BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34420.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944461 jgi|Araly1|944461|scaffold_700690.1 1827 0.0
Ahg480426 jgi|Araly1|480426|fgenesh2_kg.3__3127__AT2G15730.1 989 0.0
> Ahg944461 jgi|Araly1|944461|scaffold_700690.1
Length=1515
Score = 1827 bits (989), Expect = 0.0
Identities = 1086/1132 (96%), Gaps = 10/1132 (1%)
Strand=Plus/Plus
Query 287 GTGTCTGaaaa--aaaTTCAATGTCTTTATGTTCTGTTCTTTTCTGATCTCTCTGAATCT 344
||||||||||| ||| |||||||||||||||||||||| ||||||||||||| | |||
Sbjct 389 GTGTCTGAAAAGGAAAATCAATGTCTTTATGTTCTGTTCCTTTCTGATCTCTCAGTCTCT 448
Query 345 CTCTCTATCGCGACAGCCATGGCCGAAGACCCTTCTTTCCTCCCCAAGGATGGTTTTGTC 404
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 ATCTCTATCGCGACAGCCATGGCCGAAGACCCTTCTTTCCTCCCCAAGGATGGTTTTGTC 508
Query 405 TTGAAGCTTCCTAAAAAGTCATCACTTGTATTGAGAATGGTCGTTCTCCTCTTTGTAATG 464
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 509 TTGAAGCTTCCTAAAAAGTCCTCACTTGTATTGAGAATGGTCGTTCTCCTCTTTGTAATG 568
Query 465 GTCTGTGCTGTGTACATTTGCTCCATTTGTCTTAAGCAAATAGGAGTTAGTCCAAACTAT 524
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 569 GTCTGTGCTGTGTACATTTGCTCGATTTGTCTTAAGCAAATAGGAGTTAGCCCAAACTAT 628
Query 525 GGTTTCTTGAACGTTGAAGTGTTTGAGAGGCCTTGTCCTGAGCCTAACATCGAACCGTGG 584
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 629 GGTTTCTTGAACGTTGAAGTGTTTGAGAGGCCTTGTCCTGAGCCTAACATTGAACCGTGG 688
Query 585 GACATTCCT-TTTGTGCATTACCCTAAACCAAAGACATATAACAGGGATGAATGTTCTTG 643
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GACATT-CTATTTGTGCATTACCCTAAACCAAAGACATATAACAGGGATGAATGTTCTTG 747
Query 644 CCACCCGGTTAGGTACTTTGCGATTCTATCGATGCAGAGATCTGGTAGTGGCTGGTTTGA 703
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 748 CCACCCGGTTAGGTACTTTGCGATTCTCTCGATGCAGAGATCTGGCAGTGGCTGGTTTGA 807
Query 704 GACTTTGTTAAACAATCATACTAACATAAGCTCCAACGGGGAGATATTTTCTGTGAAAGA 763
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 808 GACTTTGTTAAACAATCATACCAACATAAGCTCGAACGGGGAGATCTTTTCTGTGAAAGA 867
Query 764 TAGGAGGGCTAATGTTTCCACCATTTTCGAGACTCTTGACAAAGTCTATAATCTAGACTG 823
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 868 TAGGAGGGCTAATGTTTCCACCATTTTTGAGACTCTTGACAAAGTCTATAATCTAGACTG 927
Query 824 GTTGAGTAGTGCCTCTAAGAACGAGTGCACTTCCGCTGTTGGCTTCAAGTGGATGCTTAA 883
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 928 GTTGAGTAGTGCCTCTAAGAACGAGTGCACTTCTGCTGTTGGCTTCAAGTGGATGCTTAA 987
Query 884 TCAGGGTCTAATGAAACATCATGAAGAAATAGTAGAATACTTCAAAACCCGAGGCGTCTC 943
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TCAGGGTTTAATGAAACATCATGAAGAAATAGTAGAATACTTCAAAACCCGAGGCGTCTC 1047
Query 944 TGCGATTTTCCTATTCAGAAAAAACCTATTGCGCCGCATGATATCAGTACTCGCAAACTC 1003
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1048 TGCGATTTTCCTATTCAGAAAAAACCTATTGCGTCGCATGATATCAGTACTTGCAAACTC 1107
