BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34350.1
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491231 jgi|Araly1|491231|fgenesh2_kg.7__664__AT4G34350.1 2518 0.0
> Ahg491231 jgi|Araly1|491231|fgenesh2_kg.7__664__AT4G34350.1
Length=1633
Score = 2518 bits (1363), Expect = 0.0
Identities = 1559/1650 (94%), Gaps = 27/1650 (2%)
Strand=Plus/Plus
Query 39 CGTTTTGCTTGCTTGTGCGTTTCTCTCGAACTCTCTCCATGGCTGTTGCGCTCCAATTC- 97
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 CGTCTTGCTTGCTTGTGCGTTTCTCTCGAACTCTCTCCATGGCTGTTGCGCTCCAGTTCT 60
Query 98 AGCCGATTATGCGTTCGACCGGATACTTTCGTGCGGGAGAATCATCTCTCTGGATCCGGA 157
| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct 61 A-CCGATTATGCGTTCGGCCAGATACTTTCGTGCTGGAGAATCATCTCTCTGGATCCGGA 119
Query 158 TCTCTCCGCCGCCGGAAAGCTTTATCAGTCCGGTGCTCGTCTGGCGATGAGAACGCTCCT 217
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 120 TCTCTCCGGCGCCGGAAAGCTTTATCAGTCCGATGCTCGTCTGGAGATGAGAACGCTCCT 179
Query 218 TCGCCATCGGTGGTGATGGACTCCGATTTCGACGCCAAGGTGTTCCGTAAGAACTTGACG 277
||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 180 TCGCCATCGATGGTGATGGACTCCGATTTTGATGCGAAGGTGTTCCGTAAGAACTTGACG 239
Query 278 AGAAGCGATAATTACAATCGTAAAGGGTTCGGTCATAAGGAGGAGACACTCAAGCTCATG 337
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 AGAAGCGAGAATTACAATCGTAAAGGGTTCGGTCACAAGGAGGAGACACTCAAGCTCATG 299
Query 338 AATCGAGAGTACACCAGTGATATATTGGAGACACTGAAAACAAATGGGTATACTTATTCT 397
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 AATCGAGAGTACACCAGTGATATATTGGAGACACTGAAAACAAATGGGTATACGTATTCT 359
Query 398 TGGGGAGATGTTACTGTGAAACTCGCTAAAGCATATGGTTTTTGCTGGGGTGTTGAGCGT 457
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 TGGGGAGATGTTACTGTGAAACTCGCTAAAGCATATGGCTTTTGCTGGGGTGTTGAGCGT 419
Query 458 GCTGTTCAGATTGCATATGAAGCACGAAAGCAGTTTCCAGAGGAGAGGCTTTGGATTACT 517
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 GCTGTTCAGATTGCATATGAAGCAAGAAAGCAGTTTCCAGAGGAGAGGCTTTGGATTACT 479
Query 518 AACGAAATCATTCATAACCCGACCGTCAATAAGAGGTTGGAAGATATGGATGTTAAAATT 577
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AACGAAATTATTCATAACCCGACCGTCAATAAGAGGTTGGAAGATATGGATGTTAAAATT 539
Query 578 ATTCCGGTTGAGGATTCAAAGAAACAGTTTGATGTAGTAGAGAAAGATGATGTGGTTATC 637
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 540 ATTCCGGTTGAGGATTCAAAGAAGCAGTTTGATGTAGTAGAGAGAGATGATGTGGTTATC 599
Query 638 CTTCCTGCGTTTGGAGCTGGTGTTGACGAGATGTATGTTCTTAATGATAAAAAGGTGCAA 697
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 600 CTTCCTGCATTTGGAGCTGGGGTTGATGAGATGTATGTTCTTAATGATAAAAAGGTGCAA 659
Query 698 ATTGTTGACACGACTTGTCCTTGGGTGACAAAGGTCTGGAACACGGTTGAGAAGCACAAG 757
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATTGTCGACACGACTTGTCCTTGGGTGACAAAGGTCTGGAACACGGTTGAGAAGCACAAG 719
Query 758 AAGGGGGAATACACATCAGTAATCCATGGTAAATATAATCATGAAGAGACGATTGCAACT 817
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 720 AAGGGCGAATACACATCAGTAATTCATGGTAAATATAATCACGAAGAGACGATTGCAACT 779
Query 818 GCGTCTTTTGCAGGAAAGTACATCATTGTAAAGAACATGAAAGAGGCAAATTACGTTTGT 877
