BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34320.1
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491233 jgi|Araly1|491233|fgenesh2_kg.7__666__AT4G34320.1 2248 0.0
Ahg353391 jgi|Araly1|353391|fgenesh1_pg.C_scaffold_7000564 339 5e-92
> Ahg491233 jgi|Araly1|491233|fgenesh2_kg.7__666__AT4G34320.1
Length=1391
Score = 2248 bits (1217), Expect = 0.0
Identities = 1336/1393 (96%), Gaps = 9/1393 (1%)
Strand=Plus/Plus
Query 20 tgttgttgttgttgtCTCTCTCCTGATAAGCTCGACCAAGTTTATCTCTTTCTCGCTAAT 79
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTAGTTTTTGTTGTCTCTCTCCTGATAAGCTCGACCAAGTTTATCTCTTTCTCGCTAAT 60
Query 80 CATTTCTCTTTAAACTTCTCTCATCGTTGAACCATTTTGTTTT-AGTA-CATAAAGATTC 137
|||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||
Sbjct 61 CATTTCTCTTTAAACTTCTCTCATAGTTGAACCATTTTGTTTTAATTAGTATAAAGATTC 120
Query 138 TTCTTCATTC-TT-T-TTGTACGCGTTTCTATGTTACAAACGCATTTCTATCATAAAAGT 194
|||||||||| || | |||||| | ||||||||| | ||||||| |||||||||||||||
Sbjct 121 TTCTTCATTCATTCTCTTGTACACATTTCTATGTGAAAAACGCAGTTCTATCATAAAAGT 180
Query 195 TATTATTACTTGAGCTCAATCTTCATTGGTTTATTCATATATTCAGATCAATCGAGTTCG 254
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 181 TATTATTACTTGAGCTCAATCTTCATTGGTTTATTCATATCTTCAGATCAATCGAATTCG 240
Query 255 GTACTG-CGACGTTCTAATGGGAAACCAAACAAGCAAAAAGTCACAAGAGACATCGGCTA 313
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTAC-GACGACGTTCTAATGGGAAACCAAACAAGCAAAAAGTCACAAGAGACATCGGCTA 299
Query 314 AGAGCGTGCACTACACAACGGAGCTGAGATCCTACGCGGCTGCGTGCAAAGCAGACACGG 373
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct 300 AGAGCGTGCACTACACAACGGAGCTGAGATCGTACGAGGCCGCGTGCAAAGCAGACACGG 359
Query 374 AGCTTCAATCTTTCGACACGTGTTTGCAAGCACGGACGAGTCACGTGATAAGCACGCTAG 433
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 AGCTTCAGTCTTTCGACACGTGTTTGCAAGCACGGACAAGTCACGTGATAAGCACGCTAG 419
Query 434 CTACGGGGGTTGAGGTTCGAGCGCTCTCGTTCGATTCCTTGAAAGAAGTGACGCAATGCT 493
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 CTACGGGCGTTGAGGTTCGAGCGCTCTCGTTCGATTCCTTGAAAGAAGTGACGCAATGTT 479
Query 494 TGTTGGAGATGAACCAAGAAGTGGTGAAAGTGATATTGGATTGCAAGAAAGACATTTGGA 553
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 480 TGTTGGAGATGAACCAAGAAGTGGTGAAAGTGATATTGGATTGCAAGAAGGATATTTGGA 539
Query 554 AGAATCAAGAAATGTTTGAGCTTGTCGAAGATTACTTTGAGAATAGCTTGAAGACACTTG 613
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 AGAATCAAGAAATGTTTGAGCTCGTCGAAGATTACTTTGAGAATAGCTTGAAGACACTTG 599
Query 614 ATTTTTGTGCTGCTTTGGAGAAAGGCTTGAGACGAGCTCGTGATAGTCATCTTTTGATTC 673
