BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34330.1 Length=1065 Score E Sequences producing significant alignments: (Bits) Value Ahg353391 jgi|Araly1|353391|fgenesh1_pg.C_scaffold_7000564 414 5e-115 > Ahg353391 jgi|Araly1|353391|fgenesh1_pg.C_scaffold_7000564 Length=984 Score = 414 bits (224), Expect = 5e-115 Identities = 271/293 (92%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 1 ATGGGAAACAAAACAAGCAGAAAGTCAAAGGAGAAATCGGGTAGGAACTACACAACGGAA 60 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1 ATGGGAAACAAAACAAGCAGAAAGTCAAAGGAGACATCGGCTAGGAACTACACAACGGAA 60 Query 61 CTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGACACA-CG 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 61 CTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGATA-AGCG 119 Query 120 TATGCAGGCACGGACGAGTCACGTGATAAGCACGCTAGCTACAGGCGTCGAGGTTCGATC 179 ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| | Sbjct 120 TATGCAGGCACGGACGAGTCACGTGATAAGCACGCTACCCACAGGCGTTGAGGTTCGGGC 179 Query 180 GCTCTCGTTTGATTCCCTGAAAGCAGTGATTGG-GAGTTTACTGGACATGAACCAAGAAG 238 |||||||||||||||| |||||| ||||| || |||||||||||||||||||||||||| Sbjct 180 GCTCTCGTTTGATTCCTTGAAAGTAGTGAC-GGAGAGTTTACTGGACATGAACCAAGAAG 238 Query 239 TGGCCAAAGTGATCTTGGATTGCAAGAAAGACATTTGGAAGAATCAAGAAATG 291 | |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 239 TTATGAAAGTGATATTGGATTGCAAGAAAGACAT--GGAAGAATCAAGAAATG 289 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39647833680 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5