BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34290.1
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491238 jgi|Araly1|491238|fgenesh2_kg.7__671__AT4G34290.1 953 0.0
> Ahg491238 jgi|Araly1|491238|fgenesh2_kg.7__671__AT4G34290.1
Length=653
Score = 953 bits (516), Expect = 0.0
Identities = 584/616 (95%), Gaps = 7/616 (1%)
Strand=Plus/Plus
Query 45 CAC-AACAATGGCTCTTTCTTCTGGAATCTTCTCTACTACTTTTCTCTGCGTCGATACGG 103
||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 19 CACTAACAATGGCTCTTTCTTCTGGAATCTTCTCTACGACCTTTCTCTGCGTCGATACGG 78
Query 104 CGCCGTTGCGCAGCTCAATGTTGTCTCCATCTTCGCTCCGTTTGTCCCCTAATCATCCGA 163
||||||| || |||||| |||||||||| |||||||||||||| |||||| ||||||||
Sbjct 79 CGCCGTTCCGTAGCTCACTGTTGTCTCCCTCTTCGCTCCGTTTTTCCCCTCATCATCCGG 138
Query 164 CTAACCTGCGCATGGTTCGAGCTGTAACTTCCGCGGCGGCGGCTTCCTCCGACCCGACAA 223
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 139 CTAACCTGCGCATGGTTCGAGCTGTAACATCCGCGACGGCGGCTTCCTCCGACCCGACAA 198
Query 224 CCACGACCAAGACTC-GGGAGCCACGTGGCATCATGAAGCCTCGTCCAGTGTCCCAGGCG 282
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 199 CCACGACCAAGAC-CAGGGAGCCACGTGGCATCATGAAGCCTCGTCCAGTGTCCCCGGAG 257
Query 283 ATGCAGGATGTCGTTGGCGTTCCTGAAATCCCTCGTACTCAAGCTCTCAAACGCATTTGG 342
||||||||||| || |||||||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct 258 ATGCAGGATGTTGTCGGCGTTCCCGAAATCCCTCGCACTCAGGCTCTTAAACGCATTTGG 317
Query 343 GCTTACATCAAGGAACATGACCTTCAAGACCCACAAAACAAGAGGGATATACTCTGCGAC 402
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GCTTACATCAAGGAACACGACCTTCAAGACCCACAAAACAAGAGGGATATACTCTGCGAC 377
Query 403 GAGAAGCTGAAGAAGATATTTGAAGGCAAAGAACGTGTTGGGTTCTTGGAGATTGCAAAA 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GAGAAGCTGAAGAAGATATTTGAAGGCAAAGAACGTGTTGGGTTCTTGGAGATTGCAAAG 437
Query 463 CTCATTGGTCCTCACTTTCTCTGAATGAATTTTGGCTGAGAGAAGACAATCATTGGCCTA 522
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 438 CTCATTGGTCCTCACTTTCTCTGAAGGAATTTTGGCTGAGAGAAGACAATCATTGGCCTA 497
Query 523 TGTTTTGCTGAGCTACTAAAGGCCATGAAAGATCAGATTACATATTAGT-AAATTTAGGG 581
||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 498 TGTTTTGCTGAGCTATTAAAGGC-ATGAAAGATCAGATTACATATTAGTTAAATT-AGGG 555
Query 582 TTTAAGAAGTTTTTATGCAACCAAGTAGTTTATAAGCCTTTGGAGGATATCTTATGTCGG 641
||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 556 TTTAAGAAGTTTT-ATGCAACCAAGTAGTTTATAAGCCTCTGGAGGATATCTTTTGTCGG 614
Query 642 TTATGTGCTCATTTGC 657
||||||||||||||||
Sbjct 615 TTATGTGCTCATTTGC 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27600991908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5