BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34250.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491244 jgi|Araly1|491244|fgenesh2_kg.7__677__AT4G34250.1 2604 0.0
Ahg480389 jgi|Araly1|480389|fgenesh2_kg.3__3090__AT2G15090.1 929 0.0
> Ahg491244 jgi|Araly1|491244|fgenesh2_kg.7__677__AT4G34250.1
Length=1727
Score = 2604 bits (1410), Expect = 0.0
Identities = 1651/1762 (94%), Gaps = 38/1762 (2%)
Strand=Plus/Plus
Query 17 CACATCAAGAATTTAAATCACTAAAATGGATTACCCC-ATGAAGAAGGTAAAAATCTTTT 75
|||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1 CACACCAAGAATTTATATCACTAAAATGGATT-CCCCGATGAAGAAGGTAAAAATCTTTA 59
Query 76 TCAACTACCTCATGGCGCATCGCTTCAAGCTCTGCTTCTTACCATTAATGGTTGCTATAG 135
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 TCAACTACCTCATGGCACATCGCTTCAAGCTCTGCTTCTTACCATTAATGGTTTCTATAG 119
Query 136 CCGTGGAGGCGTCTCGTCTTTCCACACAAGATCTCCAAAACTTTTACCTCTACTTACAAA 195
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 CCATGGAGGCGTCTCGTCTTTCCACACAAGATCTCCAAAACCTTTACCTCTACTTACAAA 179
Query 196 ACAACCA-CACATCTCTAACCATGTTCTTCCTTTACCTCGCTCTCGGGTCGACTCTTTAC 254
|||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 180 ACAA-CATCACATCTCTAACCATGTTCTTTCTTTATCTCGCTCTCGGGTCGACTCTTTAC 238
Query 255 CTCATGACCCGGCCCAAACCCGTTTATCTCGTTGACTTTAGCTGCTACCTCCCACCGTCG 314
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTCATGACCCGACCCAAACCCGTTTATCTCGTTGACTTTAGCTGCTACCTCCCACCGTCG 298
Query 315 CATCTCAAAGCCAGCACCCAGAGGATCATGCAACACGTAAGGCTTGTACGAGAAGCAGGC 374
||||||||||| |||| ||| | ||||||| | |||||||||| |||| |||||||||||
Sbjct 299 CATCTCAAAGCTAGCATCCAAAAGATCATGGACCACGTAAGGCGTGTAAGAGAAGCAGGC 358
Query 375 GCGTGGAAGCAAGAGTCCGATTACTTGATGGACTTCTGCGAGAAGATTCTAGAACGTTCC 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCGTGGAAGCAAGAGTCCGATTACTTGATGGACTTCTGCGAGAAGATTCTAGAACGTTCC 418
Query 435 GGTCTAGGCCAAGAGACGTACGTACCCGAAGGTCTTCAAACTTTGCCACTACAACAGAAT 494
||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |
Sbjct 419 GGTCTAGGCCAAGAGACGTACATACCTGAAGGTCTTCAAAGTTTGCCACTACAACAGACT 478
Query 495 TTGGCTGTATCACGTATAGAGACGGAGGAAGTTATTATTGGTGCGGTCGATAATCTGTTT 554
|||||||| ||||||| ||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 479 TTGGCTGTGTCACGTAAAGAGACGGAAGAAGTTATCATTGGAGCGGTCGATAATCTGTTT 538
Query 555 CGCAACACGGGAATAAGCCCTAGTGATATAGGTATATTGGTGGTGAATTCAAGCACTTTT 614
|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 539 CGCAACACCGGAATAAGCCCGAACGATATAGGTATATTGGTGGTGAATTCAAGCACTTTC 598
Query 615 AATCCAACACCTTCGCTATCAAGTATCTTAGTGAATAAGTTTAAACTTAGGGATAATATA 674
|||||||| |||||| |||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 599 AATCCAACTCCTTCGTTATCAACTATCTTAGTGAATAAGTTTAAACTTAGGGATGATATA 658
Query 675 AAGAGCTTGAATCTTGGTGGGATGGGGTGTAGCGCTGGAGTCATCGCTATCGATGCGGCT 734
