BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34400.1 Length=1486 Score E Sequences producing significant alignments: (Bits) Value Ahg944465 jgi|Araly1|944465|scaffold_700694.1 824 0.0 > Ahg944465 jgi|Araly1|944465|scaffold_700694.1 Length=1162 Score = 824 bits (446), Expect = 0.0 Identities = 702/819 (86%), Gaps = 44/819 (5%) Strand=Plus/Plus Query 108 GATCCAAGATGGCCTCTTCAATGGCTAG-CAATGATTTCCAGCTCCCTCCACGTTTCTTC 166 ||||||| || |||||||||||||| | || ||||||| ||||||||||||||||| Sbjct 1 GATCCAACATCTCCTCTTCAATGGCT-GCCACTGATTTCGTTTTCCCTCCACGTTTCTTC 59 Query 167 ACTGTTTTCGTCTCCCATTTCAGCTCAGAGTT-CATGGTGATCCCAGTTTCCTACTACGA 225 | ||||| |||||||| |||| |||||| || |||| || ||||| || ||||||||| Sbjct 60 AAAGTTTTTGTCTCCCACTTCACCTCAGA-TTCCATGATGCTCCCAATTGCCTACTACGG 118 Query 226 TCA-CATTCCACA-TCGTTTCCCCAAGACTGTGATTCTCCGAGGACCTGGTGGATGCTCC 283 ||| | ||||| | |||||| | ||| || ||||||||||||||||||||||||||||| Sbjct 119 TCATC-TTCCA-AGTCGTTTGCACAAAACGGTGATTCTCCGAGGACCTGGTGGATGCTCT 176 Query 284 TGGAAGGTAGCGACGGA-GATAAAGGATGATGAAGTGCTTTTTTCACAAGGATGGCCCAA 342 ||||| ||||| || | |||||| || | ||||||| ||| |||||||||||| |||| Sbjct 177 TGGAATGTAGCCAC-AACGATAAATGAAAAAGAAGTGCATTTCTCACAAGGATGGGCCAA 235 Query 343 ATTTGTTCG-GGATAATACTCTTAACGATGGAGACTTTTTGACCTTTGCCTATAATGGAG 401 ||| ||| | |||||| ||||||| |||||||||| |||||||||||| |||||||||| Sbjct 236 ATTCGTT-GAGGATAACACTCTTAGCGATGGAGACATTTTGACCTTTGTGTATAATGGAG 294 Query 402 -CTCACATATTCGAGGTCAGTATCTTTCGCGGCTACGACGCATGTAAAGAGATTAGCGAA 460 | ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| | Sbjct 295 AC-CACGTATTCGAGGTCAGTATCTATCGCGGCTACGATGCATGTAAAGAGATTAGCGCA 353 Query 461 GTCACTGAATTGGAAGAGGA-AGAAGAAGACAGTGTTATATCTCTGAGCAGTGAAGACAC 519 ||||||||| |||||||||| | |||||||||||||| | ||||||||||||||||||| Sbjct 354 GTCACTGAAGTGGAAGAGGACA-AAGAAGACAGTGTTTTTTCTCTGAGCAGTGAAGACA- 411 Query 520 A-GACACTGGTGCTAAATCTGAGATGAAGAATACAG-TCCCGGAAGGCAGAGACAAAGGA 577 | |||||| || || |||||| ||||||||| || | |||||||||| |||||||||||| Sbjct 412 ATGACACTTGTTCTCAATCTGTGATGAAGAACAC-GATCCCGGAAGGAAGAGACAAAGGA 470 Query 578 AAGTCAAAAGTGGAAGTTGTGGAGGATTCTGATGACGATGAGGAGGAGGATAGTGTTTAT 637 |||||||||||||||||||||| |||| |||||||| || | ||||||||||||||| Sbjct 471 AAGTCAAAAGTGGAAGTTGTGGGGGATCCTGATGAC---GA--A-GAGGATAGTGTTTAT 524 Query 638 TCTGAAAGCAGTGAAGAAACAGAGACAGACACTGATTCTGAATTCAAGGTGGCCAAGCCA 697 |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 525 TCTGCAAGCGGTGAAGAAACAGAGACAGACACTGATTCTGAATTCCAGGTGGCCAAGACA 