BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34280.1 Length=2579 Score E Sequences producing significant alignments: (Bits) Value Ahg944477 jgi|Araly1|944477|scaffold_700706.1 3808 0.0 > Ahg944477 jgi|Araly1|944477|scaffold_700706.1 Length=2400 Score = 3808 bits (2062), Expect = 0.0 Identities = 2289/2399 (95%), Gaps = 13/2399 (1%) Strand=Plus/Plus Query 69 ATCTTAAGATTTGATTGAATGGCTACGCTCACTGAAATAGCAACCCTTGAGGAGAAGTAT 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5 ATCTTAAGATTTGATTGAATGGCTACGCTCACTGAAATAGCAACCCTTGAGGAGAAGTAT 64 Query 129 ATCGAATTGTGCAAGATGCATGGAATCCTACCCAACACTGCCATTTTATCTGCTTTCTTT 188 || ||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||| Sbjct 65 ATTGAATTATGCAAGAAGCATGGCATCCTACCCAACACTGCCGTTTTATCTGCTTTCTTT 124 Query 189 GAGGCGGAGGTTAAAAAGTCAAGGAATCAAAGATGCATTATGAACCTTTACGTGGATAGA 248 ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| Sbjct 125 GAGGCGGAGGTTAAAAAGTCAAGGAATCAAAGATGTATCATGAACCTTTATGTGGATAGA 184 Query 249 GTGAAGTACGATGACTATCTCCCGCTTCTCGAGTTATGCAATGAGATCAACACATCTGAG 308 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 185 GTGAAGTACGATGACTATCACCCGCTTCTCGAGTTATGCAATGAGATCAACACATCTGAG 244 Query 309 GTACAAGGAATAGATCTATTTGTGAGATCCGCTTGTTCGTTAGAAGATCATTATGCATTG 368 ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct 245 GTACAAGGAATAGATCTCTTTGTGAGATCCTCTTGTTCTTTAGAAGATCATTATGCATTG 304 Query 369 CCCTTAATCCGTTCCGTCAATCAAAAACTCCGAGTTGTTCATCTACATGACTCTTTCGGG 428 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 TCCTTAATTCGTTCTGTCAATCAAAAACTCCGAGTTGTTCATCTACATGACTCTTTCGGG 364 Query 429 AAAAACTTCTGGCAGGACGTTTTCTTTCAAGGTTTGAGCTGCAAAGTGTTGAATGTGAGG 488 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 365 AAAAACTTCTGGCGGGACGTTTTCTTTCAAGGTTTGAGCTGCAAAGTTTTGAATGTGAGG 424 Query 489 TCTATGCATATCCATAAGCTTAACATCGTAGGAGAGTTCACACAGCTGCACACCCTTATA 548 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 TCTATGCATTTCCATAAGCTTAACATCGTAGGAGAGTTCACACAGCTGCACACCCTTATA 484 Query 549 CTCGATAAGAACCGTATAGTTGGTTTTGGAGAAGACTGTTTTTCTTGCATGCCCAAATTG 608 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 485 CTCGATAAGAACCGTATAGTTGGTTTTGGGGAAGACTGTTTTTCTTGCATGCCCAAATTG 544 Query 609 ACATATCTTTCCATGTGTGACACTCTAGTGTCAGATCTTTGGACATCAGCTGCTGCTCTC 668 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 ACATATCTTTCGATGTGTGACACTCTAGTGTCAGATCTTTGGACATCAGCTGCTGCTCTC 604 Query 669 TTGAAACTCCCTTCTCTTAAGGAGCTCCGGTTTCAAATTTGGATCTCTTGCAGTGATTCT 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 TTGAAACTCCCTTCTCTTAAGGAGCTCCGGTTTCAAATTTGGATCTCTTGCAGTGATTCT 664 Query 729 AGCCCACTCAAT-TCAGAGTCATCACCATCATCATC-T--ACCA-AGGATGATATAAACA 783 ||||||| ||| ||| ||||||| ||||||||||| | ||| || |||||| ||||| Sbjct 665 AGCCCAC-CAAAATCACAGTCATCGCCATCATCATCATCTACCGGAG-ATGATAAAAACA 722 Query 784 CATTTATTGAATCAGACCCTCCCGTTGAAGCAGATATGTGGGACGTTGCTGAACAGATGG 843 ||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| Sbjct 