BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34340.1
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491232 jgi|Araly1|491232|fgenesh2_kg.7__665__AT4G34340.1 1980 0.0
> Ahg491232 jgi|Araly1|491232|fgenesh2_kg.7__665__AT4G34340.1
Length=1342
Score = 1980 bits (1072), Expect = 0.0
Identities = 1261/1350 (93%), Gaps = 22/1350 (2%)
Strand=Plus/Plus
Query 32 TTTCCCGGTGCTTCGTCGACGTTAGGTCTTTTCCGTTGACGGAGGCAAATTTCTTCGATT 91
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 TTTCCCGGTGCTTCGTCGTCGTTAGGTCTTTTCCGTTGACGGAGGCAAATTTCTTCGCTT 61
Query 92 CTCTTTAAACCGGCGGTCCATGTGGTCTTACCGACGAGAAAACCCTAATTTCAGGGATTA 151
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTCTTTGTACCGGCGGTAAATGTGGTCTTACCGACGAGAAAACCCTAATTTCAGGGATTA 121
Query 152 GATAGCTTTTTGAAACAAATTAGAGCAATGAACACAGAGAGAGCTCAAGAAGGTGATAGG 211
||||| |||||| |||| ||| |||| |||| |||||||||||||||||| |||||||||
Sbjct 122 GATAGATTTTTGTAACATATTCGAGCGATGAGCACAGAGAGAGCTCAAGATGGTGATAGG 181
Query 212 AACGATGCCGCATCTTCCTCTG-GCTGCTCCGAGTCCTACGAGTTTAGCCACGCAGCCGC 270
||||| ||||| || ||||| | | || |||||||||||||||||||||||||| |||||
Sbjct 182 AACGAGGCCGCTTCGTCCTC-GAGATGTTCCGAGTCCTACGAGTTTAGCCACGCCGCCGC 240
Query 271 TAAAGCTGCAGTAGCTCAGGTCTGCGAGAGCGTTGGGTACGAGAATTTCAAGGATCCAGC 330
|||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 241 TAAAGCTGCAGTGGCTCAGGTCTGCGAGAGCGTCGGGTACGAGCATTTCAAGGATCCAGC 300
Query 331 TCTCGAATCTCTATCTGGATTCGCACTCCAGTACATTCTTCAGCTAGGTAAAACCGCTAC 390
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTCGAATCTCTAGCTGGATTCGCACTCCAGTACATTCTTCAGCTAGGTAAAACCGCTAC 360
Query 391 TTCCTTCGCTAATCTAACTGGTAGGAGTCAGTGTAACGTGTTCGATATCATTCTCGCTTT 450
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 361 TTCCTTCGCTAATCTAACTGGTAGGAGTCAGTGTAACGCGTTCGATATCATTCTGGCTTT 420
Query 451 GGATGATTTGACTGATAACAATGGCGAACAAGGAATTTCGTCTGAGAGTTGTTCATTAGG 510
||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||
Sbjct 421 GGATGATATGACTGA---CAATGGCGAAGAAGGAATTTCTTCTGAGAGTTGTTCATTAGG 477
Query 511 TCGTTCGATTAAACTTAGGGAGATTATCGATTTCGTTAATTCGAGTGAAGAAGTCCC-TT 569
|||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| ||
Sbjct 478 GCGTTCGGTTAAACTTAGGGAGATTATCGATTACGTTAATTCGAGTGAAGAAATCCCGTT 537
Query 570 TCTCGCAGCCATTGCCAAGTTTTCCTGTAGCTATAAGTGATAGGAGTAGGAAGATGATCC 629
| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 538 T-TCGCAGCCATTGCCGCGTTTTCCTGTAGCTATAAGTGATAAAAGTAGGAATTTGATCC 596
Query 630 CAAGCTTTGTTGAAATTGGTGAAACTCCACCTGGGAAACATATTCCTTTGTGGCTACCAG 689
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 597 CAAGCTTTGTTGAAATTGGTGAAACTCCACCAGGAAAACATATTCCTTTGTGGCTACCAG 656
