BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34300.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491237 jgi|Araly1|491237|fgenesh2_kg.7__670__AT4G33930.1 1249 0.0
Ahg491284 jgi|Araly1|491284|fgenesh2_kg.7__717__AT4G33930.1 800 0.0
> Ahg491237 jgi|Araly1|491237|fgenesh2_kg.7__670__AT4G33930.1
Length=951
Score = 1249 bits (676), Expect = 0.0
Identities = 874/964 (91%), Gaps = 35/964 (4%)
Strand=Plus/Plus
Query 1 ATGGGTCTCTCAGCGG-CACGCAAGCTACTTGTATTCCTCATGGTTACTGTGTTCCTCTT 59
||||||||||| || |||| ||| |||| ||| ||||||||||| ||| |||| ||||
Sbjct 1 ATGGGTCTCTC-TTGGACACGTAAGTTACTCGTAGTCCTCATGGTTTCTGCGTTCGTCTT 59
Query 60 CTCTGGGAGTGCTGACGCGTGGAGCTGGAGTTGGGGTTCCGGCCAGTCTGGTTCAAACGG 119
||| ||||||||||| ||||||||||||||||||||||| | |||||| ||||| |||||
Sbjct 60 CTCCGGGAGTGCTGATGCGTGGAGCTGGAGTTGGGGTTCTGACCAGTCCGGTTCGAACGG 119
Query 120 GGATTGGGGATGGA------G---CTCTGGCGGTTCTTTTGGCTCGGGTTCTGGTGGTTC 170
|| ||||||||||| | |||||||||||||| |||||||||||| ||||||||
Sbjct 120 GGGTTGGGGATGGAGCTCCGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTTC 179
Query 171 AGACTCCAACTCGGGTGGTTCAAGCTGGGGTTGGGGATGGAGCTCGGACGGAACAGATAC 230
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 AGACTCCAACTCGGATGGTTCAGGCTGGGGTTGGGGATGGAGCTCGGACGGAACAGATAC 239
Query 231 AAACTGGGGTTGGGGAAGCAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACA 290
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 240 AAACTGGGGTTGGGGAAGCAGCTCTGGCTCAAACCATTCAAGTGGCACTGGTTCTACACA 299
Query 291 CAACGGTCACAGCTCTGGCTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCA 350
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 300 CAACGGTCACAGCTCTGGCTCGAACCATTCAAGAGGCACTGGCTCTACACACAACGGTCA 359
Query 351 CAGCTCTGGCTCGAACCACTCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTGG 410
|||||||||||| ||||| |||||| ||||||||||||||| || | || |||||||
Sbjct 360 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACAC---AC-A--AC-GCTCTGG 412
Query 411 CTCAAACCACTCAAGCATAGTTGGTTCTACACACAAGAATCACGGCTCTGGCTCAAACCA 470
|||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||
Sbjct 413 CTCAAACCACTCAAGCATCGTTGGTCCTACACACAAGAATCACAGCTCTGGCTCAAACCA 472
Query 471 CTCAAGCATTGCTGGTCCTACCCACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCAT 530
||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 473 CTCAAGCATCATTGGTCCTACCCACAACGGTCACAACTCTGGCTCAAACCACTCAAGCAT 532
Query 531 CATTGGTTCTACACACAA---TCACA---C-GGCTC-CATCGCTGGGAAG-A--A-AGAT 578
| |||||||||||||||| ||||| | ||||| | | || ||| | | |||
Sbjct 533 CGTTGGTTCTACACACAACGGTCACAGCTCGGGCTCAAACCACT--CAAGCATCATTGAT 590
Query 579 TGCGGTTACTGTATGGAAAAACGGATACGGTTACACAGAATGGACTGCAAAGCATGCCCC 638
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGCGGTTACTGTATGGGAAAACGGATACGGTTACACAGAATGGACTGCAAAGCATGCCCC 650
Query 639 ATTCTACGTCAACGATGTTCTTGTTTTCACGTACAACAACAATGACCAAACACAATCCAA 698
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 651 ATTCTACGTCAACGATGTTCTTGTTTTCACGTACAACAACAATGACCAAACCCAATCCAA 710
Query 699 GACGAAGCACCACCATGACAAGAAGAAGAACGACGTCTACTTGCTCCCAGACATGAAGAG 758
||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GACAAAGCACCAC-A--ACAAGAAGAAGAACGACGTCTACTTGCTCCCAGACATGAAGAG 767
