGAG-AAGAACGATGTGCGTTATAGGTTC 1094
| ||| | ||||||||||||||||||| || || ||||||||||| ||||| || ||
Sbjct 1216 TTGATGAACTTAACACTGCGTTTGAGAGGCTT-AGCAAGAACGATGTTCGTTACAGATTT 1274
Query 1095 GTCGTTGATGTCGAAGGAAGCAATCTCG 1122
||||||||||| | ||||| || ||||
Sbjct 1275 GTCGTTGATGTTGCTGGAAGTAACCTCG 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48644842092
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5