BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34300.1 Length=942 Score E Sequences producing significant alignments: (Bits) Value Ahg491237 jgi|Araly1|491237|fgenesh2_kg.7__670__AT4G33930.1 1249 0.0 Ahg491284 jgi|Araly1|491284|fgenesh2_kg.7__717__AT4G33930.1 800 0.0 > Ahg491237 jgi|Araly1|491237|fgenesh2_kg.7__670__AT4G33930.1 Length=951 Score = 1249 bits (676), Expect = 0.0 Identities = 874/964 (91%), Gaps = 35/964 (4%) Strand=Plus/Plus Query 1 ATGGGTCTCTCAGCGG-CACGCAAGCTACTTGTATTCCTCATGGTTACTGTGTTCCTCTT 59 ||||||||||| || |||| ||| |||| ||| ||||||||||| ||| |||| |||| Sbjct 1 ATGGGTCTCTC-TTGGACACGTAAGTTACTCGTAGTCCTCATGGTTTCTGCGTTCGTCTT 59 Query 60 CTCTGGGAGTGCTGACGCGTGGAGCTGGAGTTGGGGTTCCGGCCAGTCTGGTTCAAACGG 119 ||| ||||||||||| ||||||||||||||||||||||| | |||||| ||||| ||||| Sbjct 60 CTCCGGGAGTGCTGATGCGTGGAGCTGGAGTTGGGGTTCTGACCAGTCCGGTTCGAACGG 119 Query 120 GGATTGGGGATGGA------G---CTCTGGCGGTTCTTTTGGCTCGGGTTCTGGTGGTTC 170 || ||||||||||| | |||||||||||||| |||||||||||| |||||||| Sbjct 120 GGGTTGGGGATGGAGCTCCGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTTC 179 Query 171 AGACTCCAACTCGGGTGGTTCAAGCTGGGGTTGGGGATGGAGCTCGGACGGAACAGATAC 230 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 180 AGACTCCAACTCGGATGGTTCAGGCTGGGGTTGGGGATGGAGCTCGGACGGAACAGATAC 239 Query 231 AAACTGGGGTTGGGGAAGCAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACA 290 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 240 AAACTGGGGTTGGGGAAGCAGCTCTGGCTCAAACCATTCAAGTGGCACTGGTTCTACACA 299 Query 291 CAACGGTCACAGCTCTGGCTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCA 350 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 300 CAACGGTCACAGCTCTGGCTCGAACCATTCAAGAGGCACTGGCTCTACACACAACGGTCA 359 Query 351 CAGCTCTGGCTCGAACCACTCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTGG 410 |||||||||||| ||||| |||||| ||||||||||||||| || | || ||||||| Sbjct 360 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACAC---AC-A--AC-GCTCTGG 412 Query 411 CTCAAACCACTCAAGCATAGTTGGTTCTACACACAAGAATCACGGCTCTGGCTCAAACCA 470 |||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| Sbjct 413 CTCAAACCACTCAAGCATCGTTGGTCCTACACACAAGAATCACAGCTCTGGCTCAAACCA 472 Query 471 CTCAAGCATTGCTGGTCCTACCCACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCAT 530 ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 473 CTCAAGCATCATTGGTCCTACCCACAACGGTCACAACTCTGGCTCAAACCACTCAAGCAT 532 Query 531 CATTGGTTCTACACACAA---TCACA---C-GGCTC-CATCGCTGGGAAG-A--A-AGAT 578 | |||||||||||||||| ||||| | ||||| | | || ||| | | ||| Sbjct 533 CGTTGGTTCTACACACAACGGTCACAGCTCGGGCTCAAACCACT--CAAGCATCATTGAT 590 Query 579 TGCGGTTACTGTATGGAAAAACGGATACGGTTACACAGAATGGACTGCAAAGCATGCCCC 638 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 TGCGGTTACTGTATGGGAAAACGGATACGGTTACACAGAATGGACTGCAAAGCATGCCCC 650 Query 639 ATTCTACGTCAACGATGTTCTTGTTTTCACGTACAACAACAATGACCAAACACAATCCAA 698 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 651 ATTCTACGTCAACGATGTTCTTGTTTTCACGTACAACAACAATGACCAAACCCAATCCAA 710 Query 699 GACGAAGCACCACCATGACAAGAAGAAGAACGACGTCTACTTGCTCCCAGACATGAAGAG 758 ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 