Query 759 CTTCAAGAGATGCAATGTGGCCAGAGGCAAGAAGCTGGTTGCACGAGGAGGTTCATCATC 818
||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 768 CTTCAGGAGATGCGATGTGGCCAGAGGCAAGAAGCTGGTGGCACGAGGTGGTTCATCATC 827
Query 819 AAGAGGCTTCAAGTTGCTTCTCCGTAAGGTTCATACTTATTACTTCGTCAGTGGAGACCA 878
|||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 828 AAGAGGCTTCAAATTGCTTCTCCGTAAGGTTCAGACTTACTACTTCGCCAGTGGAGACCA 887
Query 879 CAACGACTGCAACCACAACATGAAGTTCTCTGTCCACCCGATTCCCCACCCTTCTTCGCA 938
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 888 CAACGGCTGCAACCACAACATGAAGTTCTCTGTCCACCCCATTCCCCACCCTTCTTCACA 947
Query 939 CTAA 942
||||
Sbjct 948 CTAA 951
Score = 346 bits (187), Expect = 2e-94
Identities = 258/290 (89%), Gaps = 13/290 (4%)
Strand=Plus/Plus
Query 249 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACACAACGGTCACAGCTCTGG 308
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 309 CAGCTCTGGCTCGAACCATTCAAGAGGCACTGGCTCTACACACAACGGTCACAGCTCTGG 368
Query 309 CTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGGCTCGAACCA 368
||| |||||||||||||||||||| ||||||||| | || |||||||||| |||||
Sbjct 369 CTCAAACCATTCAAGCGGCACTGGCTCTACACAC-A-----AC-GCTCTGGCTCAAACCA 421
Query 369 CTCAAGCAGCACTGGCT-CTACACATAACAATCACAGCTCTGGCTCAAACCACTCAAGCA 427
|||||||| | ||| | ||||||| || |||||||||||||||||||||||||||||||
Sbjct 422 CTCAAGCATCGTTGG-TCCTACACACAAGAATCACAGCTCTGGCTCAAACCACTCAAGCA 480
Query 428 T-AGTTGGTTCTACACACAA-GAATCACGGCTCTGGCTCAAACCACTCAAGCATTGCTGG 485
| | ||||| |||| ||||| | |||| |||||||||||||||||||||||| | |||
Sbjct 481 TCA-TTGGTCCTACCCACAACG-GTCACAACTCTGGCTCAAACCACTCAAGCATCGTTGG 538
Query 486 TCCTACCCACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCATCATTG 535
| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCTACACACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCATCATTG 588
Score = 281 bits (152), Expect = 5e-75
Identities = 221/252 (88%), Gaps = 13/252 (5%)
Strand=Plus/Plus
Query 300 CAGCTCTGGCTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGG 359
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 258 CAGCTCTGGCTCAAACCATTCAAGTGGCACTGGTTCTACACACAACGGTCACAGCTCTGG 317
Query 360 CTCGAACCACTCAAGCAG-CACTGGCTCTACACATAACAATCACAGCTCTGGCTCAAACC 418
||||||||| ||||| || ||||||||||||||| ||| ||||||||||||||||||||
Sbjct 318 CTCGAACCATTCAAG-AGGCACTGGCTCTACACACAACGGTCACAGCTCTGGCTCAAACC 376
Query 419 ACTCAAGCAT-AGTTGGTTCTACACACAAGAATCACGGCTCTGGCTCAAACCACTCAAGC 477
| |||||| | | || ||||||||||| | | ||||||||||||||||||||||
Sbjct 377 ATTCAAGCGGCACT-GGCTCTACACACAA----C--G-CTCTGGCTCAAACCACTCAAGC 428
Query 478 ATTGCTGGTCCTACCCACAACGG-TCACAGCTCGGGCTCAAACCACTCAAGCATCATTGG 536
|| | ||||||||| ||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 429 ATCGTTGGTCCTACACACAA-GAATCACAGCTCTGGCTCAAACCACTCAAGCATCATTGG 487
Query 537 TTCTACACACAA 548
| |||| |||||
Sbjct 488 TCCTACCCACAA 499
Score = 237 bits (128), Expect = 1e-61
Identities = 201/234 (86%), Gaps = 13/234 (6%)
Strand=Plus/Plus
Query 249 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACACAACGGTCACAGCTCTGG 308
