BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34280.1
Length=2579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944477 jgi|Araly1|944477|scaffold_700706.1 3808 0.0
> Ahg944477 jgi|Araly1|944477|scaffold_700706.1
Length=2400
Score = 3808 bits (2062), Expect = 0.0
Identities = 2289/2399 (95%), Gaps = 13/2399 (1%)
Strand=Plus/Plus
Query 69 ATCTTAAGATTTGATTGAATGGCTACGCTCACTGAAATAGCAACCCTTGAGGAGAAGTAT 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 ATCTTAAGATTTGATTGAATGGCTACGCTCACTGAAATAGCAACCCTTGAGGAGAAGTAT 64
Query 129 ATCGAATTGTGCAAGATGCATGGAATCCTACCCAACACTGCCATTTTATCTGCTTTCTTT 188
|| ||||| ||||||| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 65 ATTGAATTATGCAAGAAGCATGGCATCCTACCCAACACTGCCGTTTTATCTGCTTTCTTT 124
Query 189 GAGGCGGAGGTTAAAAAGTCAAGGAATCAAAGATGCATTATGAACCTTTACGTGGATAGA 248
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 125 GAGGCGGAGGTTAAAAAGTCAAGGAATCAAAGATGTATCATGAACCTTTATGTGGATAGA 184
Query 249 GTGAAGTACGATGACTATCTCCCGCTTCTCGAGTTATGCAATGAGATCAACACATCTGAG 308
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GTGAAGTACGATGACTATCACCCGCTTCTCGAGTTATGCAATGAGATCAACACATCTGAG 244
Query 309 GTACAAGGAATAGATCTATTTGTGAGATCCGCTTGTTCGTTAGAAGATCATTATGCATTG 368
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct 245 GTACAAGGAATAGATCTCTTTGTGAGATCCTCTTGTTCTTTAGAAGATCATTATGCATTG 304
Query 369 CCCTTAATCCGTTCCGTCAATCAAAAACTCCGAGTTGTTCATCTACATGACTCTTTCGGG 428
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TCCTTAATTCGTTCTGTCAATCAAAAACTCCGAGTTGTTCATCTACATGACTCTTTCGGG 364
Query 429 AAAAACTTCTGGCAGGACGTTTTCTTTCAAGGTTTGAGCTGCAAAGTGTTGAATGTGAGG 488
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 365 AAAAACTTCTGGCGGGACGTTTTCTTTCAAGGTTTGAGCTGCAAAGTTTTGAATGTGAGG 424
Query 489 TCTATGCATATCCATAAGCTTAACATCGTAGGAGAGTTCACACAGCTGCACACCCTTATA 548
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TCTATGCATTTCCATAAGCTTAACATCGTAGGAGAGTTCACACAGCTGCACACCCTTATA 484
Query 549 CTCGATAAGAACCGTATAGTTGGTTTTGGAGAAGACTGTTTTTCTTGCATGCCCAAATTG 608
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 485 CTCGATAAGAACCGTATAGTTGGTTTTGGGGAAGACTGTTTTTCTTGCATGCCCAAATTG 544
Query 609 ACATATCTTTCCATGTGTGACACTCTAGTGTCAGATCTTTGGACATCAGCTGCTGCTCTC 668
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 ACATATCTTTCGATGTGTGACACTCTAGTGTCAGATCTTTGGACATCAGCTGCTGCTCTC 604
Query 669 TTGAAACTCCCTTCTCTTAAGGAGCTCCGGTTTCAAATTTGGATCTCTTGCAGTGATTCT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TTGAAACTCCCTTCTCTTAAGGAGCTCCGGTTTCAAATTTGGATCTCTTGCAGTGATTCT 664
Query 729 AGCCCACTCAAT-TCAGAGTCATCACCATCATCATC-T--ACCA-AGGATGATATAAACA 783
||||||| ||| ||| ||||||| ||||||||||| | ||| || |||||| |||||
Sbjct 665 AGCCCAC-CAAAATCACAGTCATCGCCATCATCATCATCTACCGGAG-ATGATAAAAACA 722
Query 784 CATTTATTGAATCAGACCCTCCCGTTGAAGCAGATATGTGGGACGTTGCTGAACAGATGG 843
||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||
