BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34360.1 Length=1023 Score E Sequences producing significant alignments: (Bits) Value Ahg491230 jgi|Araly1|491230|fgenesh2_kg.7__663__AT4G34360.1 1456 0.0 > Ahg491230 jgi|Araly1|491230|fgenesh2_kg.7__663__AT4G34360.1 Length=899 Score = 1456 bits (788), Expect = 0.0 Identities = 866/903 (96%), Gaps = 7/903 (1%) Strand=Plus/Plus Query 12 AAAGGGGTTTAGGGTTTATTGGCTGAGCTGATAAGGAGGAGAATC-GAGCAAGTCCAGCT 70 |||||||||||||||||| || |||||||||| | ||||||||| | ||||| ||||| Sbjct 2 AAAGGGGTTTAGGGTTTA-TGCCTGAGCTGAT-A--AGGAGAATCAAACCAAGTACAGCT 57 Query 71 ATGGAGAATCCAAATTCCGTTGGTCCTCCTTCTGCTTTAACCTACCTCGATCCTCACTAC 130 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 58 ATGGAGAATCCAAATTCCGTTGGTCCTCCTTCTGCTCTGACCTACCTCGATCCTCACTAC 117 Query 131 TGGGACGAGAGATTCTCTTCTGAAGAACACTATGAATGGTTCAAGGATTACTCTCATTTC 190 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TGGGACGAGAGGTTTTCTTCTGAAGAACACTATGAATGGTTCAAGGATTACTCTCATTTC 177 Query 191 CAGCATCTCATCATATCCAACATCAAACCCTCTTCTTCCGTATTGGAATTGGGATGTGGG 250 ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 178 CAGCATCTCATCAAATCCAACATCAAAACCTCTTCTTCCGTCTTGGAATTGGGATGTGGG 237 Query 251 AACTCTCAGTTGTGTGAAGAGTTGTATAAGGATGGGATTGTTGATATTACCTGCATTGAT 310 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 238 AATTCTCAGTTGTGTGAAGAGTTGTATAAAGATGGGATTGTTGATATTACCTGCATTGAT 297 Query 311 TTATCTTCCGTGGCGGTAGAGAAGATGCAGAGTCGGCTGCTACCAAAAGGGTACAAAGAA 370 |||||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 298 TTATCTTCGGTTGCGGTAGAGAAGATGCAGAGTCGGTTGCTATCAAAAGGGTACAAAGAA 357 Query 371 ATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTG 430 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTC 417 Query 431 GTTATTGAGAAAGGGACCATGGATGTACTGTTTGTGGATGCTGGTGATCCTTGGAATCCC 490 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 418 GTTATTGAGAAAGGGACCATGGATGTACTATTTGTGGATGCTGGTGATCCTTGGAATCCC 477 Query 491 CGTCCAGAAACTGTTAGCAAAGTCATGGCAACCCTTGATGGAGTTCACCGGGTTTTGAAA 550 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 478 CGTCCAGAAACTGTTAGCAAAGTCGTGGCAACCCTTGATGGAGTTCACCGGGTTTTGAAA 537 Query 551 CCAGATGGCATTTTCATTTCCATTACTTTTGGCCAGCCGCATTTCAGGCGTCCTCTGTTT 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 538 CCAGATGGCATTTTCATTTCCATTACTTTTGGCCAGCCGCATTTCAGGCGTCCTTTGTTT 597 Query 611 AAGGATCCTAAGTTTACTTGGTCCATGGAGTACAACACTTTTGGCGATGGCTTCCATTAT 670 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 AATGATCCTAAGTTTACTTGGTCCATGGAGTACAACACTTTTGGCGATGGCTTCCATTAT 657 Query 671 TTCTTCTATATCTTAAGAAAGGGAAAGAGATGTAATGATGAGAAAGAAGATGAGAAATGT 730 ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| Sbjct 658 TTCTTCTATATCTTAAGAAAGGGAAAGAGATCTAATGAAGAGAACGAAGATGAGAAATGC 717 Query 731 AATGATCCATCAATATCCCTATATCAAGATGAACTTGAAGGCGAAGACTACCTCTTCCGA 790 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 AGTGATCCATCAATATCCCTATATCAAGATGAACTTGAAGGCGAAGACTACCTCTTCCGA 777 Query 791 ACACGCATTGATGATGGCGAGGATTAGGACAAGAACAACGTGAGATTAGTTGTTGTTGCT 850 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 ACACGCATTGATGATGACGAGGATTAGGACAAGAACAACGTGAGATTAGTTGTTGTTGCT 837 Query 851 CTGTAATGTTGATT-GCTAATTTTAGAATCATTCTTTGTGGATTTTGGACAAAAGTAAAG 909 ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| Sbjct 838 ATGTAATGTTGATTTG-TAATTTTAGAATCATTCTTTGTGGGTTTTGGACAAAAGTAAAG 896 Query 910 GAT 912 ||| Sbjct 897 GAT 899 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38046671166 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5