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 659 AAGAGCTTGAATCTTGGTGGGATGGGGTGTAGCGCTGGAGTCATCGCTATCGATGCTGCT 718
Query 735 AAGAGCTTGTTACAAGTTCATAGAAACACTTATGCTCTTGTGGTGAGCACGGAGAACATC 794
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 AAGAGCTTGTTACAAGTTCATAGAAACACTTATGCACTTGTGGTGAGCACGGAGAACATC 778
Query 795 ACTCAAAACTTGTACATGGGTAACAACAAATCAATGTTGGTTACAAACTGTTTGTTCCGT 854
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 ACTCAAAACTTGTACTTGGGTAACAACAAATCAATGTTGGTTACAAATTGTTTGTTCCGG 838
Query 855 ATAGGTGGGGCCGCGATTTTGCTTTCTAACCGGTCTATAGATCGTAAACGCGCAAAATAC 914
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 839 ATAGGTGGGGCCGCGATTTTGCTTTCTAACCAGTCTATAGATCGTAAACGCGCGAAATAC 898
Query 915 GAGCTTGTTCACACCGTGCGGGTCCATACCGGAGCAGATGACCGATCCTATGAATGTGCA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAGCTTGTTCACACCGTGCGGGTCCATACCGGAGCAGATGACCGATCCTATGAATGTGCA 958
Query 975 ACTCAAGAAGAGGATGAAGATGGCATAGTTGGGGTTTCCTTGTCAAAGAATCTACCAATG 1034
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 959 ACTCAAGAAGAGGATGAAGATGGCGTAGTCGGAGTTTCCTTGTCAAAGAATCTACCAATG 1018
Query 1035 GTAGCTGCAAGAACCCTAAAGATCAATATCGCAACTTTGGGTCCGCTTGTTCTTCCCATA 1094
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1019 GTAGCTGCAAGGACCCTAAAGATCAATATCGCAACTTTGGGTCCACTTGTTCTTCCCTTA 1078
Query 1095 AGCGAGAAGTTTCACTTCTTTGTGAGGTTCGTTAAAAAGAAGTTTCTCAACCCCAAGCTA 1154
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 1079 AGCGAGAAGTTCCACTTCTTTGTGAGGTTCGTTAAAAAGAAGTTTATCAACCCAAAACTC 1138
Query 1155 AAGCATTACATTCCGGATTTCAAGCTCGCATTCGAGCATTTCTGTATCCATGCGGGTGGT 1214
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGCACTACATTCCGGATTTCAAGCTCGCATTCGAGCATTTCTGTATCCATGCGGGTGGT 1198
Query 1215 AGAGCGCTAATTGATGAGATGGAGAAGAATCTTCATCTAACTCCACTAGACGTTGAGGCT 1274
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1199 AGAGCGCTAATTGATGAGATGGAGAAGAATCTTCATCTAACTCCATTAGACGTTGAGGCT 1258
Query 1275 TCAAGAATGACATTACACAGGTTTGGTAATACCTCTTCGAGCTCCATTTGGTACGAGTTG 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCAAGAATGACATTACACAGGTTTGGTAATACCTCTTCGAGCTCCATTTGGTACGAGTTG 1318
Query 1335 GCTTACACAGAAGCCAAAGGAAGGATGACGAAAGGAGATAGGATTTGGCAGATTGCGTTG 1394
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1319 GCTTACACAGAAGCCAAAGGAAGGATGAAGAAAGGAGATAGGATTTGGCAGATTGCGTTG 1378
Query 1395 GGGTCAGGTTTTAAGTGTAATAGTTCAGTTTGGGTGGCTCTTCGTAACGTCAAGCCTTCT 1454
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1379 GGGTCAGGTTTTAAGTGTAATAGTTCTGTTTGGGTGGCTCTTCGTAACGTCAAGCCTTCC 1438
Query 1455 ACTAATAATCCTTGGGAACAGTGTCTACACAAATATCCAGTTGAGATCGATATAGATTTA 1514
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GCTAATAATCCTTGGGAACACTGTCTACACAAATATCCAGTTGAGATCGATATAGATTTA 1498
Query 1515 AAAGAGTGAGTGATTCTATTTATCGTTATTAAGTTATGATACGAATTAAGAAGATAGAGA 1574