Sbjct 723 CATTTATTGAATCAGACCCTCCCATTGAAGCAGATATTTGGGACGTTGTTGAACAGATGG 782
Query 844 ATCCTAGTTTACCTGTCGAAGAGACTCTTCATAGCATGGATTTCTCGTATAAAATTCCTG 903
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 783 ATCCTAGTTTACCTGTTGACGAGACTCTTCATAGTATGGATTTCTCGTATAAAATTCCTG 842
Query 904 AGCAAGATGATTTGGATTCACATGTCTCTGTGTCTGCAGGGTTGAATGGAGAAGTACTCA 963
||||||||||||||||||||| | |||| |||||| ||| ||||||||||||||||||||
Sbjct 843 AGCAAGATGATTTGGATTCACGTATCTCCGTGTCTTCAGAGTTGAATGGAGAAGTACTCA 902
Query 964 TGAGGGAAAAGGTTAGGAGAGGGAAAATGCCGTACCAACCCAAAGATGTTTCACCCGTTG 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 CGAGGGAAAAGGTTAGGAGAGGGAAAATGCCGTACCAACCCAAAGATGTTTCACCCGTTG 962
Query 1024 A-TACGTTCACAAGGCAATTTGGGAATGTTGGGTTGAAATATATATCCTCTAAAGCATCA 1082
| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 963 AAT-CATTCACAAGGCAATTTGGGAATGTTGGGTTGAAATATATTTCCTCTAAAGCATCA 1021
Query 1083 CCGATCTGTTCTGAAAAGCATTACAGGATGTACATGATAAACTCTCTGCCCAAATTACAA 1142
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1022 CCGATATGTTCTGAAAAGCATTATAGGATGTACATGATAAACTCTCTGCCCAAATTACAA 1081
Query 1143 GTGTTGGACAATTTGGCCATCAGAAAGAGTGATAGAGATAAGGCCATTGAAACATATTCT 1202
||||||||||||||||| || ||||||||||||||||| | |||| ||||||||||||||
Sbjct 1082 GTGTTGGACAATTTGGCTATAAGAAAGAGTGATAGAGACAGGGCCTTTGAAACATATTCT 1141
Query 1203 GCAAACTTTGAGGACTTACCGTACAAGAGAAAGAAGGAAAGTGTAGTTAGAGTCCTTGAG 1262
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GCAAACTTTGAGGACTTACCATACAAGAGAAAGAAGGAAAGTGTAGTTAGAGTCCTTGAG 1201
Query 1263 AACCGTGAAAAAAGATCAAGCAAGGGGAAATCTCAGAATTCCTATAAAAGATCGCTTTGT 1322
|| || |||| |||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1202 AAGCGGGAAACAAGATCAAGCAAAGGGATATCTCAGAATTCCTATAAAAGATCGCTTTGT 1261
Query 1323 GCAGCTAAAATGGGATCGCCTGCTTCGCCTCTCTTGCATTCACTTCCTTTTTTGAGTAGT 1382
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GCAGCTAAAATGGGATCGTCTGCTTCGCCTCTCTTGCATTCACTTCCTTTTTTGAGTAGT 1321
Query 1383 AGGATTCAGCAGGAAGATGATAATAGTAGATTATGTCCAAGGCAGTTTGAGTATCATCCA 1442
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1322 AGGATTCATCAGGAAGATGATAATAGTAGATTAAGTCCAAGGCAGTTTGAGTACCATCCA 1381
Query 1443 CTAGATCCTAGCCTAATGGTATTTGGGACTTTGGATGGCGAGGTGGTTGTTCTCAATCAC 1502
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1382 CTAGATCCTAGCCTTATGGTATTTGGGACTTTGGATGGCGAGGTAGTTGTTCTCAATCAC 1441
Query 1503 GAAAGTGGGAAAATTTTCCGTTACATCCCATCTAATGGATCTCAAAGTACCATCTTGGGA 1562
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1442 GAAAGTGGGAAAATTGTCCGTTACATCCCATCTCATGGATCTCAAAGTACCATCTTGGGA 1501
Query 1563 CTTTGTTGGCTCAAGATATATCCATCTATGGTTATAGCTGGCTCAGCCAATGGCTCATTG 1622
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1502 CTTTGCTGGCTCAAGATGTATCCATCTATGGTTATAGCTGGCTCAGCCAATGGCTCTTTG 1561
Query 1623 AAGCTGTACGACATCCAAAAAGCGTCATCCACGGTTACTACTAGCAGTCATTCCACTTCT 1682