||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 360 CAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACACAACG--C-----TCTGG 412
Query 309 CTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGG-TCACAGCTCTGGCTCGAACC 367
||| ||||| |||||| | |||| |||||||||| | ||||||||||||||| ||||
Sbjct 413 CTCAAACCACTCAAGCATCGTTGGTCCTACACACAA-GAATCACAGCTCTGGCTCAAACC 471
Query 368 ACTCAAGCAGCACTGGCTC-TACACATAACAATCACAGCTCTGGCTCAAACCACTCAAGC 426
||||||||| || ||| || ||| || ||| ||||| ||||||||||||||||||||||
Sbjct 472 ACTCAAGCATCATTGG-TCCTACCCACAACGGTCACAACTCTGGCTCAAACCACTCAAGC 530
Query 427 ATAGTTGGTTCTACACACAA-GAATCACGGCTCTGGCTCAAACCACTCAAGCAT 479
|| ||||||||||||||||| | |||| |||| ||||||||||||||||||||
Sbjct 531 ATCGTTGGTTCTACACACAACGG-TCACAGCTCGGGCTCAAACCACTCAAGCAT 583
> Ahg491284 jgi|Araly1|491284|fgenesh2_kg.7__717__AT4G33930.1
Length=981
Score = 800 bits (433), Expect = 0.0
Identities = 616/699 (88%), Gaps = 33/699 (5%)
Strand=Plus/Plus
Query 250 AGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACACACAACGGTCACAGCTCTGGC 309
||||||||| | |||||||||||||||||||||||| ||||| | || ||||||||
Sbjct 310 AGCTCTGGCACGAACCATTCAAGCGGCACTGGCTCTTCACAC-A-----AC-GCTCTGGC 362
Query 310 TCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTCTGGCTCGAACCAC 369
|| ||||| |||||||||||||| ||| |||||||| |||| ||||| ||||| ||||||
Sbjct 363 TCTAACCACTCAAGCGGCACTGGCTCTTCACACAACAGTCATAGCTCGGGCTCAAACCAC 422
Query 370 TCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTGGCTCAAACCACTCAAGCATA 429
|| | |||| | | | | |||||||||||||||||||||||||||| |||
Sbjct 423 TC--G-AGCA-T--C-GT-----T--GAATCACAGCTCTGGCTCAAACCACTCAAACATC 468
Query 430 GTTGGTTCTACACACAA-GAATCACGGCTCTGGCTCAAACCACTCAAGCATTGCTGGTCC 488
|||||||||||| |||| | |||| ||||||||| ||||||||| ||||| |||| |
Sbjct 469 GTTGGTTCTACATACAACG-GTCACAGCTCTGGCTTAAACCACTCGAGCATCATTGGTTC 527
Query 489 TACCCACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCATCATTGGTTCTACACACAA 548
||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 528 TACACACAACAATCACAGCTCTGGCTCAAACCACTCAAGCATCGTTGGTTCTACACACAA 587
Query 549 TCACACGGCTCC-AT--C-GCTGGGAAGAAAGATTGCGGTTACTGTATGGAAAAACGGAT 604
|||||| ||| || | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 588 CCACACGAATCCAATACCGGCT-GGAAGAAAGATTGCGGTTACTGTATGGAAAAACGGAT 646
Query 605 ACGGTTACACAGAATGGACTGCAAAGCATGCCCCATTCTACGTCAACGATGTTCTTGTTT 664
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 647 ACGGTTACACAGAATGGAGTTCAAAGCATGCCCCATTCTACGTCAACGATGTTCTTGTTT 706
Query 665 TCACGTACAACAACAATGACCAAACACAATCCAAGACGAAGCACCACCATGACAAGAAGA 724
||||||||||||| |||| | ||||||||||| |||||||||||| | | ||||||||
Sbjct 707 TCACGTACAACAATGATGATCGAACACAATCCATGACGAAGCACCA-TA-G-CAAGAAGA 763
Query 725 AGAACGACGTCTACTTGCTCCCAGACATGAAGAGCTTCAAGAGATGCAATGTGGCCAGAG 784
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 764 AGAACGACGTCTACTTGCTCCCAGACATGAAGAGCTTCAAGAGATGCGATGTGGCCAGAG 823
Query 785 GCAAGAAGCTGGTTGCACGAGGAGGTTCATCATCAAGAGGCTTCAAGTTGCTTCTCCGTA 844
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 824 GCAAGAAGCTGGTGGCACGAGGAGGTTCATCATCAAGAGGCTTCAAATTGCTTCTCCGTA 883
Query 845 AGGTTCATACTTATTACTTCGTCAGTGGAGACCACA-ACGACTGCAACCACAACATGAAG 903