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATTTCTGTGCTGCTTTGGAGAAAGGCTTGAGACGAGCTCGTGATAGTCATCTTTTGATTC 659
Query 674 TTGTTGCTCTTCAACAGTTTGAAGATGAGAGCCTTGTCCAAGGTGGGAACGGATACAAGA 733
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 660 TTGTTGCTCTTCAGCAGTTTGAAGATGAGAGCCTTGTTCAAGGTGGGAATGGATACAAGA 719
Query 734 AGACACTTGAAGAGCTAAAGAATTTCAAAGACGCAGAGAGTCC-TTTCAACGAAGACTTC 792
||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 720 AGACACTTGAAGAGCTAAAGAATTTCAAAGACGCAGAGAGTCCATTT-AATGAAGACTTC 778
Query 793 TTCAAAATGTTCCAATCTGTTTACAAACAGCAGATGCTGATGCTCGAGAAGCTTCAGCAT 852
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 779 TTCAAAATGTTCCAATCTGTTTACAAACAGCAGATGCTGATGCTTGAGAAGCTTCAGCTT 838
Query 853 CGTAAAAACAAGCTTGACAAGAAGCTTAAATGCATCCACACATGGAGAAAACTCTCCAGC 912
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 CGTAAGAACAAGCTTGACAAGAAGCTTAAATGCATCCACACATGGAGGAAACTCTCCAGC 898
Query 913 ATCATCTTTGTGGCTACCTTTGCCACTGTGCTCATCTGCTCTGTTGTGGCTGCAGCCATG 972
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 899 ATCATCTTTGTGGCTACCTTTGCCACTGTGCTCATCTGCTCTGTTGTGGCTGCTGCCATG 958
Query 973 GCAGCTCCTCCTGTGGCTGCGGCTCTCGCTGCAGCTACAGCCGTGCCGCTAGGCTCAATG 1032
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 959 GCAGCTCCTCCTGTGGCTGCGGCTCTTGCTGCAGCTACAGCCGTGCCGCTAGGCTCAATG 1018
Query 1033 GGGAAATGGATTGACTCGCTGTGGAAGAATTATGAGAATGCACTCAAAGGGCAAAAAGAG 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGGAAATGGATTGACTCGCTGTGGAAGAATTATGAGAATGCACTCAAAGGGCAAAAAGAG 1078
Query 1093 GTGATCAGTTCGATGCAGGCAGGAACATTTGTGGCGGTTAAAGATTTGGATAATATCCGA 1152
||||||||||||||||| || ||||||| ||| || |||||||||||||||||||||||
Sbjct 1079 GTGATCAGTTCGATGCAAGCGGGAACATATGTCGCTGTTAAAGATTTGGATAATATCCGT 1138
Query 1153 GTTTTGATCGAACGGTTGGAGATTGAGATCACGGGGATGGTGAAGAGTGCGGAGTTCGCT 1212
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1139 GTTTTGATCGAACGGTTGGAGATAGAGATCACGGGGATGGTGAAGAGTGCGGAGTTCGCG 1198
Query 1213 GTGGAACATAACGCGGTCAAGATTGGGATCGATGATATAAAGAAGAAGCTTGAGGTGTTT 1272
||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1199 GTGGAGCATAACGCAGTCAAGATTGGGATTGATGATATAAAGAAGAAACTTGAGGTGTTT 1258
Query 1273 AAGAAGAATGTTGAAGAACTGGGGACTCAAGCAGATTTGTGTAGCAGAGATATAAGAAGG 1332
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAGAAGAATGTTGAAGAATTGGGGACTCAAGCAGATTTGTGTAGCAGAGATATAAGAAGG 1318
Query 1333 GCAAGGACTGTGATTCTTCAGAGGATCATCAAGCACCCTAATAATGCTAGTAGTAGCACT 1392
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1319 GCAAGGACTGTGATTCTTCAGAGGATCATCAAGCATCCTAATAATGCTAGTAGCAGCACT 1378
Query 1393 TGAATAATGAAAT 1405
|||||||||||||
Sbjct 1379 TGAATAATGAAAT 1391
