BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34240.1
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944483 jgi|Araly1|944483|scaffold_700712.1 2617 0.0
> Ahg944483 jgi|Araly1|944483|scaffold_700712.1
Length=1687
Score = 2617 bits (1417), Expect = 0.0
Identities = 1603/1694 (95%), Gaps = 8/1694 (0%)
Strand=Plus/Plus
Query 162 TTTTTAACTGAACCCAAGTCATGACGAAGCTTCTAGAGATTAATCATATTCAAACCCTTT 221
|||||||||||||||||||||||||||||| ||||||||| |||| | | ||||||
Sbjct 1 TTTTTAACTGAACCCAAGTCATGACGAAGCCTCTAGAGATGAATC--A-T---GCCCTTT 54
Query 222 GTTTTGCCAAGGGTTTTTCTCCTGCCAGATTAAATGTTGCAACTTCACCTTTTCGGATAT 281
||||||||||||||||||||| | ||||||||||||||||||||||||| |||| |||||
Sbjct 55 GTTTTGCCAAGGGTTTTTCTCGTACCAGATTAAATGTTGCAACTTCACCCTTTCTGATAT 114
Query 282 CTCGTCGTGGTGGTGGTGGATATTGCAGCAATGCTTGTATCCCTTATCGGTTGAAATTTA 341
||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 115 CTCGTGGTGGTGGTGGTGGATATTGCAGCAATACTTGTATCCCTTATCGCTTGAAATTTA 174
Query 342 CTTGTTATGCAACACTATCTGCTGTGGTAAAGGAGCAAGCATCAGACTTTAG-TGGAAAA 400
|||| ||||||||||||||||||||||||||||||||| |||||| |||| | |||||||
Sbjct 175 CTTGCTATGCAACACTATCTGCTGTGGTAAAGGAGCAAACATCAG-CTTTTGATGGAAAA 233
Query 401 GAAGCAGCTTTGCTTGTAGATGAGCTCAGAAGCAACTTCAACTCTGGCAGAACGAAGAGC 460
||||||||||||||||| |||||||||||||||||||| ||| | || ||||| ||||||
Sbjct 234 GAAGCAGCTTTGCTTGTTGATGAGCTCAGAAGCAACTTTAACACCGGTAGAACAAAGAGC 293
Query 461 TACGAGTGGAGAATTTCTCAGCTTCAAAACATTGCTAGGATGATTGATGAGAAGGAGAAA 520
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 294 TATGAGTGGAGAATTTCTCAGCTTCAAAGCATTGCTAGGATGATTGATGAGAAGGAGAAA 353
Query 521 TGCATCACCGAAGCTTTGTATCAAGATCTTTCTAAGCCTGAGCTTGAAGCTTTTCTAGCT 580
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 354 TGTATCACCGAAGCTTTGTATCAAGACCTTTCCAAGCCTGAGCTTGAAGCTTTTCTAGCT 413
Query 581 GAGATTTCGAATACAAAATCATCCTGTATGCTTGCAATCAAAGAGTTAAAGAACTGGATG 640
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 414 GAGATTTCGAATACAAAATCATCCTGTATGCTTGCAATCAAAGAGTTGAAGAATTGGATG 473
Query 641 GCTCCAGAAACGGTCAAAACTTCTGTGACAACATTTCCCTCGTCTGCACAAATAGTCTCA 700
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 474 GCTCCAGAAACGGTCAAAACTTCTGTGACGACATTTCCCTCGTCTGCAGAAATAGTCTCA 533
Query 701 GAACCGCTTGGAGTTGTTTTGGTTATTTCAGCCTGGAATTTCCCTTTCTTATTGTCTGTC 760
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 534 GAGCCGCTAGGAGTTGTTTTGGTTATCTCAGCCTGGAATTTCCCTTTCTTATTGTCTGTC 593
Query 761 GAGCCAGTCATTGGAGCTATTGCAGCTGGTAATGCGGTTGTGCTAAAACCTTCTGAAATT 820
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 594 GAGCCAGTCATTGGAGCTATTGCAGCTGGTAATGCGGTTGTGCTTAAACCTTCTGAAATC 653
Query 821 GCTCCAGCAGCATCTTCTCTTTTAGCAAAGTTGTTTAGTGAATACTTGGACAATACAACA 880
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 654 GCTCCAGCAGCATCTTCTCTTTTAGCAAAGTTGTTCAGTGAATACTTGGACAATACAACA 713
Query 881 ATCAGAGTTATCGAGGGAGGAGTCCCTGAAACAACGGCACTACTGGATCAAAAATGGGAC 940
||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 714 ATCCGAGTTATAGAGGGAGGAGTCCCTGAAACAACAGCACTACTGGATCAAAAATGGGAA 773
Query 941 AAGATCTTTTTCACTGGTGGAGCAAGAGTTGCTCGCATTATAATGGCTGCGGCTGCGAGA 1000
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 774 AAGATCTTCTTCACTGGTGGAGCAAGAGTTGCTCGCATTATAATGGCTGCAGCTGCGAAA 833
