BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34400.1
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944465 jgi|Araly1|944465|scaffold_700694.1 824 0.0
> Ahg944465 jgi|Araly1|944465|scaffold_700694.1
Length=1162
Score = 824 bits (446), Expect = 0.0
Identities = 702/819 (86%), Gaps = 44/819 (5%)
Strand=Plus/Plus
Query 108 GATCCAAGATGGCCTCTTCAATGGCTAG-CAATGATTTCCAGCTCCCTCCACGTTTCTTC 166
||||||| || |||||||||||||| | || ||||||| |||||||||||||||||
Sbjct 1 GATCCAACATCTCCTCTTCAATGGCT-GCCACTGATTTCGTTTTCCCTCCACGTTTCTTC 59
Query 167 ACTGTTTTCGTCTCCCATTTCAGCTCAGAGTT-CATGGTGATCCCAGTTTCCTACTACGA 225
| ||||| |||||||| |||| |||||| || |||| || ||||| || |||||||||
Sbjct 60 AAAGTTTTTGTCTCCCACTTCACCTCAGA-TTCCATGATGCTCCCAATTGCCTACTACGG 118
Query 226 TCA-CATTCCACA-TCGTTTCCCCAAGACTGTGATTCTCCGAGGACCTGGTGGATGCTCC 283
||| | ||||| | |||||| | ||| || |||||||||||||||||||||||||||||
Sbjct 119 TCATC-TTCCA-AGTCGTTTGCACAAAACGGTGATTCTCCGAGGACCTGGTGGATGCTCT 176
Query 284 TGGAAGGTAGCGACGGA-GATAAAGGATGATGAAGTGCTTTTTTCACAAGGATGGCCCAA 342
||||| ||||| || | |||||| || | ||||||| ||| |||||||||||| ||||
Sbjct 177 TGGAATGTAGCCAC-AACGATAAATGAAAAAGAAGTGCATTTCTCACAAGGATGGGCCAA 235
Query 343 ATTTGTTCG-GGATAATACTCTTAACGATGGAGACTTTTTGACCTTTGCCTATAATGGAG 401
||| ||| | |||||| ||||||| |||||||||| |||||||||||| ||||||||||
Sbjct 236 ATTCGTT-GAGGATAACACTCTTAGCGATGGAGACATTTTGACCTTTGTGTATAATGGAG 294
Query 402 -CTCACATATTCGAGGTCAGTATCTTTCGCGGCTACGACGCATGTAAAGAGATTAGCGAA 460
| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 295 AC-CACGTATTCGAGGTCAGTATCTATCGCGGCTACGATGCATGTAAAGAGATTAGCGCA 353
Query 461 GTCACTGAATTGGAAGAGGA-AGAAGAAGACAGTGTTATATCTCTGAGCAGTGAAGACAC 519
||||||||| |||||||||| | |||||||||||||| | |||||||||||||||||||
Sbjct 354 GTCACTGAAGTGGAAGAGGACA-AAGAAGACAGTGTTTTTTCTCTGAGCAGTGAAGACA- 411
Query 520 A-GACACTGGTGCTAAATCTGAGATGAAGAATACAG-TCCCGGAAGGCAGAGACAAAGGA 577
| |||||| || || |||||| ||||||||| || | |||||||||| ||||||||||||
Sbjct 412 ATGACACTTGTTCTCAATCTGTGATGAAGAACAC-GATCCCGGAAGGAAGAGACAAAGGA 470
Query 578 AAGTCAAAAGTGGAAGTTGTGGAGGATTCTGATGACGATGAGGAGGAGGATAGTGTTTAT 637
|||||||||||||||||||||| |||| |||||||| || | |||||||||||||||
Sbjct 471 AAGTCAAAAGTGGAAGTTGTGGGGGATCCTGATGAC---GA--A-GAGGATAGTGTTTAT 524
Query 638 TCTGAAAGCAGTGAAGAAACAGAGACAGACACTGATTCTGAATTCAAGGTGGCCAAGCCA 697
|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 525 TCTGCAAGCGGTGAAGAAACAGAGACAGACACTGATTCTGAATTCCAGGTGGCCAAGACA 584