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 GCGTCTTTTGCAGGAAAGTACATCATTGTAAAGAACATGAAAGAGGCGAATTACGTTTGT 839
Query 878 GATTACATTCTCGGTGGCCAATACGATGGATCTAGCTCCACAAAAGAGGAGTTCATGGAG 937
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 840 GATTACATTCTCGGTGGCCAATATGATGGATCTAGCTCTACAAAAGAGGAGTTCATGGAG 899
Query 938 AAATTCAAATACGCAATTTCGAAGGGTTTCGATCCCGACAATGACCTTGTCAAAGTTGGT 997
||||||||||||||| ||||||| ||||| ||||| ||| ||||||||||||||||||||
Sbjct 900 AAATTCAAATACGCAGTTTCGAAAGGTTTTGATCCTGACCATGACCTTGTCAAAGTTGGT 959
Query 998 ATTGCAAACCAAACAACGATGCTAAAGGGAGAAACAGAGGAGATAGGAAGATTACTCGAG 1057
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 960 ATTGCAAACCAAACAACGATGCTTAAGGGAGAAACAGAGGAGATAGGAAAATTACTCGAG 1019
Query 1058 AC-AACAATGATGCGCAAGTATGGAGTGGAAAATGTAAGCGGACATTTCATCAGCTTCAA 1116
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 -CGAACAATGATGCGCAAGTATGGAGTGGAAAATGTAAGCGGACATTTCATCAGCTTCAA 1078
Query 1117 CACAATATGCGACGCTACTCAAGAGCGACAAGACGCAATCTATGAGCTAGTGGAAGAGAA 1176
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1079 CACGATATGCGACGCGACTCAAGAGCGACAAGACGCAATCTATGAACTAGTGGAAGAGAA 1138
Query 1177 GATTGACCTCATGCTAGTGGTTGGCGGATGGAATTCAAGTAACACCTCTCACCTTCAGGA 1236
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1139 GATTGACCTCATGCTAGTGGTCGGCGGGTGGAATTCAAGTAACACCTCTCACCTTCAGGA 1198
Query 1237 AATCTCAGAGGCACGGGGAATCCCATCTTACTGGATCGATAGTGAGAAACGGATAGGACC 1296
|||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1199 AATCGCAGAGGCACGGGGAATCCCATCATACTGGATTGACAGTGAGAAACGGATAGGACC 1258
Query 1297 TGGGAATAAAATAGCCTATAAGCTCCACTATGGAGAACTGGTCGAGAAGGAAAACTTTCT 1356
|||||| |||||||| | ||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 1259 TGGGAACAAAATAGCATCTAAGCTCCATTATGGAGAGCTGGTCGAGAAGGAAAATTTTCT 1318
Query 1357 CCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAGGTCGT 1416
||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1319 CCCGAAGGGACCGATAACCATCGGTGTGACATCAGGTGCATCAACCCCAGATAAGGTCGT 1378
Query 1417 GGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTATTGCAGCTGGCTTG 1476
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1379 GGAAGATGCTTTGGTGAAGGTGTTCGACATTAAACGTGAAGAGTTGTTGCAGCTGGCTTG 1438
Query 1477 ATTCGGCATTGTGATCGTATTCAAATACTATT-T--GTCAT---GTCAAGAGTGTACTAA 1530
||||||| ||||||||||||||||||| |||| | || || ||||||||||||||||
Sbjct 1439 ATTCGGCCTTGTGATCGTATTCAAATA-TATTGTTTGTTATTATGTCAAGAGTGTACTAA 1497
Query 1531 AATATA-TGTAGTTGTATGATTTGTCTTTATAACTTTTGTAAGAGGTTTTGTAATTCAAA 1589
|||||| | ||||||||||||| ||||||||||||||||||| || ||||
Sbjct 1498 AATATACT-TAGTTGTATGATT-GTCTTTATAACTTTTGTAA----TT--------CAAA 1543
Query 1590 GTCAACATCCTCGTT-ATCTTACTCCACTTAATGTTCTTACCATAATCGCAATTAGACTG 1648
||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1544 GTCAACATCCTTGTTCATCTTACTCCACTTAATGTTCTTACCATAATCGTAATTAGATTG 1603
Query 1649 ATATAGAACTTGAGACTGTGTAAGGCTGTC 1678
||| ||||||| ||||||||||||||||||
Sbjct 1604 ATACAGAACTTAAGACTGTGTAAGGCTGTC 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62925084740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5