GACAAAGCACCAC-A--ACAAGAAGAAGAACGACGTCTACTTGCTCCCAGACATGAAGAG 767 Query 759 CTTCAAGAGATGCAATGTGGCCAGAGGCAAGAAGCTGGTTGCACGAGGAGGTTCATCATC 818 ||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 768 CTTCAGGAGATGCGATGTGGCCAGAGGCAAGAAGCTGGTGGCACGAGGTGGTTCATCATC 827 Query 819 AAGAGGCTTCAAGTTGCTTCTCCGTAAGGTTCATACTTATTACTTCGTCAGTGGAGACCA 878 |||||||||||| |||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 828 AAGAGGCTTCAAATTGCTTCTCCGTAAGGTTCAGACTTACTACTTCGCCAGTGGAGACCA 887 Query 879 CAACGACTGCAACCACAACATGAAGTTCTCTGTCCACCCGATTCCCCACCCTTCTTCGCA 938 ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 888 CAACGGCTGCAACCACAACATGAAGTTCTCTGTCCACCCCATTCCCCACCCTTCTTCACA 947 Query 939 CTAA 942 |||| Sbjct 948 CTAA 951 Score = 346 bits (187), Expect = 2e-94 Identities = 258/290 (89%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 249 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACACAACGGTCACAGCTCTGG 308 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 309 CAGCTCTGGCTCGAACCATTCAAGAGGCACTGGCTCTACACACAACGGTCACAGCTCTGG 368 Query 309 CTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGGCTCGAACCA 368 ||| |||||||||||||||||||| ||||||||| | || |||||||||| ||||| Sbjct 369 CTCAAACCATTCAAGCGGCACTGGCTCTACACAC-A-----AC-GCTCTGGCTCAAACCA 421 Query 369 CTCAAGCAGCACTGGCT-CTACACATAACAATCACAGCTCTGGCTCAAACCACTCAAGCA 427 |||||||| | ||| | ||||||| || ||||||||||||||||||||||||||||||| Sbjct 422 CTCAAGCATCGTTGG-TCCTACACACAAGAATCACAGCTCTGGCTCAAACCACTCAAGCA 480 Query 428 T-AGTTGGTTCTACACACAA-GAATCACGGCTCTGGCTCAAACCACTCAAGCATTGCTGG 485 | | ||||| |||| ||||| | |||| |||||||||||||||||||||||| | ||| Sbjct 481 TCA-TTGGTCCTACCCACAACG-GTCACAACTCTGGCTCAAACCACTCAAGCATCGTTGG 538 Query 486 TCCTACCCACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCATCATTG 535 | |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTCTACACACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCATCATTG 588 Score = 281 bits (152), Expect = 5e-75 Identities = 221/252 (88%), Gaps = 13/252 (5%) Strand=Plus/Plus Query 300 CAGCTCTGGCTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGG 359 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 258 CAGCTCTGGCTCAAACCATTCAAGTGGCACTGGTTCTACACACAACGGTCACAGCTCTGG 317 Query 360 CTCGAACCACTCAAGCAG-CACTGGCTCTACACATAACAATCACAGCTCTGGCTCAAACC 418 ||||||||| ||||| || ||||||||||||||| ||| |||||||||||||||||||| Sbjct 318 CTCGAACCATTCAAG-AGGCACTGGCTCTACACACAACGGTCACAGCTCTGGCTCAAACC 376 Query 419 ACTCAAGCAT-AGTTGGTTCTACACACAAGAATCACGGCTCTGGCTCAAACCACTCAAGC 477 | |||||| | | || ||||||||||| | | |||||||||||||||||||||| Sbjct 377 ATTCAAGCGGCACT-GGCTCTACACACAA----C--G-CTCTGGCTCAAACCACTCAAGC 428 Query 478 ATTGCTGGTCCTACCCACAACGG-TCACAGCTCGGGCTCAAACCACTCAAGCATCATTGG 536 || | ||||||||| ||||| | ||||||||| |||||||||||||||||||||||||| Sbjct 429 ATCGTTGGTCCTACACACAA-GAATCACAGCTCTGGCTCAAACCACTCAAGCATCATTGG 487 Query 537 TTCTACACACAA 548 | |||| ||||| Sbjct 488 TCCTACCCACAA 499 Score = 237 bits (128), Expect = 1e-61 Identities = 201/234 (86%), Gaps = 13/234 (6%) Strand=Plus/Plus Query 249 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACACAACGGTCACAGCTCTGG 308 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 360 