BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34360.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491230 jgi|Araly1|491230|fgenesh2_kg.7__663__AT4G34360.1 1456 0.0
> Ahg491230 jgi|Araly1|491230|fgenesh2_kg.7__663__AT4G34360.1
Length=899
Score = 1456 bits (788), Expect = 0.0
Identities = 866/903 (96%), Gaps = 7/903 (1%)
Strand=Plus/Plus
Query 12 AAAGGGGTTTAGGGTTTATTGGCTGAGCTGATAAGGAGGAGAATC-GAGCAAGTCCAGCT 70
|||||||||||||||||| || |||||||||| | ||||||||| | ||||| |||||
Sbjct 2 AAAGGGGTTTAGGGTTTA-TGCCTGAGCTGAT-A--AGGAGAATCAAACCAAGTACAGCT 57
Query 71 ATGGAGAATCCAAATTCCGTTGGTCCTCCTTCTGCTTTAACCTACCTCGATCCTCACTAC 130
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 58 ATGGAGAATCCAAATTCCGTTGGTCCTCCTTCTGCTCTGACCTACCTCGATCCTCACTAC 117
Query 131 TGGGACGAGAGATTCTCTTCTGAAGAACACTATGAATGGTTCAAGGATTACTCTCATTTC 190
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGGGACGAGAGGTTTTCTTCTGAAGAACACTATGAATGGTTCAAGGATTACTCTCATTTC 177
Query 191 CAGCATCTCATCATATCCAACATCAAACCCTCTTCTTCCGTATTGGAATTGGGATGTGGG 250
||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 178 CAGCATCTCATCAAATCCAACATCAAAACCTCTTCTTCCGTCTTGGAATTGGGATGTGGG 237
Query 251 AACTCTCAGTTGTGTGAAGAGTTGTATAAGGATGGGATTGTTGATATTACCTGCATTGAT 310
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 AATTCTCAGTTGTGTGAAGAGTTGTATAAAGATGGGATTGTTGATATTACCTGCATTGAT 297
Query 311 TTATCTTCCGTGGCGGTAGAGAAGATGCAGAGTCGGCTGCTACCAAAAGGGTACAAAGAA 370
|||||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 298 TTATCTTCGGTTGCGGTAGAGAAGATGCAGAGTCGGTTGCTATCAAAAGGGTACAAAGAA 357
Query 371 ATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTG 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTC 417
Query 431 GTTATTGAGAAAGGGACCATGGATGTACTGTTTGTGGATGCTGGTGATCCTTGGAATCCC 490
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 GTTATTGAGAAAGGGACCATGGATGTACTATTTGTGGATGCTGGTGATCCTTGGAATCCC 477
Query 491 CGTCCAGAAACTGTTAGCAAAGTCATGGCAACCCTTGATGGAGTTCACCGGGTTTTGAAA 550
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 CGTCCAGAAACTGTTAGCAAAGTCGTGGCAACCCTTGATGGAGTTCACCGGGTTTTGAAA 537
Query 551 CCAGATGGCATTTTCATTTCCATTACTTTTGGCCAGCCGCATTTCAGGCGTCCTCTGTTT 610
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 538 CCAGATGGCATTTTCATTTCCATTACTTTTGGCCAGCCGCATTTCAGGCGTCCTTTGTTT 597
Query 611 AAGGATCCTAAGTTTACTTGGTCCATGGAGTACAACACTTTTGGCGATGGCTTCCATTAT 670
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AATGATCCTAAGTTTACTTGGTCCATGGAGTACAACACTTTTGGCGATGGCTTCCATTAT 657
Query 671 TTCTTCTATATCTTAAGAAAGGGAAAGAGATGTAATGATGAGAAAGAAGATGAGAAATGT 730
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct 658 TTCTTCTATATCTTAAGAAAGGGAAAGAGATCTAATGAAGAGAACGAAGATGAGAAATGC 717
Query 731 AATGATCCATCAATATCCCTATATCAAGATGAACTTGAAGGCGAAGACTACCTCTTCCGA 790
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGTGATCCATCAATATCCCTATATCAAGATGAACTTGAAGGCGAAGACTACCTCTTCCGA 777
Query 791 ACACGCATTGATGATGGCGAGGATTAGGACAAGAACAACGTGAGATTAGTTGTTGTTGCT 850
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ACACGCATTGATGATGACGAGGATTAGGACAAGAACAACGTGAGATTAGTTGTTGTTGCT 837
Query 851 CTGTAATGTTGATT-GCTAATTTTAGAATCATTCTTTGTGGATTTTGGACAAAAGTAAAG 909
||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 ATGTAATGTTGATTTG-TAATTTTAGAATCATTCTTTGTGGGTTTTGGACAAAAGTAAAG 896
Query 910 GAT 912
|||
Sbjct 897 GAT 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5