Query 690 CTTTTCCTGATCCTCATACTTATAAGGAAACCCCTATGTGGATCGAAAGAGTATCAGATC 749
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 657 CTTTCCCTGATCCTCATACTTATAAGGAAACACCTATGTGGATCGAAAGGGTATCAGATC 716
Query 750 CAAGGGGAGATAAGATTGAACAAGCGAGGCAGAGACGAAAGGCTGAGAGAGCTTTGTTGA 809
| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 717 CGAGGGGGGATAAGATTGAACAAGCGAGGCAGAGGCGGAAGGCTGAGAGAGCTTTGTTGA 776
Query 810 GTTTGCAGAGGAAACTTGTTTGTAAAATCTCCTCAAGGAATCCTGTGTGGGGAGATATGG 869
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 777 GTTTGCAGAGGAAACTTGTTTGTAAACTCTCCTCAAGGAATCCTGTGTGGGGAGATTTGG 836
Query 870 ATGGTGTGAAAGAAGAAATGAGAGATGATGAGAGTGAACT-GCGTTCTGTATCGTC--CG 926
||||||||||||||||||||||||| || |||||||| || ||||||||||||| | ||
Sbjct 837 ATGGTGTGAAAGAAGAAATGAGAGAAGACGAGAGTGA-CTTGCGTTCTGTATCGCCTTCG 895
Query 927 ------G-GGAGAAAGTCGAATCATTGAATAGAGATGG-CTTATCAGTGATAGAGGCATT 978
| |||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 896 ATATCCGAGGAGAAAGTCGAATCATTGAATAGAGATGGTCT-ATCAGTGATAGAGGCATT 954
Query 979 TGCTCCTGCTATGGAGGCTGCAAGAGATGGGTTTTCTAGTGAAGCTCACACTGAATGGAA 1038
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TGCTCCTGCCATGGAGGCTGCAAGAGATGGGTTTTCTAGTGAAGCTCACACTGAATGGAA 1014
Query 1039 GAAGAATAAACCTGTTGCTCTTTCTAAGCTCAGAACCGAGAAGAAATTTCTCGGACAACC 1098
|||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1015 GAAGAAAAAACCTGTTGCTCTTTCTATGCTCAGAACTGAGAAGAAATTTCTCGGACAACC 1074
Query 1099 TTTGGATCTAAGTCTACAGATGAAGGGTGAAGATAGACCCATATCCTTTGTGCGTGAGGA 1158
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1075 GTTGGATCTAAGGCTACAGATGAAGGGTGAAGATAGACCCTTATCCTTTGTGCGTGAGGA 1134
Query 1159 GGATAGAGATGACAAAAGAAGAAGAGCGGAGTTCATTTTGAGACAGTGTATGGAGAACCC 1218
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGATAGAGATGACAAAAGAAGGAGAGCGGAGTTCATTTTGAGACAGTGTATGGAGAACCC 1194
Query 1219 AGTAGACCTCAATCAGTTGTAAAATAAGTGATTCATTACAGTCTGTGTAGCGTACTATTA 1278
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||
Sbjct 1195 AGTAGACCTCAATCAGTTGTAAAATAAGTGATTCATTACAGTTTGTGAAGCGTAGTTTTA 1254
Query 1279 ATCTTGTGATTTGTAACCTTTCTTTATACAGGCCTATGTTATGATTATGATTTTGTGACT 1338
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1255 AAATTGTGATTTGTAACTTTTCTTTA--CAGGCCTATGTTATGATTATGATTTTGTGACT 1312
Query 1339 GAAAGAATGAGAATTTCTAACCTATCTTTT 1368
||||||||||||||||||||||||||||||
Sbjct 1313 GAAAGAATGAGAATTTCTAACCTATCTTTT 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51351569199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5