BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34390.1
Length=3151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491227 jgi|Araly1|491227|fgenesh2_kg.7__660__AT4G34390.1 3943 0.0
> Ahg491227 jgi|Araly1|491227|fgenesh2_kg.7__660__AT4G34390.1
Length=3066
Score = 3943 bits (2135), Expect = 0.0
Identities = 2555/2750 (93%), Gaps = 60/2750 (2%)
Strand=Plus/Plus
Query 400 GATGGCTGCAGTTATAAGAAAGTTATTACCTTTCCCATCACCGAATCCTAAAAGGGATAA 459
||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 336 GATGGCTGCAGTTTTAAGAAAGTTTTTACCTTTACCATCACCGAATCCTAAAAGAGATAA 395
Query 460 TCGAGAAAGTGACGATGATGATGAAACAAGTAGTGGCTATCGAATCGAATATTCATTCGC 519
||| |||||||||||||||| || | || | || |||| ||||||||||||||
Sbjct 396 TCGGGAAAGTGACGATGATGGTG-ATGAA--A------ATAGAATTGAATATTCATTCGC 446
Query 520 C-AGTGAGTATAAAGGTCCTCTTATTGCTAATGTGCCACGAGCTCTTCCCGTTGAAGTTG 578
| | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 447 CTCG-GAGTATAAAGGCCCTCTTATTGCTAATGTGCCACGAGCTCTTCCCGTTGACGTTG 505
Query 579 ATCAGATTCCTACGGCTCTTCCCGTTTCCTTTTCTTCCTTG-CGGAGTGGTATCTCTTAC 637
||||||||||||| |||||||||||||| |||||||||||| | | ||| | |||||||
Sbjct 506 ATCAGATTCCTACTGCTCTTCCCGTTTCATTTTCTTCCTTGTC-GCGTGATGGCTCTTAC 564
Query 638 CCAGTGG---CACCTCTCGTTATGACTAAGGATACCAAGAGACCACCTGATTCTGGAATA 694
||||||| |||||||||||| || | | |||||||| | ||||||| |||||||||
Sbjct 565 CCAGTGGTTCCACCTCTCGTTAGGA--GA-GTTACCAAGAAATCACCTGAATCTGGAATA 621
Query 695 GAGAAGAAGAACGGTTTCGTTGACTCTGCAGCTGGTTCTAGTGTGGTTTTGATAGGGCGT 754
|||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 622 GAGAAGAAAAACGGTTTGGTTGACTCTGCAGCTGGTTCTAGTGTGGTTTTGAAAGGGCGT 681
Query 755 GATGTTGTTTCTGG--C-tcatcatcatcatcatcatcaAAGAGGTTGGATGTACCAGAA 811
|||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 682 GATGTTGTTTCTGGCTCATCATCATCATCATCATCATCAAAGAGGTTGGATGTATCAGAA 741
Query 812 GAAGTGAAAAGTCCTGCTGATTTTCGGTTATCACCATCATCACCATTGTCTGCATCAGCG 871
| |||||||| | | | |||||| | |||||||||||||||||||||||||||| ||| |
Sbjct 742 GCAGTGAAAAATTCGGTTGATTTACAGTTATCACCATCATCACCATTGTCTGCAGCAGTG 801
Query 872 AGAGAGGAGGATCAC-TTAGATGAT-GACAGAGTTTCGGATGTGGGACCTAGAGCAGTGA 929
|||||||||||| || ||||||||| || |||||||||||||||||| ||||||| ||||
Sbjct 802 AGAGAGGAGGAT-ACATTAGATGATGGA-AGAGTTTCGGATGTGGGAACTAGAGCTGTGA 859
Query 930 GATTCGTTGAACCTTTTCAGAGTAGTGAATGTGATGAGAGCTCCTATGTTTCTGATGGAG 989
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 860 GATTCGTTGAACCTTTTCAGAGTAGTGAATGTGATGAAAGCTCTTACACTTCTGATGGAG 919
Query 990 AAAGTATAGCTGCAACGCATAGAGCT-GAAAGGAAAGGTAAAAGAGGATCGTGTTACCGG 1048
||||||||||| |||||| || || | ||||||||||| ||||||||||||||||||||
Sbjct 920 AAAGTATAGCTCCAACGCCTAAAG-TGGAAAGGAAAGGGAAAAGAGGATCGTGTTACCGA 978
Query 1049 TGCCAGTTGGGGAACCGGTTTACTGAGAAGGAAGTCTGTATTGTCTGCGATGCCAAATAC 1108
