BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34265.1
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491242 jgi|Araly1|491242|fgenesh2_kg.7__675__AT4G34265.1 1055 0.0
> Ahg491242 jgi|Araly1|491242|fgenesh2_kg.7__675__AT4G34265.1
Length=704
Score = 1055 bits (571), Expect = 0.0
Identities = 642/675 (95%), Gaps = 9/675 (1%)
Strand=Plus/Plus
Query 60 TAAAAAATGGCATGGCGCAGTGCAGCACGCTCTTTCGTCTCCGCTACAGCTAGAGCTCCG 119
|||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||
Sbjct 36 TAAAAAATGGCATGGCGCAGTGCAGCCCGGTCTTTCGTCTCCGCTACTGCTAGAACTCCG 95
Query 120 TCTCTCCGATCTCCGCCGCCAACGCTTCCCCGCCTCCGTCCTTCCCAATCCTCTTTGCCC 179
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 96 TCTCTCCGATCTCCGCCGGCAACGCTTCCCCGCCTCCGTCCTCCCCAATCCTCTTTGCCC 155
Query 180 CGCCGCCGATTTGCCTCTTTCACTAATCCCAGGAATTTGGGAGAGCTAGGATGCACAGAG 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 156 CGCCGCCGATTTGCCTCTTTCACTAATCCCAGGAATTTGGGAGAGCTTGGATGCACAGAG 215
Query 240 TCATTCTTGCCTCTGTACAATGTTGTGGCTGCAGCGAGACTCACATCTCACCTTAATGTT 299
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 216 TCTTTCTTGCCTCTGTACAATGTTGTGGCTGCAGCTCGACTCACATCTCACCTTAATGTT 275
Query 300 AATCTGCGAGCTTTCTGCGAACTCTCTAACGGGAATGGAAAAGATGGGTGATGGAAGTGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 AATCTGCGAGCTTTCTGCGAACTCTCTAACGGGAATGGAAAAGATGGGTGATGGAAGTGG 335
Query 360 ATTTTCAGTCGCTGGCAAGAGAGGTGCTACTGCTTTGTACTTGAATGCACAAAGTGG-AT 418
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 336 ATTTTCAGTCGCTGGCAAGAGAGGTGCTACTGCTTTGTACTTGAATGGACAAAGTGGGAT 395
Query 419 GCATCAGTTATCTTGAAGCAGTTGGAGACTTGAGAAAAGGGGTGTACCAAGAAGAACTCA 478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 396 GCATCAGTTATCTTGAAGCAGTTGGAGACTTGAAAAAAGGGGTGTACCAAGAAGAACTCA 455
Query 479 TTGGTTGTTTTGTGTTCCATTAGGAACCAAAAACTATAT-ACATTATTATCGATCTTCCT 537
|||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||
Sbjct 456 TTGGTTGTTTTGTGTTCCATTAGGAACCAAAAACTAAATTACATTATT-TCTATCTTCCT 514
Query 538 TCGCTTTTGTCAATTTCCAGTTTTAGAATATCACTGGATTTCTCTTCATATTTCTTGTTG 597
|| |||||| ||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 515 TCACTTTTGACAATTTCCAGTTTTAGAAT--C--TGGATTTCCCTTCATATTTCTTGTTG 570
Query 598 TTTAGCCCAATGGCTTTAAATACTTGAGGGTAGATTCAGCAAATTCTTGAAGAACCATTG 657
||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 571 TTTAGCCCAATGGCTTTGAATACTTGAGGGTAGATTCAGCATATTCTTCAAGAACCATTG 630
Query 658 TTTCATCGTTGTATTTATAATGTTA-TGAACTCCCTTCGGGTTTCCTGAAAGGAATTTAA 716
||||||| ||||||||||||||||| | | ||| |||||||||| |||||||||||||||
Sbjct 631 TTTCATCTTTGTATTTATAATGTTACTCA-CTCTCTTCGGGTTTACTGAAAGGAATTTAA 689
Query 717 AGAAAACTTTCTTAT 731
|||||||||||||||
Sbjct 690 AGAAAACTTTCTTAT 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26914779402
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5