BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34412.1
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491224 jgi|Araly1|491224|fgenesh2_kg.7__657__AT4G34412.1 948 0.0
> Ahg491224 jgi|Araly1|491224|fgenesh2_kg.7__657__AT4G34412.1
Length=707
Score = 948 bits (513), Expect = 0.0
Identities = 615/662 (93%), Gaps = 16/662 (2%)
Strand=Plus/Plus
Query 8 TCTTTGACTAGTCTTCTTCTGACTTCGCCGAATGTGTGTCGATCTCCGGCGAAGTAATAA 67
||||||| ||||| ||||||||||||||||||| |||||||||||||||| | ||
Sbjct 1 TCTTTGATTAGTCCTCTTCTGACTTCGCCGAATCTGTGTCGATCTCCGGC---G----AA 53
Query 68 GTCGTAATAACCCTAAAAATCTTGCCCTCTTTTTCGCCGCCGGCTAAAGCTATGAAGGTT 127
||||||||||| |||||| | |||||||||||||||||| || |||||||||||| |
Sbjct 54 ---GTAATAACCCT-AAAATCGTCCCCTCTTTTTCGCCGCCGACTTAAGCTATGAAGGAT 109
Query 128 TTTAATCTTGACCGTGGAAACACTCTCTCTGTTTCCCTCTTCTCCGGTGTCACCAACTCC 187
||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 110 TTTCATCTTGACCGTGGAAACACTCTCTCTGTCTCCCTCTTCTCCGATGTCACCAACTCC 169
Query 188 AAGGAGCTCTTGAATTCAATGCTTGACGGAAGTCTGAAGCTGGAGGTCTCATTTCTCAAT 247
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 170 AAGGAGCTCTTGAATTCAATGCTTGATGGAAGTCTGAAGCTTGAGGTCTCATTTCTCAAT 229
Query 248 GCATCACTTATTCCAGACATTTTTCCTCTATTGGCTGCTGCTCAGAAAGCACTTATCTCC 307
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 230 GCATCACTTATTCCAGACATTTTTCCTCTCTTGGCTGCTGCTCAGAAAGCACTTATCTCC 289
Query 308 AAATCACGCGATTCCTTATCAACCAGAACTCTTCATTCTGAGCTTGTCTACAATTACTCA 367
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 290 AAATCACGCGATTCCTTATCAACCAGAACTCTTCATTCTGAGCTCGTTTACAATTACTCG 349
Query 368 GGATCTAAGCACATTACAGAATCATTGAAACGATGTGGGATTTCTGAGAA-CACTACTTA 426
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 350 GGATCTAAGCATATTACAGAATCATTGAAACGATGTGGGATTTCTGA-AAGCACTACTTA 408
Query 427 CATTCTAGCTGCCCGGTTCAATGCTTCTCCCGTTGAGATGGAGGAGGTGGCGAAATTGAT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CATTCTAGCTGCCCGGTTCAATGCTTCTCCCGTTGAGATGGAGGAGGTGGCGAAATTGAT 468
Query 487 CAACGGGAAGGAGATTGATTTGGAGGAATTGAAGACACATGCAAATCAAGCCAATATACT 546
| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 469 CCACGGGAAGGAAATTGATTTGGAGGAATTAAAGACGCATGCAAATCAAGCCAATATACT 528
Query 547 AAAGCATTACAAGATAACTAGCCAAGAGCTCGGAATTTCCTCTCTGGGAGATGCCATTGT 606
||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||
Sbjct 529 AAAGCATTACAAGATAACTAGCCAAGAACTAGGAATTTCCTCTCTTGGAGATGCGATTGT 588
Query 607 TTGTCGAATAGCTGCACGCGATGCTTTGTAGGAGTAGACATCTTTTCTTTATGTCTT-TT 665
|||||| |||||||||||||| |||||||| ||| ||| |||||||||||| |||| ||
Sbjct 589 TTGTCGGATAGCTGCACGCGACGCTTTGTAAGAGGAGA--TCTTTTCTTTATTTCTTATT 646
Query 666 GT 667
||
Sbjct 647 GT 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28630310667
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5