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 979 TGCCTGCTGGGGAACCGGTTTACTGAGAAGGAAGTCTGTATTGTCTGCGATGCCAAGTAC 1038
Query 1109 TGTTTCAACTGTGTGCGCAGAGCCATGGGTGCGATGCCCGAAGGAAGAAAGTGTCAAGCT 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1039 TGTTTCAACTGTGTGCGCAGAGCCATGGGTGCGATGCCCGAAGGAAGAAAGTGTCAAACT 1098
Query 1169 TGCATTGGTTATAGGATTGATGAGTCCAAGAGAGCAAGTCTCGGAAAGTGTTCAAGAATG 1228
|||||||||| | |||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1099 TGCATTGGTTTTGGGATCGATGAGTCGAAGAGAGCAAGTCTTGGAAAGTGTTCAAGAATG 1158
Query 1229 CTCAAGCGCCATCTCACGGATTCTGAACTTCGACAAGTCATGAATGCCGAGATCACCTGC 1288
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 CTGAAGCGCCATCTCACAGATTCTGAACTTCGACAAGTCATGAATGCCGAGATCACCTGC 1218
Query 1289 AAGGCGAATCAATTGCCTTCACGACTTATCATTGTCAATG-ACAAGCCTTTAAGTGAAGA 1347
|||| |||||||||||| ||||| ||||||| |||||||| || ||||||||||||||||
Sbjct 1219 AAGGTGAATCAATTGCCCTCACGGCTTATCACTGTCAATGAAC-AGCCTTTAAGTGAAGA 1277
Query 1348 TGAGCTTTACACGTTGCAGACATGTCCAAATCCACCCAAGAAGCTAAAACCCGGACACTA 1407
|||||||| |||||||| |||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 1278 TGAGCTTTTCACGTTGCGGACATGTCCAAATCCACCCAAGAACCTAAAACCTGGAAACTA 1337
Query 1408 TTGGTATGATAAGGTTGCTGGCTACTGGGGAAAGATAGGAGAGAAACCTAGTCAGATTAT 1467
|||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1338 TTGGTATGATAAGGTTTCTGGCTACTGGGGAAAGATAGGCGAGAAACCTTGTCAGATTAT 1397
Query 1468 AAGTCCTAACAACAGCATAGGAGGAT-ACATCAGTGAGAAAGTAAGCAATGGAGACACTG 1526
|||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 1398 AAGTCCTAACAACAGCATAGGAGG-TAACATCAGTGAGAACGTAAGCAATGGAGACACTG 1456
Query 1527 AAATTTATATTAATGGCCGGGAAATAACCAAGCCAGAGCTCACGATGCTCAAGTGGGCGG 1586
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1457 AAATTTATATTAATGGCCGGGAAATAACCAAGCAAGAGCTCATGATGCTCAAGTGGGTGG 1516
Query 1587 GGGTGCAATGTGAAGGAAAACCTCATTTTTGGGTCGATTCAGATGGTTCTTACCGAGAAG 1646
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1517 GGGTGCAATGTGAAGGAAAACCTCATTTTTGGGTTGATTCAGATGGTACTTACCGAGAAG 1576
Query 1647 AAGGTCAAAAGCATCCCATCGGGAACATCTGGAGTAAGAAGAGAGCAAAAATTGCTTGCG 1706
||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |
Sbjct 1577 AAGGTCAAAAGCATCCCATCGGGAACATCTGGAATAAGAAGAGAACAAAAATCGCTTGTG 1636
Query 1707 CTGTGTTCTCTCTGCCAGTTCCTCCGGCTTCGTCTGCAGTAGAACCATATGATGTGCCCT 1766
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1637 TTGTGTTCTCTCTGCCAGTTCCTCCGGCTTCTTCTGCAGTAGAACCATGTGATGTGCCCT 1696
Query 1767 TATATGAGCAGAAGATGCTTAACAAGCTTCTTTTGATTGGTAGCGAAAAAGGTGGCGCCA 1826
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1697 TATATGAGCATAAAATGCTTAACAAGCTTCTTTTGATTGGTAATGAAAAAGGTGGCGCCA 1756
Query 1827 CTACAATTTACAAACAAGCAAGGTCTCTCTACAACGTCTCATTCTCTTTAGAAGACCGTG 1886
|||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 1757 CTACAATTTACAAACAAGCAAGGTCTCTCTACAACGTCTCCTTCTCTGTAGACGACCGTG 1816