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACACAACG--C-----TCTGG 412 Query 309 CTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGG-TCACAGCTCTGGCTCGAACC 367 ||| ||||| |||||| | |||| |||||||||| | ||||||||||||||| |||| Sbjct 413 CTCAAACCACTCAAGCATCGTTGGTCCTACACACAA-GAATCACAGCTCTGGCTCAAACC 471 Query 368 ACTCAAGCAGCACTGGCTC-TACACATAACAATCACAGCTCTGGCTCAAACCACTCAAGC 426 ||||||||| || ||| || ||| || ||| ||||| |||||||||||||||||||||| Sbjct 472 ACTCAAGCATCATTGG-TCCTACCCACAACGGTCACAACTCTGGCTCAAACCACTCAAGC 530 Query 427 ATAGTTGGTTCTACACACAA-GAATCACGGCTCTGGCTCAAACCACTCAAGCAT 479 || ||||||||||||||||| | |||| |||| |||||||||||||||||||| Sbjct 531 ATCGTTGGTTCTACACACAACGG-TCACAGCTCGGGCTCAAACCACTCAAGCAT 583 > Ahg491284 jgi|Araly1|491284|fgenesh2_kg.7__717__AT4G33930.1 Length=981 Score = 800 bits (433), Expect = 0.0 Identities = 616/699 (88%), Gaps = 33/699 (5%) Strand=Plus/Plus Query 250 AGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACACAACGGTCACAGCTCTGGC 309 ||||||||| | |||||||||||||||||||||||| ||||| | || |||||||| Sbjct 310 AGCTCTGGCACGAACCATTCAAGCGGCACTGGCTCTTCACAC-A-----AC-GCTCTGGC 362 Query 310 TCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGGCTCGAACCAC 369 || ||||| |||||||||||||| ||| |||||||| |||| ||||| ||||| |||||| Sbjct 363 TCTAACCACTCAAGCGGCACTGGCTCTTCACACAACAGTCATAGCTCGGGCTCAAACCAC 422 Query 370 TCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTGGCTCAAACCACTCAAGCATA 429 || | |||| | | | | |||||||||||||||||||||||||||| ||| Sbjct 423 TC--G-AGCA-T--C-GT-----T--GAATCACAGCTCTGGCTCAAACCACTCAAACATC 468 Query 430 GTTGGTTCTACACACAA-GAATCACGGCTCTGGCTCAAACCACTCAAGCATTGCTGGTCC 488 |||||||||||| |||| | |||| ||||||||| ||||||||| ||||| |||| | Sbjct 469 GTTGGTTCTACATACAACG-GTCACAGCTCTGGCTTAAACCACTCGAGCATCATTGGTTC 527 Query 489 TACCCACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCATCATTGGTTCTACACACAA 548 ||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 528 TACACACAACAATCACAGCTCTGGCTCAAACCACTCAAGCATCGTTGGTTCTACACACAA 587 Query 549 TCACACGGCTCC-AT--C-GCTGGGAAGAAAGATTGCGGTTACTGTATGGAAAAACGGAT 604 |||||| ||| || | ||| ||||||||||||||||||||||||||||||||||||| Sbjct 588 CCACACGAATCCAATACCGGCT-GGAAGAAAGATTGCGGTTACTGTATGGAAAAACGGAT 646 Query 605 ACGGTTACACAGAATGGACTGCAAAGCATGCCCCATTCTACGTCAACGATGTTCTTGTTT 664 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 647 ACGGTTACACAGAATGGAGTTCAAAGCATGCCCCATTCTACGTCAACGATGTTCTTGTTT 706 Query 665 TCACGTACAACAACAATGACCAAACACAATCCAAGACGAAGCACCACCATGACAAGAAGA 724 ||||||||||||| |||| | ||||||||||| |||||||||||| | | |||||||| Sbjct 707 TCACGTACAACAATGATGATCGAACACAATCCATGACGAAGCACCA-TA-G-CAAGAAGA 763 Query 725 AGAACGACGTCTACTTGCTCCCAGACATGAAGAGCTTCAAGAGATGCAATGTGGCCAGAG 784 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 764 AGAACGACGTCTACTTGCTCCCAGACATGAAGAGCTTCAAGAGATGCGATGTGGCCAGAG 823 Query 785 GCAAGAAGCTGGTTGCACGAGGAGGTTCATCATCAAGAGGCTTCAAGTTGCTTCTCCGTA 844 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 824 GCAAGAAGCTGGTGGCACGAGGAGGTTCATCATCAAGAGGCTTCAAATTGCTTCTCCGTA 883 Query 845 AGGTTCATACTTATTACTTCGTCAGTGGAGACCACA-ACGACTGCAACCACAACATGAAG 903 ||||||| ||||| |||||||||||||||||||| | | | ||||||||||||||||||| Sbjct 884 