||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 1562 AAGCTGTACGACATCCAAAAAGCGTCATCAACGGTTGCTACTAGCAGTCATGCCACTTCT 1621
Query 1683 ---GGTTCTGTCACTTTTGATGAGTTTGACCAATTAACGTCGGTTCATGCTAATTCGACG 1739
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1622 TCTGGTTCTGTCACTTTTGATGAGTTTGACCAATTAACTTCGGTTCATGCTAATTCGACG 1681
Query 1740 GACCAACTATTTCTTGCTAGCGGATACTCGAAGGATGTTGCTTTGTATGACATTGGTAGG 1799
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1682 GACCAACTATTTCTTGCTAGCGGATACTCGAGGGATGTTGCTTTGTATGACATTGGTAGG 1741
Query 1800 GGAACACGCCTACAGGTTTTTGCTAATATGCATCAAGAGCATATTAACGTGGTGAAATTT 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 GGAACACGCCTACAGGTTTTTGCTAATATGCATCAAGAGCATATTAACGTGGTGAAATTT 1801
Query 1860 TCGAACCATTCCCCGTTTCTTTTTGCGACTTCTTCTTTCGATAAAGATGTTAAGCTTTGG 1919
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1802 TCGAACCATTCCCCGTTCCTTTTTGCGACTTCTTCTTTCGATAAAGATGTTAAGCTATGG 1861
Query 1920 GATTTGAGACAAGAGCCATCCCGACCATGCTACACCGCTTCTAGTACGAAAGGAAATGTA 1979
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1862 GATTTGAGACAAGAGCCATCCCGACCATGCTACACCGCTTCTAGTACCAAAGGAAATGTG 1921
Query 1980 ATGGTTTGCTTTTCTCCAGATGATCGTTATCTTCTAGCATCAGCCGTAGACAACGAGGTG 2039
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1922 ATGGTTTGCTTTTCTCCAGATGATCGTTATCTTCTAGCATCAGCCGTGGACAATGAGGTG 1981
Query 2040 AGGCAGCTTTTGACAGTAGATGGAAGGCTTCATCTGAACTTTGAGATAGTCCCAAGAGTA 2099
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 AGGCAGCTTTTGACAGTTGATGGAAGGCTTCATCTGAACTTTGAGATAGTCCCAAGAGTA 2041
Query 2100 AGCTCGATGAACTATACTCGATCATACTACATGAATGGTAATGACTACATCATAAGTGGA 2159
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2042 AGCTCAATGAACTATACCCGATCATACTACATGAATGGTAATGACTACATCATCAGTGGA 2101
Query 2160 AGCTGCGATGAGAATGTGATCCGTGTTTGTTGTGCTCAAACTGGAAGACGACTTAGGGAT 2219
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2102 AGCTGCGATGAAAATGTGATCCGTGTTTGTTGTGCTCAAACTGGAAGGCGCCTTAGGGAT 2161
Query 2220 GTAACTCTAGAGGGAAACGGCTCGGACTTTTCCATGATGTATGTTCAGTCTCTACGCGGT 2279
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2162 GTAACTCTAGAGGGAAACGGCTCGGACTTTTCCATGATGTTTGTTCAGTCTCTACGCGGT 2221
Query 2280 GACCCCTTCAGGGATTTCAATATGAGTGTATTGGCTGCGTACGCACGGTCAAGCTCACTT 2339
||||||||||||||||| || |||||||| || ||||| ||| |||||||||||||| |
Sbjct 2222 GACCCCTTCAGGGATTTTAACATGAGTGTTTTAGCTGCTTACACACGGTCAAGCTCAGTG 2281
Query 2340 TCTGAAATAGTCAAGGTGAATTTGTTAGCGTCAAGAGATTCTACAGCAGAAGAATCTCAT 2399
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2282 TCTGAAATAGTCAAGGTGAATTTGTTAGCGTCAAGAGATTCTACAGAAGAACAATCTCAT 2341
Query 2400 GGTCTCCGTTCCTACCCTTCAAGTAGCATGGGAGGCTGATGAT-AAAACCAAAAGAGAG 2457
||||| ||||| ||||| |||| |||||||||||||||||||| ||||||||| |||||
Sbjct 2342 GGTCTACGTTCTTACCCCTCAAATAGCATGGGAGGCTGATGATTAAAACCAAATGAGAG 2400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97244395485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5