723 CATTTATTGAATCAGACCCTCCCATTGAAGCAGATATTTGGGACGTTGTTGAACAGATGG 782 Query 844 ATCCTAGTTTACCTGTCGAAGAGACTCTTCATAGCATGGATTTCTCGTATAAAATTCCTG 903 |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct 783 ATCCTAGTTTACCTGTTGACGAGACTCTTCATAGTATGGATTTCTCGTATAAAATTCCTG 842 Query 904 AGCAAGATGATTTGGATTCACATGTCTCTGTGTCTGCAGGGTTGAATGGAGAAGTACTCA 963 ||||||||||||||||||||| | |||| |||||| ||| |||||||||||||||||||| Sbjct 843 AGCAAGATGATTTGGATTCACGTATCTCCGTGTCTTCAGAGTTGAATGGAGAAGTACTCA 902 Query 964 TGAGGGAAAAGGTTAGGAGAGGGAAAATGCCGTACCAACCCAAAGATGTTTCACCCGTTG 1023 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 CGAGGGAAAAGGTTAGGAGAGGGAAAATGCCGTACCAACCCAAAGATGTTTCACCCGTTG 962 Query 1024 A-TACGTTCACAAGGCAATTTGGGAATGTTGGGTTGAAATATATATCCTCTAAAGCATCA 1082 | | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 963 AAT-CATTCACAAGGCAATTTGGGAATGTTGGGTTGAAATATATTTCCTCTAAAGCATCA 1021 Query 1083 CCGATCTGTTCTGAAAAGCATTACAGGATGTACATGATAAACTCTCTGCCCAAATTACAA 1142 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1022 CCGATATGTTCTGAAAAGCATTATAGGATGTACATGATAAACTCTCTGCCCAAATTACAA 1081 Query 1143 GTGTTGGACAATTTGGCCATCAGAAAGAGTGATAGAGATAAGGCCATTGAAACATATTCT 1202 ||||||||||||||||| || ||||||||||||||||| | |||| |||||||||||||| Sbjct 1082 GTGTTGGACAATTTGGCTATAAGAAAGAGTGATAGAGACAGGGCCTTTGAAACATATTCT 1141 Query 1203 GCAAACTTTGAGGACTTACCGTACAAGAGAAAGAAGGAAAGTGTAGTTAGAGTCCTTGAG 1262 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1142 GCAAACTTTGAGGACTTACCATACAAGAGAAAGAAGGAAAGTGTAGTTAGAGTCCTTGAG 1201 Query 1263 AACCGTGAAAAAAGATCAAGCAAGGGGAAATCTCAGAATTCCTATAAAAGATCGCTTTGT 1322 || || |||| |||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 1202 AAGCGGGAAACAAGATCAAGCAAAGGGATATCTCAGAATTCCTATAAAAGATCGCTTTGT 1261 Query 1323 GCAGCTAAAATGGGATCGCCTGCTTCGCCTCTCTTGCATTCACTTCCTTTTTTGAGTAGT 1382 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 GCAGCTAAAATGGGATCGTCTGCTTCGCCTCTCTTGCATTCACTTCCTTTTTTGAGTAGT 1321 Query 1383 AGGATTCAGCAGGAAGATGATAATAGTAGATTATGTCCAAGGCAGTTTGAGTATCATCCA 1442 |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 1322 AGGATTCATCAGGAAGATGATAATAGTAGATTAAGTCCAAGGCAGTTTGAGTACCATCCA 1381 Query 1443 CTAGATCCTAGCCTAATGGTATTTGGGACTTTGGATGGCGAGGTGGTTGTTCTCAATCAC 1502 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1382 CTAGATCCTAGCCTTATGGTATTTGGGACTTTGGATGGCGAGGTAGTTGTTCTCAATCAC 1441 Query 1503 GAAAGTGGGAAAATTTTCCGTTACATCCCATCTAATGGATCTCAAAGTACCATCTTGGGA 1562 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1442 GAAAGTGGGAAAATTGTCCGTTACATCCCATCTCATGGATCTCAAAGTACCATCTTGGGA 1501 Query 1563 CTTTGTTGGCTCAAGATATATCCATCTATGGTTATAGCTGGCTCAGCCAATGGCTCATTG 1622 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 1502 CTTTGCTGGCTCAAGATGTATCCATCTATGGTTATAGCTGGCTCAGCCAATGGCTCTTTG 1561 Query 1623 AAGCTGTACGACATCCAAAAAGCGTCATCCACGGTTACTACTAGCAGTCATTCCACTTCT 1682 ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| Sbjct 