Query 1887 AAAGAATCAAATTCATAATCCAAACAAATCTCTATACCTATCTGGCAATGGTTCTTGAGG 1946
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 AAAAAATCAAATTCATTATCCAAACAAATCTCTATACCTATCTGGCAATGGTTCTTGAGG 1876
Query 1947 CACATGAAAGATTTGAAAAAGAGATGAGCAATGACCAGTCTTCAGGCAATGTGGGAGATG 2006
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1877 CACATGAAAGATTTGAAAAAGAGATGAGCAATGACCAGTCTTCAGGTAATGTGGGAGATG 1936
Query 2007 AAACCAGTGC-AAAACCAGGTAACTCGATCAACCCGAGACTAAAACATTTTTCAGATTGG 2065
|||||||||| |||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 AAACCAGTGCTAAAA-CTGTTAACTCGATCAACCCGAGACTAAAACATTTTTCAGATTGG 1995
Query 2066 GTTTTGAAAGAAAAGGAAGACGGAAACCTGAAGATATTTCCACCATCAAGCCGTGAGAAT 2125
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996 CTTCTGAAAGAAAAGGAAGACGGAAACCTGAAGATATTTCCACCATCAAGCCGTGAGAAT 2055
Query 2126 GCTCAAACCGTTGCAGATCTCTGGAGAGTACCAGCTATTCAAGCCACCTACAAAAGACTT 2185
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2056 GCACAAACTGTTGCAGATCTCTGGAGAGTACCGGCTATTCAAGCCACCTACAAAAGACTT 2115
Query 2186 CGCGATACACTTCCCAGGAACGCCGTTTATTTTCTTGAAAGAATTCTTGAGATCTCGAGA 2245
||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2116 CGCGATAGACTTCCCAGAAACGCCGTTTATTTTCTTGAACGAATTCTTGAGGTCTCGAGA 2175
Query 2246 TCAGAATACGATCCTTCTGATATGGACATATTGCAAGCGGAAGGACTCTCCTCTATGGAA 2305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 TCAGAATACGATCCTTCTGATATGGACATATTGCAAGCGGAAGGACTCTCCTCTATGGAA 2235
Query 2306 GGACTTTCTTGTGTGGACTTCTCATTCCCATCAACTTCTCAAGAAGAGTCTCTTGAGAGC 2365
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2236 GGACTTTCTTGTGTGGACTTCTCATTCCCATCAACTTCTCAAGAAGAGACTCTTGAGAGC 2295
Query 2366 GATTATCAACATGATACAGACATGAAGTACCAACTCATCCGGCTAAATCCGAGAAGCCTT 2425
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2296 GATTATCAACACGATCCAGACATGAAGTACCAACTCATCCGGCTAAATCCGAGAAGCCTT 2355
Query 2426 GGTGAAAACTGGAAATTGCTGGAAATGTTTGAAGACGCTGACTTGGTGATATTTTGTGTC 2485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2356 GGTGAAAACTGGAAATTGCTGGAAATGTTTGAAGACGCTGACTTGGTGATATTTTGTGTC 2415
Query 2486 TCACTAACAGACTATGCAGAAAACATAGAAGACGGTGAGGGGAATATTGTGAACAAGATG 2545
||| ||||||| |||| |||| |||||||||||||||| |||||| ||||||||||||||
Sbjct 2416 TCATTAACAGATTATGGAGAATACATAGAAGACGGTGATGGGAATCTTGTGAACAAGATG 2475
Query 2546 CTTGCAACCAAACAGCTTTTCGAGAACATGGTGACTCACCCGAGCCTAGCTAACAAAAGG 2605
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2476 CTTGCAAACAGACAGCTTTTCGAGAACATGGTGACTCACCCGAGCCTAGCTAACAAAAGG 2535
Query 2606 TTTCTTTTGGTTCTAACCAAATTTGATCTCCTAGAAGAAAAGATCGAAGAGGTTCCTCTA 2665
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2536 TTCCTTTTGGTTCTAACAAAATTTGATCTCCTAGAAGAAAAGATCGAAGAGGTACCTCTA 2595
Query 2666 AGAACCTGTGAGTGGTTTGAAGACTTCAACCCATTGATCAGCCAGAACCAGACGAGCAGA 2725