|||||||||| ||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 1499 AAAGAGTGAGCGATTCTATTGATCGTTAT-AAGTTATGATACGAATCAAGAAGATAGAG- 1556
Query 1575 CGTATAGACTGGTTTTATATATCGACTATCGTACTTTAATTTGGTCGGTCCAAATATGTA 1634
| | | | ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1557 -G------C-G-T---ATA----GACTATCGTACTTTAATTTGGTCGGTCCAAAAATGTA 1600
Query 1635 CAACTAATCTATCCGTTCTCTATGTATTGTTCTCTTTTAAGATTTCTTGttttttttttC 1694
||||||||||||| |||||| ||| ||||||||||||||||||| || |
Sbjct 1601 CAACTAATCTATCATTTCTCTCTGTGTTGTTCTCTTTTAAGATTT-TT-T---------- 1648
Query 1695 TTTGGTTGTTATGATGCTTAATTCCTCTCGTCAACTGTTTAAGAAT-AAGATTTGATGCG 1753
||||||| ||||||||||||||||||||||||| | ||||||| ||| |||||||||
Sbjct 1649 ---GGTTGTTGTGATGCTTAATTCCTCTCGTCAACTATATAAGAATTAAGTTTTGATGCG 1705
Query 1754 TGGTAGTGGACTTGTTTTCACA 1775
||||||||||||||||||||||
Sbjct 1706 TGGTAGTGGACTTGTTTTCACA 1727
> Ahg480389 jgi|Araly1|480389|fgenesh2_kg.3__3090__AT2G15090.1
Length=1633
Score = 929 bits (503), Expect = 0.0
Identities = 1026/1275 (80%), Gaps = 50/1275 (4%)
Strand=Plus/Plus
Query 261 ACCCGGCCCAAACCCGTTTATCTCGTTGACTT-TAGCTGCTACCTCCCACCGTCGCATCT 319
||||| || ||||||||||| || |||||||| | ||||||||||||||||||||||||
Sbjct 212 ACCCGTCCTAAACCCGTTTACCTTGTTGACTTCT-CCTGCTACCTCCCACCGTCGCATCT 270
Query 320 CAAAGCCAGCACCCAGAGGATCATGCAACACGTAAGGCTTGTACGAGAAGCA-GG-CGCG 377
||||| || | ||| | | ||| ||||| || | || | |||||||| || | |
Sbjct 271 CAAAGTTAGTATCCATACTCTAATGGGACACGCGAGACGTGCAAGAGAAGCAGGGATGTG 330
Query 378 -TGGAAG--C-AAGAGTCCGATTACTTGA-TGGACTTCTGCGAGAAGATTCTAGAACGTT 432
|||||| | ||||| ||| | || | | |||||| ||||||||||| |||||||
Sbjct 331 TTGGAAGAACAAAGAGAGCGACCA-TTTAGTTGACTTCCAAGAGAAGATTCTTGAACGTT 389
Query 433 CCGGTCTAGGCCAAGAGACGTACGTACCCGAAGGTCTTCA-AACTTTGCCACTACAAC-A 490
||||||| || ||||| || ||| | ||||| |||||||| | || ||||| || | |
Sbjct 390 CCGGTCTTGGTCAAGAAACATACATCCCCGAGGGTCTTCAGTGC-TTCCCACTTCAGCAA 448
Query 491 GAATTTGGCTG-TATCACGTATAGAGACGGAGGAAGTTATTATT-GGTGCGGTCGATAAT 548
| | ||| | | ||||||| |||||| || |||| || |||| || || | || |||
Sbjct 449 G-ACATGGGGGCT-TCACGTAAAGAGACTGAAGAAG-TAATATTCGGAGCTCTTGACAAT 505
Query 549 CTGTTTCGCAACACGGGAATAAGCCCTAG-TGATATAGGTATATTGGTGGTGAATTCAAG 607
|| ||||||||||| || ||| ||| | |||||| |||||||| ||||||||||| ||
Sbjct 506 CTTTTTCGCAACACCGGTGTAAAACCT-GATGATATTGGTATATTAGTGGTGAATTCTAG 564
Query 608 CACTTTTAATCCAACACC-T---TCGCTAT-CAAGTATCTTAGTGAATAAGTTTAAACTT 662
||| |||||||| || || | ||||| | || | | || ||||| |||| |||||
Sbjct 565 CACGTTTAATCCTACTCCATCACTCGCT-TCCATG-A--TT-GTGAACAAGTACAAACTC 619
Query 663 AGGGATAATATAAAGAGCTTGAATCTTGGTGGGATGGGGTGTAGCGCTGGAGTCATCGCT 722
|| || || || ||||| ||||||||||| |||||||| || || |||||||| || |||
Sbjct 620 AGAGACAACATCAAGAGTTTGAATCTTGGAGGGATGGGTTGCAGTGCTGGAGTTATAGCT 679
Query 723 ATCGATG-CGGCTAAGAGCTTGTTACAAGTTCATAGAAACACTTATGCTCTTGTGGTGAG 781
| |||| | |||||| | || ||||||||||||| |||||||||||| |||| || ||