> Ahg353391 jgi|Araly1|353391|fgenesh1_pg.C_scaffold_7000564
Length=984
Score = 339 bits (183), Expect = 5e-92
Identities = 263/302 (87%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 645 ACGAGCTCGTGATAGTCATCTTTTGATTCTTGTTGCTCTTCAACAGTTTGAAGATGAGAG 704
||||| ||||| |||||| |||| |||||||| |||||| || ||||||||||| |||||
Sbjct 300 ACGAGTTCGTGCTAGTCACCTTTCGATTCTTGGTGCTCTCCACCAGTTTGAAGAAGAGAG 359
Query 705 CCTTGTCCAAGGTGGGAACGGATACAAGAAGACACTTGAAGAGCTAAAGAATTTCAAAGA 764
||| | ||| ||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 360 TCTTATTCAATATGGAAACGGATACAAGAAGACACTTGAAGAGCTGAAGAGGTTCAAAGA 419
Query 765 CGCAGAGAGTCCTTTCAACGAAGACTTC-TTCAAAATGTTCCAATCTGTTTACAAACAGC 823
| ||||||| |||||| || |||||||| || || |||||||||||||||||||| ||||
Sbjct 420 CACAGAGAGACCTTTCGACCAAGACTTCATT-AAGATGTTCCAATCTGTTTACAAGCAGC 478
Query 824 AGATGCTGATGCTCGAGAAGCTTCAGCATCGTAA-AAACAAGCTTGACAAGAAGCTTAAA 882
||||||||||||||||||||||||||| | |||| ||| ||||| ||||||||||| ||
Sbjct 479 AGATGCTGATGCTCGAGAAGCTTCAGCTTTGTAAGAAAAAAGCTCGACAAGAAGCTCAAG 538
Query 883 TGCATCCACACATGGAGAAAACTCTCCAGCATCATCTTTGTGGCTACCTTTGCCACTGTG 942
|||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||| ||
Sbjct 539 CGCATCCACACATGGCGAAAAGTCTCCAGCATCATCTTCATGGCTACGTTTGCCACTATG 598
Query 943 CT 944
||
Sbjct 599 CT 600
Score = 303 bits (164), Expect = 2e-81
Identities = 256/299 (86%), Gaps = 12/299 (4%)
Strand=Plus/Plus
Query 271 ATGGGAAACCAAACAAGCAAAAAGTCACAA-GAGACATCGGCTAAGAGCGTGCACTACAC 329
||||||||| ||||||||| ||||||| || |||||||||||| | | | |||||||
Sbjct 1 ATGGGAAACAAAACAAGCAGAAAGTCA-AAGGAGACATCGGCT---A--G-GAACTACAC 53
Query 330 AACGGAGCTGAGATCCTACGCGGCTGCGTGCAAAGCAGACACGGAGCTTCAATCTTTCGA 389
|||||| |||||||| |||| |||||| || |||| ||||| |||| |||| ||||||||
Sbjct 54 AACGGAACTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGA 113
Query 390 CACGTGTTTGCAAGCACGGACGAGTCACGTGATAAGCACGCTAGCTACGGGGGTTGAGGT 449
| | || |||| |||||||||||||||||||||||||||||| | || || ||||||||
Sbjct 114 TAAGCGTATGCAGGCACGGACGAGTCACGTGATAAGCACGCTACCCACAGGCGTTGAGGT 173
Query 450 TCGAGCGCTCTCGTTCGATTCCTTGAAAGAAGTGACGCA-ATGCTTGTTGGAGATGAACC 508
||| ||||||||||| ||||||||||||| ||||||| | | | || |||| |||||||
Sbjct 174 TCGGGCGCTCTCGTTTGATTCCTTGAAAGTAGTGACGGAGA-GTTTACTGGACATGAACC 232
Query 509 AAGAAGTGGTGAAAGTGATATTGGATTGCAAGAAAGACATTTGGAAGAATCAAGAAATG 567
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 233 AAGAAGTTATGAAAGTGATATTGGATTGCAAGAAAGACAT--GGAAGAATCAAGAAATG 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56868735785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5