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2596 AGAACCTGTGAGTGGTTCGAAGACTTCAACCCATTGATCAGCCAGAACCAGACGAGCAGA 2655
Query 2726 CACAACCCTCCAATGGCTCAGCGTGCTTTCCATTACATTGGATATAAGTTCAAGAGACTC 2785
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2656 CACAACCCTCCAATGGCTCAGCGTGCTTTCCATTACATTGGTTATAAGTTCAAGAGACTC 2715
Query 2786 TATGACTCAATCTTGGAACCCGTAAATATGCGTGGAAGGAGCTTTAAGCCAAAATTGTTT 2845
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 2716 TATGACTCAATCTTGGAACCAGTAAATATGCGTGGAAGGAGCTTTAGGCCAAAATTGTTT 2775
Query 2846 GTTTGTCAAGTGAGCTTGGAGAGTGATACTGTGGACAATGCACTGAGGTATGCGAGAGAG 2905
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2776 GTTTGTCAAGTGAGCTTGGAGAGTGATACTGTGGACAATGCAATGAGGTATGCGAGAGAG 2835
Query 2906 ATTCTCAAGTGGCATGTTGAAGAAACTTCCATGTTCCAAGAGATGTCTACTACTAGCATA 2965
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2836 ATTCTCAAGTGGCATGTTGAAGAAACTTCCATGTTCCAAGAGATGTCTACTACTAGCATC 2895
Query 2966 GAGGCCAGCTCGTCCTCTTGATATTTTTTC-CTAAAATTCTTTCTTTCTTT--------G 3016
|||||||||||||||||||||| ||||| | |||||||||||||||||||| |
Sbjct 2896 GAGGCCAGCTCGTCCTCTTGAT-TTTTTCCTCTAAAATTCTTTCTTTCTTTCTTTCTTTG 2954
Query 3017 TGGAAATTACATAAGTTTGTTTCTCTCTCTGTGTGTATGTTTGTTGTATATGTAGTAGTG 3076
||||||||||||| |||||| || | |||||||||| ||| || ||||| |
Sbjct 2955 TGGAAATTACATA-GTTTGT--CTGT----GTGTGTATGTATGT---AT--GTAGT-GCC 3001
Query 3077 TGAAGATACATTCATGTGATTGATTTTTCAGGGGaaaaaaaaTA-GAGAA 3125
|||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 3002 --AAGATACATTCATGTGATTGATTTTTCAGGAAAAAAAAAAAAAGAGAA 3049
Score = 322 bits (174), Expect = 1e-86
Identities = 243/275 (88%), Gaps = 9/275 (3%)
Strand=Plus/Plus
Query 4 GTCAAGTCCTCGTCTTTTACTAGTGTATA-CG-ATCCAACCCATCTTTCTGTCTTTCTTC 61
|||||||| |||||||||||||||| | | | | | | ||| | |||||||||||||
Sbjct 1 GTCAAGTCTTCGTCTTTTACTAGTG-AGAGAGAAGACGATCCAACCATCTGTCTTTCTTC 59
Query 62 TTTTTGTTTACTTCTTCTGCAAATTCCCTTTTCCCGGAAAATTTATTTGCTGATTTTTCT 121
|||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 60 TTTTTGTTTACTTCTTCTACATATTCCC-TTTCCCGGAAAATTTATTTGCTGATTTTTCT 118
Query 122 TCCTTCCATCGCCACTTTCCTGGaaaaaaaaaCTAAA-TTTCGTCTCTTTCTTTAAGCTA 180
|||||||||| ||||||||||| ||||||||| | | ||||||||||||||||||||||
Sbjct 119 TCCTTCCATCACCACTTTCCTG-AAAAAAAAATTCGACTTTCGTCTCTTTCTTTAAGCTA 177
Query 181 AAGGAGCTTTCTGTGATCAATTTTTTCTATATTTCTGTAGTTGCGTTCTTATTTCACGC- 239
||| |||||| |||||||||||||| ||||||||||| ||||| |||||| ||||||||
Sbjct 178 AAGAAGCTTTATGTGATCAATTTTT-CTATATTTCTGGAGTTGGGTTCTTGTTTCACGCT 236
Query 240 GCTTTGTGATTTGATTATTTAAGCCACTAATGGCT 274
| ||| |||||||||||| ||||||||||||||||
Sbjct 237 GTTTT-TGATTTGATTATATAAGCCACTAATGGCT 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119032015625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5