1562 AAGCTGTACGACATCCAAAAAGCGTCATCAACGGTTGCTACTAGCAGTCATGCCACTTCT 1621 Query 1683 ---GGTTCTGTCACTTTTGATGAGTTTGACCAATTAACGTCGGTTCATGCTAATTCGACG 1739 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1622 TCTGGTTCTGTCACTTTTGATGAGTTTGACCAATTAACTTCGGTTCATGCTAATTCGACG 1681 Query 1740 GACCAACTATTTCTTGCTAGCGGATACTCGAAGGATGTTGCTTTGTATGACATTGGTAGG 1799 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1682 GACCAACTATTTCTTGCTAGCGGATACTCGAGGGATGTTGCTTTGTATGACATTGGTAGG 1741 Query 1800 GGAACACGCCTACAGGTTTTTGCTAATATGCATCAAGAGCATATTAACGTGGTGAAATTT 1859 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1742 GGAACACGCCTACAGGTTTTTGCTAATATGCATCAAGAGCATATTAACGTGGTGAAATTT 1801 Query 1860 TCGAACCATTCCCCGTTTCTTTTTGCGACTTCTTCTTTCGATAAAGATGTTAAGCTTTGG 1919 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 1802 TCGAACCATTCCCCGTTCCTTTTTGCGACTTCTTCTTTCGATAAAGATGTTAAGCTATGG 1861 Query 1920 GATTTGAGACAAGAGCCATCCCGACCATGCTACACCGCTTCTAGTACGAAAGGAAATGTA 1979 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1862 GATTTGAGACAAGAGCCATCCCGACCATGCTACACCGCTTCTAGTACCAAAGGAAATGTG 1921 Query 1980 ATGGTTTGCTTTTCTCCAGATGATCGTTATCTTCTAGCATCAGCCGTAGACAACGAGGTG 2039 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1922 ATGGTTTGCTTTTCTCCAGATGATCGTTATCTTCTAGCATCAGCCGTGGACAATGAGGTG 1981 Query 2040 AGGCAGCTTTTGACAGTAGATGGAAGGCTTCATCTGAACTTTGAGATAGTCCCAAGAGTA 2099 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1982 AGGCAGCTTTTGACAGTTGATGGAAGGCTTCATCTGAACTTTGAGATAGTCCCAAGAGTA 2041 Query 2100 AGCTCGATGAACTATACTCGATCATACTACATGAATGGTAATGACTACATCATAAGTGGA 2159 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 2042 AGCTCAATGAACTATACCCGATCATACTACATGAATGGTAATGACTACATCATCAGTGGA 2101 Query 2160 AGCTGCGATGAGAATGTGATCCGTGTTTGTTGTGCTCAAACTGGAAGACGACTTAGGGAT 2219 ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 2102 AGCTGCGATGAAAATGTGATCCGTGTTTGTTGTGCTCAAACTGGAAGGCGCCTTAGGGAT 2161 Query 2220 GTAACTCTAGAGGGAAACGGCTCGGACTTTTCCATGATGTATGTTCAGTCTCTACGCGGT 2279 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2162 GTAACTCTAGAGGGAAACGGCTCGGACTTTTCCATGATGTTTGTTCAGTCTCTACGCGGT 2221 Query 2280 GACCCCTTCAGGGATTTCAATATGAGTGTATTGGCTGCGTACGCACGGTCAAGCTCACTT 2339 ||||||||||||||||| || |||||||| || ||||| ||| |||||||||||||| | Sbjct 2222 GACCCCTTCAGGGATTTTAACATGAGTGTTTTAGCTGCTTACACACGGTCAAGCTCAGTG 2281 Query 2340 TCTGAAATAGTCAAGGTGAATTTGTTAGCGTCAAGAGATTCTACAGCAGAAGAATCTCAT 2399 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 2282 TCTGAAATAGTCAAGGTGAATTTGTTAGCGTCAAGAGATTCTACAGAAGAACAATCTCAT 2341 Query 2400 GGTCTCCGTTCCTACCCTTCAAGTAGCATGGGAGGCTGATGAT-AAAACCAAAAGAGAG 2457 ||||| ||||| ||||| |||| |||||||||||||||||||| ||||||||| ||||| Sbjct 2342 GGTCTACGTTCTTACCCCTCAAATAGCATGGGAGGCTGATGATTAAAACCAAATGAGAG 2400 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97244395485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5