BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34330.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353391 jgi|Araly1|353391|fgenesh1_pg.C_scaffold_7000564 414 5e-115
> Ahg353391 jgi|Araly1|353391|fgenesh1_pg.C_scaffold_7000564
Length=984
Score = 414 bits (224), Expect = 5e-115
Identities = 271/293 (92%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAACAAAACAAGCAGAAAGTCAAAGGAGAAATCGGGTAGGAACTACACAACGGAA 60
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 ATGGGAAACAAAACAAGCAGAAAGTCAAAGGAGACATCGGCTAGGAACTACACAACGGAA 60
Query 61 CTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGACACA-CG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 61 CTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGATA-AGCG 119
Query 120 TATGCAGGCACGGACGAGTCACGTGATAAGCACGCTAGCTACAGGCGTCGAGGTTCGATC 179
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |
Sbjct 120 TATGCAGGCACGGACGAGTCACGTGATAAGCACGCTACCCACAGGCGTTGAGGTTCGGGC 179
Query 180 GCTCTCGTTTGATTCCCTGAAAGCAGTGATTGG-GAGTTTACTGGACATGAACCAAGAAG 238
|||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||
Sbjct 180 GCTCTCGTTTGATTCCTTGAAAGTAGTGAC-GGAGAGTTTACTGGACATGAACCAAGAAG 238
Query 239 TGGCCAAAGTGATCTTGGATTGCAAGAAAGACATTTGGAAGAATCAAGAAATG 291
| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 239 TTATGAAAGTGATATTGGATTGCAAGAAAGACAT--GGAAGAATCAAGAAATG 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5