AGGTTCAGACTTACTACTTCGTCAGTGGAGACCATATAGG-CTGCAACCACAACATGAAG 942 Query 904 TTCTCTGTCCACCCGATTCCCCACCCTTCTTCGCACTAA 942 |||||| ||||||||||||||||||||||||| || ||| Sbjct 943 TTCTCTATCCACCCGATTCCCCACCCTTCTTCACATTAA 981 Score = 564 bits (305), Expect = 5e-160 Identities = 480/559 (86%), Gaps = 34/559 (6%) Strand=Plus/Plus Query 1 ATGGGTCTCTCA--GCGGCACGCAAGCTACTTGTATTCCTCATGGTTACTGTGTTCCTCT 58 |||||||||| | | |||||| ||| |||| ||| ||||| ||||||||| |||| ||| Sbjct 1 ATGGGTCTCT-ATTG-GGCACGTAAGTTACTCGTAGTCCTCCTGGTTACTGCGTTCGTCT 58 Query 59 TCTCTGGGAGTGCTGACGCGTGGAGCTGGAGTTGGGGTTCCGGCCAGTCTGGTTCAAACG 118 |||| ||||||||||| ||||||||||||||||||||||| | ||| |||||||| |||| Sbjct 59 TCTCCGGGAGTGCTGAAGCGTGGAGCTGGAGTTGGGGTTCTGACCAATCTGGTTCGAACG 118 Query 119 GGGATTGGGGATGGA------G---CTCTGGCGGTTCTTTTGGCTCGGGTTCTGGTGGTT 169 ||| ||||||||||| | |||||||||||||| |||||||||||| ||||||| Sbjct 119 GGGGTTGGGGATGGAGCTCCGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTT 178 Query 170 CAGACTCCAACTCGGGTGGTTCAAGCTGGGGTTGGGGATGGAGCTCGGACGGAACAGATA 229 ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 179 CAGACTCCAACTCGGATGGTTCAAGTTGGGGTTGGGGATGGAGCTCCGACGGAACAGATA 238 Query 230 CAAACTGGGGTTGGGGAAGCAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACAC 289 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 239 CAAACTGGGGTTGGGGAAGGAGCTCTGGCTCACACCATTCAAGCGGCACTGGCTCTACAC 298 Query 290 ACAACGGTCACAGCTCTGGCTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTC 349 ||||| |||| ||||||||| |||||||||||||||||||||| ||| ||||||||| | Sbjct 299 ACAACCGTCATAGCTCTGGCACGAACCATTCAAGCGGCACTGGCTCTTCACACAACG--C 356 Query 350 ACAGCTCTGGCTCGAACCACTCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTG 409 |||||||| |||||||||||| ||||||||||| |||| |||| ||| ||||| | Sbjct 357 -----TCTGGCTCTAACCACTCAAGCGGCACTGGCTCTTCACACAACAGTCATAGCTCGG 411 Query 410 GCTCAAACCACTCAAGCATAGTTGGTTCTACACACAAGAATCACGGCTCTGGCTCAAACC 469 ||||||||||||| ||||| |||| | | || || | |||||||||||||| Sbjct 412 GCTCAAACCACTCGAGCATCGTTG-----A-AT-CA-----CA-G-CTCTGGCTCAAACC 457 Query 470 ACTCAAGCATTGCTGGTCCTACCCACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCA 529 |||||| ||| | |||| |||| |||||||||||||||| |||| ||||||||| |||| Sbjct 458 ACTCAAACATCGTTGGTTCTACATACAACGGTCACAGCTCTGGCTTAAACCACTCGAGCA 517 Query 530 TCATTGGTTCTACACACAA 548 ||||||||||||||||||| Sbjct 518 TCATTGGTTCTACACACAA 536 Score = 189 bits (102), Expect = 3e-47 Identities = 134/150 (89%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 297 TCACAGCTCTGGCTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTC 356 ||||||||||||||| ||||| |||| | | |||||||||| |||||||||||||||| Sbjct 438 TCACAGCTCTGGCTCAAACCACTCAAACATCGTTGGTTCTACATACAACGGTCACAGCTC 497 Query 357 TGGCTCGAACCACTCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTGGCTCAAA 416 ||||| |||||||| |||| || ||| |||||||| ||||||||||||||||||||||| Sbjct 498 TGGCTTAAACCACTCGAGCATCATTGGTTCTACACACAACAATCACAGCTCTGGCTCAAA 557 Query 417 CCACTCAAGCATAGTTGGTTCTACACACAA 446 |||||||||||| ||||||||||||||||| Sbjct 558 CCACTCAAGCATCGTTGGTTCTACACACAA 587 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34958714889 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5