584 Query 698 ACAATACCAAAAAGCCAGAAGAAAGGAAAGAAGAAAGAACAAGTTGTGGAGTCCTCTGAT 757 ||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 585 ACAATACCAAAAAGCAAGAAGAAAGGGAAGAAGAAAGAACAGGTTGTGGAGTCTTCTGAT 644 Query 758 GACGAGGAAGACGAAGAGGAGGACAGTGACAGTGATTACATTGAAACGTTTGGTCAATTG 817 || || | | | | | | |||||||||||||||||| |||||||||||||||||| Sbjct 645 GA--AG-A---C-A-GTG-A---CAGTGACAGTGATTACATCGAAACGTTTGGTCAATTG 692 Query 818 GATATTGAAGAGAATTCCATCAGTGAGGAGGACAGTTCTTATGCTCCTGATAAAGAAGAC 877 ||||||||||||||||||| |||||||||||| |||||||||||||| ||| | |||| | Sbjct 693 GATATTGAAGAGAATTCCAACAGTGAGGAGGATAGTTCTTATGCTCCAGATGACGAAGGC 752 Query 878 ACAGCCACTGCCTCTTTTGTCAAACCAAAGGTTGCAAAT 916 ||| ||||| | | |||||||||||||| |||||| Sbjct 753 ACATCCACT---TGT---GTCAAACCAAAGGTGGCAAAT 785 Score = 501 bits (271), Expect = 6e-141 Identities = 350/389 (90%), Gaps = 2/389 (1%) Strand=Plus/Plus Query 942 AGGCGGCAAA-GAAGAGGAAGAAAGTCGATCCCATGATCAAGAATCCTGAGAGATACCTC 1000 ||| |||||| | || || ||||||||| || | |||||| |||||||||| ||| || Sbjct 775 AGGTGGCAAATG-TGAAGAGGAAAGTCGAGCCTAAGATCAAAAATCCTGAGACATATCTG 833 Query 1001 GATGATCCTAAGAATATCCATTTCGAGACAAACGTGAAGAATAGGTTATACGAGCTGTTG 1060 |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 834 GATGATCCAAAGAATATTCATTTCGAGACAAACGTGAAGAATAGATTATACGAGCTGTTG 893 Query 1061 GTTCATGCACAACTGGTGAAAGACTATTGCTTGAGGTTTGGAGACTATGTTAACTACATC 1120 |||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||||| Sbjct 894 GTTCATGCACAACTGGTGAAAGACTATTGCTTGAAGTTTGGAGACCACGTTTACTACATC 953 Query 1121 GACAGGTTCGGGAAACTAAGTGCTAAAACAGCCAAATGGAAGGATCAGCGTGTTTGTATC 1180 ||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct 954 GACAGAATCGGGAAACTAAAAGCTAAAACAGCAAAATGGAAGGATCAGCGTGTGTGTATC 1013 Query 1181 AAAAGATGGATGCGCATATGCAAGAGGAACAAGTTGAAGAAAGAAGACCGCATTTTGTGT 1240 |||| |||||||||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct 1014 AAAAAATGGATGCGCATATGCGATAGGAACAAATTGAAGAAAGAAGACCGCATTTTGTGT 1073 Query 1241 GAGCTCTTGCGCAAGGGAACTTTCGTTTACGCAATCAAACTCCATGTCATCCGCGGTAAG 1300 ||||||||||||||||||||||| || ||||||||||||||||| |||||||||| || Sbjct 1074 GAGCTCTTGCGCAAGGGAACTTTTGTGTACGCAATCAAACTCCACATCATCCGCGGAAAA 1133 Query 1301 GATCTGTAGACGCTAGCAGTATGAGTAGA 1329 |||||||||||||| |||| |||||||| Sbjct 1134 AATCTGTAGACGCTATCAGTGTGAGTAGA 1162 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55611757700 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5