Query 1001 AATCTTACTCCAGTGGTTCTCGAACTTGGTGGGAAGTGCCCAGCTCTTGTTGATTCAGAT 1060
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 834 AATCTTACTCCAGTGGTTCTCGAACTTGGTGGAAAGTGCCCAGCTCTTGTTGATTCAGAT 893
Query 1061 GTTAATCTACAAGTGGCTGCTAGGAGGATCATTGCAGGGAAATGGGCTTGTAACAGTGGA 1120
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 894 GTTAATCTACAAGTAGCTGCTAGGAGGATCATAGCAGGGAAATGGGCTTGTAACAGTGGA 953
Query 1121 CAGGCTTGCATTGGTGTTGATTACGTGATCACAACAAAGGATTTTGCATCAAAATTGATA 1180
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CAGGCTTGCATTGGCGTCGATTACGTGATCACAACAAAGGATTTTGCATCAAAATTGATA 1013
Query 1181 GATGCTCTGAAGACTGAACTGGAGACATTTTTTGGGCAAAACGCATTAGAATCAAAGGAC 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GATGCTCTGAAGACTGAACTGGAGACATTTTTTGGGCAAAACGCATTAGAATCAAAGGAC 1073
Query 1241 CTGTCGCGGATTGTGAACTCTTTCCACTTCAAAAGGTTGGAAAGTATGTTAAAAGAGAAT 1300
||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1074 CTGTCACGGATTGTGAACTCTTTCCACTTCAAACGGTTGGAGAGTATGTTAAAAGAGAAT 1133
Query 1301 GGAGTAGCCAACAAAATTGTTCATGGTGGCCGAATAACCGAAGATAAACTTAAAATATCA 1360
||||| ||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 1134 GGAGTCGCCAACAAAATTGTTCATGGTGGCCAAACAACCGAAGATAAACTAAAAATATCT 1193
Query 1361 CCAACAATACTACTGGATGTGCCTGAAGCATCTTCCATGATGCAGGAAGAGATATTTGGA 1420
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1194 CCAACGATTCTACTGGATGTGCCAGAAGCATCTTCCATGATGCAGGAAGAGATATTTGGA 1253
Query 1421 CCTTTACTTCCCATAATTACGGTACAAAAGATTGAAGATGGCTTTCAGGTTATACGTTCA 1480
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1254 CCTTTACTTCCCGTAATTACGGTGCAAAAGATTGAAGATGGCTTTCAGGTTATACGTTCA 1313
Query 1481 AAGCCAAAGCCTTTAGCAGCGTATCTCTTCACAAACAACAAAGAGTTGGAGAAACAATTC 1540
|||||||||||| ||||||||||||| |||||||||| || ||||||| |||||||||||
Sbjct 1314 AAGCCAAAGCCTCTAGCAGCGTATCTGTTCACAAACAGCACAGAGTTGCAGAAACAATTC 1373
Query 1541 GTGCAGGACGTATCAGCAGGAGGAATTACCATCAATGACACTGTCTTACACGTGACTGTA 1600
|||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1374 GTGCAGAACGTATCTGCAGGAGGAATGACCATCAATGACACTGTCTTACACGTAACTGTA 1433
Query 1601 AAAGATCTGCCATTTGGTGGGGTTGGGGAGAGTGGGATCGGTGCTTACCATGGGAAATTC 1660
|||||| |||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1434 AAAGATTTGCCATTTGGTGGGGTAGGGGAGAGCGGGATCGGTGCTTACCACGGGAAATTC 1493
Query 1661 TCGTATGAGACGTTTAGCCATAAGAAAGGAGTTCTTTACCGGAGCTTTTCAGGGGACGCG 1720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1494 TCGTATGAGACGTTTAGCCATAAGAAAGGAGTACTTTACCGGAGCTTTTCAGGGGACGCG 1553
Query 1721 GATCTTAGATATCCTCCTTACACACCAAAAAAGAAGATGGTGCTTAAGGCTTTGCTCTCT 1780
||||| |||||||||||||||||||| |||||||||||||| || || |||||| |||||
Sbjct 1554 GATCTAAGATATCCTCCTTACACACCCAAAAAGAAGATGGTTCTGAAAGCTTTGATCTCT 1613
Query 1781 TCAAACATATTTGCTGCCATTTTGGCTTTCTTTGGGTTCTCTAAAGACTCATGATCACAT 1840
||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1614 TCAAACATATTTGCTGCTATCTTGGCTTTCTTTGGGTTATCTAAAGAGTCATGATCACAT 1673
Query 1841 GTTATAATCACTGA 1854
||||||||||||||
Sbjct 1674 GTTATAATCACTGA 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76142399755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5