BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34270.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491240 jgi|Araly1|491240|fgenesh2_kg.7__673__AT4G34270.1 1755 0.0
> Ahg491240 jgi|Araly1|491240|fgenesh2_kg.7__673__AT4G34270.1
Length=1152
Score = 1755 bits (950), Expect = 0.0
Identities = 1093/1160 (94%), Gaps = 18/1160 (2%)
Strand=Plus/Plus
Query 12 TTGGATAGTCCGGTTGGTCACACAAGTGAC-ATCGTCGGAGGAGAAAAGGTAGTGCC-AA 69
|||||||||||||||||||||| || |||| |||| ||||||||||||||||||||| ||
Sbjct 1 TTGGATAGTCCGGTTGGTCACAAAACTGACAATCGGCGGAGGAGAAAAGGTAGTGCCAAA 60
Query 70 TATTAGCCGGCGATTCAGATGGAGACGGTGGTCGATAAAGATG-TTCTGAAGTCTTCCGG 128
|||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 61 TATTTGCCGGCGATTCAGATGGAGACGGTGGTCGATAAAGA-GATTCTTAAGTCTTCCGG 119
Query 129 GGCTGAGCTTCTTCCCGACGGACGTCGAGGTTTACGCATCCATGACTGGGAGATCGAAAC 188
||||||||||||||||||||||||||| || || |||||||||| |||||||||||||||
Sbjct 120 GGCTGAGCTTCTTCCCGACGGACGTCGTGGGTTGCGCATCCATGGCTGGGAGATCGAAAC 179
Query 189 CCTCCGCGGCACGATTCTCACTTCTCTCGCTGTCGAAGAGTGGGaaaaaaaGCTTAAGAC 248
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 CCTCCGTGGCACGATTCTCACTTCTCTCGCTGTCGAAGAGTGGGAAGAAAAGCTTAAGAC 239
Query 249 ATCTCACTTACCTGAAATGGTTTTTGGCGAGAATGCATTAGTCCTTAAACACTTAGGTAG 308
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||
Sbjct 240 ATCTCACTTACCTGAAATGGTTTTTGGCGGGAATGCATTAGTCCTAAAACACTTAAGTAG 299
Query 309 CAACACTAAGATTCATTTTAATGCGTTTGACGCACTAGCTGGTTGGAAGCAGGAAGGGCT 368
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 300 CAACACTAAGATTCATTTTAATGCGTTTGACGCTCTAGCGGGTTGGAAGCAGGAAGGGCT 359
Query 369 TCCACCTGTTGAAGTTCCTGCTGCAGCACAATGGAAATTCAGGAGCAAGCCGTCTCAGCA 428
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 360 TCCACCTGTTGAAGTTCCTGCTGCGGCACAATGGAAATTCAGGAGCAAGCCGTCCCAGCA 419
Query 429 GGTGATACTAGATTATGATTACACGTTTACAACGCCATACTGTGGAAGTGAAGTAGTTGA 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTGATACTAGATTATGATTACACGTTTACAACGCCATACTGTGGAAGTGAAGTAGTTGA 479
Query 489 GAAAGACAAAGAAACGGTTGAGGCAAAAGCTAATCCAAAGGGGGAAGCTACTCTTCAGTG 548
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 GAAAGACAAAGAAGCGGTTGAGGCAAAAGCTAATCCGAAGGGGGAAGCTACTCTTCAGTG 539
Query 549 GGAGAACTGTGAAGATCAGATTGATTTGGCTGCTCTCTCACTTAAAGAACCTATTCTCTT 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGAGAACTGTGAAGATCAGATTGATTTGGCTGCTCTCTCACTTAAAGAACCTATTCTCTT 599
Query 609 CTATGATGAGGTAGTTTTGTATGAAGATGAACTGGCTGACAATGGAGTGTCACTTCTGAC 668
||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 600 CTATGATGAGGTAGTTTTGTATGAAGACGAGCTGGCTGACAATGGAGTGTCACTTTTGAC 659
Query 669 TGTGAAAGTGAGAGTCATGCCAAGCTCATGGTTCCTCCTCTTGCGATTTTGGCTGAGAGT 728
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 660 TGTGAAAGTGAGAGTCATGCCAAGCTCATGGTTCCTCCTCTTACGATTTTGGCTTAGAGT 719
Query 729 TGATGGTGTGCTTATGAGATTGAGAGAGACGAGAATGCATTATAGGTTTGGCGAAGATGA 788
|||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||
Sbjct 720 TGATGGTGTGCTTATGAGATTGAGAGAGACTAGAATGCATTATACGTTTGGCAAAGATGA 779
Query 789 GGCACCAACTGTTCTTCGTGAAAACTGTTGGAGAGAAGCAACATTTCAGTCTCTATCTGC 848
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GACACCAACTGTTCTTCGTGAAAACTGTTGGAGAGAAGCTACATTTCAGTCTCTATCTGC 839
Query 849 GAAAGGGTATCCAGTTGACTTAGCAGTCTGGAGCGACCCGAGCTCCATCAGTCAGAGGCT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAAGGGTATCCAGTTGACTTAGCAGTCTGGAGCGACCCGAGCTCCATCAGTCAGAGGCT 899
Query 909 TCCAGTGATTAAGCATACGACACAGAAACTGAAGATCCCTAGTAAAGTTTAAGCTGTTTA 968
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 900 TCCAGTGATTAAGCATACGACACAAAAACTGAAGATCCCTCGTAAAGTTTAAGCTGTTTA 959
Query 969 TAAAGTTGCAAATTATATCTAAAAGAGCGTACCGATGAGCTTTCT-TTACAGCCAAACAA 1027
||||||||||| ||| ||| |||||| || | ||||||||||||| || ||| |||| |
Sbjct 960 TAAAGTTGCAAGTTAAATCCAAAAGAACGGATCGATGAGCTTTCTATT-CAGTCAAA-A- 1016
Query 1028 ACTACTTACTATTGAATTTGTTAATGTAAGGAGTTACTCCACTGACTTATTGTGGTGGTT 1087
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1017 --TACTTACTATCGAATTTGTTAATGTAAGGAGTTACTCCAGTTACTTATTGTGGTGGTT 1074
Query 1088 TCATATGAACATTCAAAC-C-CTT--T-T-CACGTTGTTCTTACACTCTTATTGTTCCCT 1141
||||||||||| | |||| | ||| | | || ||| ||||||||||||||||| || |
Sbjct 1075 TCATATGAACACTGAAACGCTCTTCCTCTTCATGTTCTTCTTACACTCTTATTG--CCAT 1132
Query 1142 ACCTTGTTCCCACCATAATT 1161
|||| | |||||||||||||
Sbjct 1133 ACCTCGATCCCACCATAATT 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5