||||||| ||||| |||||||||||||||||||| | | | |||||||||||||||||||
Sbjct 884 AGGTTCAGACTTACTACTTCGTCAGTGGAGACCATATAGG-CTGCAACCACAACATGAAG 942
Query 904 TTCTCTGTCCACCCGATTCCCCACCCTTCTTCGCACTAA 942
|||||| ||||||||||||||||||||||||| || |||
Sbjct 943 TTCTCTATCCACCCGATTCCCCACCCTTCTTCACATTAA 981
Score = 564 bits (305), Expect = 5e-160
Identities = 480/559 (86%), Gaps = 34/559 (6%)
Strand=Plus/Plus
Query 1 ATGGGTCTCTCA--GCGGCACGCAAGCTACTTGTATTCCTCATGGTTACTGTGTTCCTCT 58
|||||||||| | | |||||| ||| |||| ||| ||||| ||||||||| |||| |||
Sbjct 1 ATGGGTCTCT-ATTG-GGCACGTAAGTTACTCGTAGTCCTCCTGGTTACTGCGTTCGTCT 58
Query 59 TCTCTGGGAGTGCTGACGCGTGGAGCTGGAGTTGGGGTTCCGGCCAGTCTGGTTCAAACG 118
|||| ||||||||||| ||||||||||||||||||||||| | ||| |||||||| ||||
Sbjct 59 TCTCCGGGAGTGCTGAAGCGTGGAGCTGGAGTTGGGGTTCTGACCAATCTGGTTCGAACG 118
Query 119 GGGATTGGGGATGGA------G---CTCTGGCGGTTCTTTTGGCTCGGGTTCTGGTGGTT 169
||| ||||||||||| | |||||||||||||| |||||||||||| |||||||
Sbjct 119 GGGGTTGGGGATGGAGCTCCGGCAACTCTGGCGGTTCTTCTGGCTCGGGTTCAGGTGGTT 178
Query 170 CAGACTCCAACTCGGGTGGTTCAAGCTGGGGTTGGGGATGGAGCTCGGACGGAACAGATA 229
||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 179 CAGACTCCAACTCGGATGGTTCAAGTTGGGGTTGGGGATGGAGCTCCGACGGAACAGATA 238
Query 230 CAAACTGGGGTTGGGGAAGCAGCTCTGGCTCAAACCATTCAAGCGGCACTGGCTCTACAC 289
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 239 CAAACTGGGGTTGGGGAAGGAGCTCTGGCTCACACCATTCAAGCGGCACTGGCTCTACAC 298
Query 290 ACAACGGTCACAGCTCTGGCTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTC 349
||||| |||| ||||||||| |||||||||||||||||||||| ||| ||||||||| |
Sbjct 299 ACAACCGTCATAGCTCTGGCACGAACCATTCAAGCGGCACTGGCTCTTCACACAACG--C 356
Query 350 ACAGCTCTGGCTCGAACCACTCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTG 409
|||||||| |||||||||||| ||||||||||| |||| |||| ||| ||||| |
Sbjct 357 -----TCTGGCTCTAACCACTCAAGCGGCACTGGCTCTTCACACAACAGTCATAGCTCGG 411
Query 410 GCTCAAACCACTCAAGCATAGTTGGTTCTACACACAAGAATCACGGCTCTGGCTCAAACC 469
||||||||||||| ||||| |||| | | || || | ||||||||||||||
Sbjct 412 GCTCAAACCACTCGAGCATCGTTG-----A-AT-CA-----CA-G-CTCTGGCTCAAACC 457
Query 470 ACTCAAGCATTGCTGGTCCTACCCACAACGGTCACAGCTCGGGCTCAAACCACTCAAGCA 529
|||||| ||| | |||| |||| |||||||||||||||| |||| ||||||||| ||||
Sbjct 458 ACTCAAACATCGTTGGTTCTACATACAACGGTCACAGCTCTGGCTTAAACCACTCGAGCA 517
Query 530 TCATTGGTTCTACACACAA 548
|||||||||||||||||||
Sbjct 518 TCATTGGTTCTACACACAA 536
Score = 189 bits (102), Expect = 3e-47
Identities = 134/150 (89%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 297 TCACAGCTCTGGCTCGAACCATTCAAGCGGCACTGGTTCTACACACAACGGTCACAGCTC 356
||||||||||||||| ||||| |||| | | |||||||||| ||||||||||||||||
Sbjct 438 TCACAGCTCTGGCTCAAACCACTCAAACATCGTTGGTTCTACATACAACGGTCACAGCTC 497
Query 357 TGGCTCGAACCACTCAAGCAGCACTGGCTCTACACATAACAATCACAGCTCTGGCTCAAA 416
||||| |||||||| |||| || ||| |||||||| |||||||||||||||||||||||
Sbjct 498 TGGCTTAAACCACTCGAGCATCATTGGTTCTACACACAACAATCACAGCTCTGGCTCAAA 557
Query 417 CCACTCAAGCATAGTTGGTTCTACACACAA 446
|||||||||||| |||||||||||||||||
Sbjct 558 CCACTCAAGCATCGTTGGTTCTACACACAA 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5