Sbjct 680 GTTGATGTC-GCTAAGGGATTACTACAAGTTCATAGGAACACTTATGCTATTGTAGTAAG 738
Query 782 CACGGAGAACATCACTCAAAACTTGTACATGGGTAACAACAAATCAATGTTGGTTACAAA 841
||| |||||||||||||| ||||||||| |||| || |||||||||||| | || |||||
Sbjct 739 CACAGAGAACATCACTCAGAACTTGTACTTGGGGAAAAACAAATCAATGCTAGTCACAAA 798
Query 842 CTGTTTGTTCCGTATAGGTGGGGCCGCGATTTTGCTTTCTAACCGGTCTATAGATCGTAA 901
|||||||||||| | ||||| || ||| || ||||||| ||| | |||| ||| |||||
Sbjct 799 CTGTTTGTTCCGGGTTGGTGGTGCTGCGGTTCTGCTTTCAAACAGATCTAGAGACCGTAA 858
Query 902 ACGCGCAAAATACGAGCTTGTTCACACCGTGCGGGTCCATACCGGAGCAGATGACCGATC 961
||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| | ||
Sbjct 859 ACGCGCAAAATACGAGCTTGTTCACACGGTGCGGATCCATACCGGATCAGATGATAGGTC 918
Query 962 CTAT-GAATGTGCAACTCAAGAAGAGGATGAAGATGGCATAGTTGGGGTTTCCTTGTCAA 1020
|| | || |||||||| |||||||| ||||||||||| ||| |||| ||| ||||| |||
Sbjct 919 CT-TCGAGTGTGCAACACAAGAAGAAGATGAAGATGGTATAATTGGAGTTACCTTGACAA 977
Query 1021 AGAATCTACCAATGGTAGCTGCAAGAACCCTAAAGATCAATATCGCAACTTTGGGTCCGC 1080
|||||||||| ||||| |||||||| || || ||||||||||| |||||||||||||| |
Sbjct 978 AGAATCTACCTATGGTGGCTGCAAGGACTCTTAAGATCAATATTGCAACTTTGGGTCCTC 1037
Query 1081 TTGTTCTTCC-CAT-AAGCGAGAAGTTT-CACTTCTTTGTGAGGTTCGTTAAAAAGAAGT 1137
|||||||||| | | || |||||| || | ||||||| | | || || || |||||||
Sbjct 1038 TTGTTCTTCCAC-TGAAA-GAGAAGCTTGC-CTTCTTTATTACTTTTGTCAAGAAGAAGT 1094
Query 1138 -TTCTCAACCCCA-AGCTAAAGCA-T-TACATTCCGGATTTCAAGCTCGCATTCGAGCAT 1193
|| |||| || | || ||| | | | |||| || ||||||||||| || || ||||||
Sbjct 1095 ATT-TCAAGCC-AGAGTTAAGGAACTATACA--CCAGATTTCAAGCTTGCCTTTGAGCAT 1150
Query 1194 TTCTGTATCCATGCGGGTGGTAGAGCGCTAATTGATGAGATGGAGAAGAATCTTCATCTA 1253
||||||||||| || ||||| ||||| ||||| |||||| | |||||||||||| | ||
Sbjct 1151 TTCTGTATCCACGCTGGTGGAAGAGCTCTAATAGATGAGCTAGAGAAGAATCTTAAGCTT 1210
Query 1254 ACTCCACTAGACGTTGAGGCTTCAAGAATGACATTACACAGGTTTGGTAATACCTCTTCG 1313
|||| || |||| ||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1211 TCTCCGTTACACGTAGAGGCGTCAAGAATGACATTACACAGGTTTGGTAACACTTCTTCT 1270
Query 1314 AGCTCCATTTGGTACGAGTTGGCTTACACAGAAGCCAAAGGAAGGATGACGAAAGGAGAT 1373
||||| |||||||||||||||||||| |||||||| |||||| |||||| | ||||||||
Sbjct 1271 AGCTCAATTTGGTACGAGTTGGCTTATACAGAAGCTAAAGGACGGATGAAGGAAGGAGAT 1330
Query 1374 AGGATTTGGCAGATTGCGTTGGGGTCAGGTTTTAAGTGTAATAGTTCAGTTTGGGTGGCT 1433
||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||
Sbjct 1331 AGGATTTGGCAGATTGCTTTGGGGTCAGGTTTTAAGTGCAACAGTTCAGTCTGGGTGGCT 1390
Query 1434 CTTCGTAACGTCAAGCCTTCTA-CTAATAATCCTTGGGAACAGTGTCTACACAAATATCC 1492
|| || ||||| |||||||| | |||| | ||| |||||| | ||| | | | ||||||
Sbjct 1391 CTACGCAACGTTAAGCCTTC-AGCTAACAGTCCATGGGAAGACTGTATGGATAGATATCC 1449
Query 1493 AGTTGAGATCGATAT 1507
|||||||| |||||
Sbjct 1450 GGTTGAGATTGATAT 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5