BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34410.1
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944463 jgi|Araly1|944463|scaffold_700692.1 1310 0.0
> Ahg944463 jgi|Araly1|944463|scaffold_700692.1
Length=852
Score = 1310 bits (709), Expect = 0.0
Identities = 807/854 (94%), Gaps = 7/854 (1%)
Strand=Plus/Plus
Query 93 AGAAGAAGGAATCGAGAGTCGGGTATGCATTATCCTAACAACAGAACCGAATTCGTCGGA 152
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 2 AGAAGAAGGAATCGAGATTCGGGTATGCATTATCCTAACAACCGAACCGAATTCGTCGGA 61
Query 153 GCTCCAGCCCCAACCCGGTATCAAAAGGAGCAGTTGTCACCGGAGCAAGAGCTTTCAGTT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GCTCCAGCCCCAACCCGGTATCAAAAGGAGCAGTTGTCACCGGAGCAAGAGCTTTCAGTT 121
Query 213 ATTGTCTCTGCTTTGCAACACGTGATCTCAGGGGAAAACGAAACGGCGCCGTGTCAGGGT 272
| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 122 CTAGTCTCCGCTTTGCAACACGTAATCTCAGGGGAAAACGAAACGGCGCCGTATCAGGGG 181
Query 273 TTTTCCAGTGACAGCACAGTGATAAGCGCGGGAATGCCTCGGTTGGATTCAGACACTTGT 332
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTTTCCAGCGACAGCACAGTGATAAGCGCGGGAATGCCTCGGTTGGATTCAGACACTTGT 241
Query 333 CAAGTCTGTAGGATCGAAGGATGTCTCGGCTGTAACTACTTTTTCGCGCCAAATCAGAGA 392
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 242 CAAGTGTGTAGGATCGAAGGATGTCTCGGCTGCAACTACTTTTTCGCGCCAAATCAGAGA 301
Query 393 ATTGAAAAGAATCATCAACAAGAAGAAGAGATTACTAGTAGTAGTAACAGAAGAAGAGAG 452
||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 302 ATTGAAAAG-A--ATCAACAGGAAGAAGAGATTACTAGTAGTAGTAACAGTAGAAGAGAG 358
Query 453 AGCTCTCCCGTGGCGAAGAAAGCGGAAGGTGGCGGGAAAATCAGGAAGAGGAAGAACAAG 512
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGCTCGCCTGTGGCGAAGAAAGCGGAAGGTGGCGGGAAAATCAGGAAGAGGAAGAACAAG 418
Query 513 AAGAATGGTTACAGAGGAGTTAGGCAAAGACCTTGGGGAAAATTTGCAGCTGAGATCAGA 572
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 AAGAATGGTTACAGAGGAGTTAGGCAGAGACCTTGGGGAAAATTTGCAGCTGAGATCAGA 478
Query 573 GATCCTAAAAGAGCCACACGTGTTTGGCTTGGTACTTTCGAAACCGCCGAAGATGCGGCT 632
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 GATCCTAAGAGAGCGACACGTGTTTGGCTTGGTACTTTCGAAACCGCCGAGGATGCGGCT 538
Query 633 CGAGCTTATGATCGAGCCGCGATTGGATTCCGTGGGCCAAGGGCTAAACTCAACTTCCCC 692
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 539 CGAGCTTATGATCGAGCTGCGATTGGATTCCGTGGGCCACGGGCTAAACTCAACTTCCCC 598
Query 693 TTTGTGGATTACACGTCTTCAGTTTCATCTCCTGTTGCTGCTGATGATATAGGAGCAAAG 752
|||||||| ||||| ||||| |||||||||||||| |||| ||||||||| ||||||||
Sbjct 599 TTTGTGGACTACACTTCTTCTGTTTCATCTCCTGTGGCTGTTGATGATATTGGAGCAAAT 658
Query 753 GCAAGTGCAAGCGCCAGTGTGAGCGCCACAGATTCAGTTGAAGCAGAGCAATGGAACGGA 812
|| ||||||||||| || ||||| ||||| ||||| |||||||||||||||||| ||||
Sbjct 659 GCTAGTGCAAGCGCGAGCGTGAGTGCCACGGATTCTGTTGAAGCAGAGCAATGGCCCGGA 718
Query 813 -G-G-AGGAGGGGATTGCAATATGGAGGAGTGGATGAATATGATGATGATGATGGATTTT 869
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGAGAAGGAGGGGATTGCAATATGGAGGAGTGGATGAATATGATGATGATGATGGATTTT 778
Query 870 GGGAATGGAGATTCTTCAGATTCAGGAAATACAATTGCTGATATGTTCCAGTGATAAAT- 928
|||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 779 GGGAATGGAGATTCTTCAGATTCAGGGAACACTATTGCTGATATGTTCCAGTGATAGATA 838
Query 929 GAGCTCTTTCTTGT 942
||||||||||||||
Sbjct 839 GAGCTCTTTCTTGT 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51764642955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5