Query 698 ACAATACCAAAAAGCCAGAAGAAAGGAAAGAAGAAAGAACAAGTTGTGGAGTCCTCTGAT 757
||||||||||||||| |||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 585 ACAATACCAAAAAGCAAGAAGAAAGGGAAGAAGAAAGAACAGGTTGTGGAGTCTTCTGAT 644
Query 758 GACGAGGAAGACGAAGAGGAGGACAGTGACAGTGATTACATTGAAACGTTTGGTCAATTG 817
|| || | | | | | | |||||||||||||||||| ||||||||||||||||||
Sbjct 645 GA--AG-A---C-A-GTG-A---CAGTGACAGTGATTACATCGAAACGTTTGGTCAATTG 692
Query 818 GATATTGAAGAGAATTCCATCAGTGAGGAGGACAGTTCTTATGCTCCTGATAAAGAAGAC 877
||||||||||||||||||| |||||||||||| |||||||||||||| ||| | |||| |
Sbjct 693 GATATTGAAGAGAATTCCAACAGTGAGGAGGATAGTTCTTATGCTCCAGATGACGAAGGC 752
Query 878 ACAGCCACTGCCTCTTTTGTCAAACCAAAGGTTGCAAAT 916
||| ||||| | | |||||||||||||| ||||||
Sbjct 753 ACATCCACT---TGT---GTCAAACCAAAGGTGGCAAAT 785
Score = 501 bits (271), Expect = 6e-141
Identities = 350/389 (90%), Gaps = 2/389 (1%)
Strand=Plus/Plus
Query 942 AGGCGGCAAA-GAAGAGGAAGAAAGTCGATCCCATGATCAAGAATCCTGAGAGATACCTC 1000
||| |||||| | || || ||||||||| || | |||||| |||||||||| ||| ||
Sbjct 775 AGGTGGCAAATG-TGAAGAGGAAAGTCGAGCCTAAGATCAAAAATCCTGAGACATATCTG 833
Query 1001 GATGATCCTAAGAATATCCATTTCGAGACAAACGTGAAGAATAGGTTATACGAGCTGTTG 1060
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 834 GATGATCCAAAGAATATTCATTTCGAGACAAACGTGAAGAATAGATTATACGAGCTGTTG 893
Query 1061 GTTCATGCACAACTGGTGAAAGACTATTGCTTGAGGTTTGGAGACTATGTTAACTACATC 1120
|||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||
Sbjct 894 GTTCATGCACAACTGGTGAAAGACTATTGCTTGAAGTTTGGAGACCACGTTTACTACATC 953
Query 1121 GACAGGTTCGGGAAACTAAGTGCTAAAACAGCCAAATGGAAGGATCAGCGTGTTTGTATC 1180
||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 954 GACAGAATCGGGAAACTAAAAGCTAAAACAGCAAAATGGAAGGATCAGCGTGTGTGTATC 1013
Query 1181 AAAAGATGGATGCGCATATGCAAGAGGAACAAGTTGAAGAAAGAAGACCGCATTTTGTGT 1240
|||| |||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 1014 AAAAAATGGATGCGCATATGCGATAGGAACAAATTGAAGAAAGAAGACCGCATTTTGTGT 1073
Query 1241 GAGCTCTTGCGCAAGGGAACTTTCGTTTACGCAATCAAACTCCATGTCATCCGCGGTAAG 1300
||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||
Sbjct 1074 GAGCTCTTGCGCAAGGGAACTTTTGTGTACGCAATCAAACTCCACATCATCCGCGGAAAA 1133
Query 1301 GATCTGTAGACGCTAGCAGTATGAGTAGA 1329
|||||||||||||| |||| ||||||||
Sbjct 1134 AATCTGTAGACGCTATCAGTGTGAGTAGA 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5