Query 1004 TTATGACAGAGATGCTAAGCTACTAAACGGGACTCACAAGTCTCACACCCATTCGGCCAA 1063
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1108 TTATGACAGAGATGCTAAGCTATTAAACGGAACTCACAAGTCTCACACCCATTCGGCCAA 1167
Query 1064 AGAAGCTGAGATATTAGCAGGTTACAAACCAATGATCAACACAACACTTTTAATAAATGA 1123
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1168 AGAAGCTGAGATATTGGCGGGTTACAAGCCAATGATCAACACAACACTTTTAATAAACGA 1227
Query 1124 GCTGAGACAGATTCAAGAAATGACTTTGAAAGCTTTG-ACTTACTTCAATACCACTCGAC 1182
||||| ||||||||||||||||||||||||||| ||| | |||||| |||||||||||||
Sbjct 1228 GCTGAAACAGATTCAAGAAATGACTTTGAAAGCCTTGGA-TTACTTTAATACCACTCGAC 1286
Query 1183 ATATCCTTGTCTACTACGAAGATGTTGTCAAGAACCTCACGAGACTAGACGATGTACAGG 1242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 ATATCCTTGTCTACTACGAAGATGTTGTCAAGAACCTCACGAGACTAGACGATGTACAGA 1346
Query 1243 AGTTTCTAAAGGTACCAAAACGTAAGTTAAAGAGTAGGCAAGTGAAGATTCATGGAGGTT 1302
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 AGTTTCTAAAGGTCCCAAAACGTAAGTTAAAGAGTAGGCAAGTGAAGATTCATGGAGGTT 1406
Query 1303 CATTGTCAAAACATGTACAGAATTGGGAAGAGGTC-ATGACCACACTTAAAGGAACCAAT 1361
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1407 CATTGTCACAACATGTACAGAATTGGGAAGAGGTCCAA-ACCACACTTAAAGGAACCAAT 1465
Query 1362 TTCGAAAATTTCTTACACCAAGAATTTTAAtttttttttGTATATATCAGAC 1413
|||||||||||||||| ||||||||||||| |||||| ||| |||||||||
Sbjct 1466 TTCGAAAATTTCTTACGCCAAGAATTTTAAATTTTTT--GTACATATCAGAC 1515
> Ahg480426 jgi|Araly1|480426|fgenesh2_kg.3__3127__AT2G15730.1
Length=1433
Score = 989 bits (535), Expect = 0.0
Identities = 898/1070 (84%), Gaps = 38/1070 (4%)
Strand=Plus/Plus
Query 325 TTTCTGATCTCTCTGAATCTCT--CTCTATCGCGACAGCCATGGCCGAAG-ACCCTTCTT 381
||||| ||||||| |||||| ||| | || |||||||||| ||| | || | |||
Sbjct 91 TTTCTTCTCTCTCTCTATCTCTCCCTCGA-AGCAACAGCCATGGGCGACGAACAC-TCTC 148
Query 382 TCCTCCCCAAGGATGGTTTTGTCTTGAAGCTTCCTAAAAAGTCATCACTTGTATTGAGAA 441
|| |||| |||||| |||||||||| |||||||||||||| ||| ||||||| || ||||
Sbjct 149 TCATCCCAAAGGATAGTTTTGTCTTCAAGCTTCCTAAAAAATCACCACTTGTGTTAAGAA 208
Query 442 TGGTCGTTCTCCTCTTTGTAATGGTCTGTGCTGTGTACATTTGCTCCATTTGTCTT-AAG 500
||| |||||| | ||||| ||||| ||| |||| || |||||||| |||||| || |||
Sbjct 209 CGGTTGTTCTCTTGTTTGTGATGGTTTGTACTGTTTATATTTGCTCTATTTGT-TTGAAG 267
Query 501 CAAATAGGAGTTAGTCCAAACT-ATGGTTTCTTGAACGTTGAAGTGTTTGAGAGGCCTTG 559
||||| || ||| |||| | | ||| |||||||| ||||||||||||||||| | ||
Sbjct 268 CAAATTGGTGTT-GTCCCTAGTGCTGGATTCTTGAATGTTGAAGTGTTTGAGAGACAGTG 326
Query 560 TCCTGAGCCTAACATCGAACCGTGGGACATTCCTTTTGTGCATTACCCTAAACCAAAGAC 619
||||||||||||||| ||||| |||||||| |||| ||| ||||| |||||||| |||||
Sbjct 327 TCCTGAGCCTAACATTGAACCTTGGGACATACCTTATGTCCATTATCCTAAACCTAAGAC 386
Query 620 ATATAACAGGGATGAATGTTCTTGCCA-CCCGGTTAGGTACTTTGCGATTCTATCGATGC 678
|| | |||||| |||||||| ||| | ||| |||||||| ||||| ||||| |||||||
Sbjct 387 TTACAGCAGGGAGGAATGTTCGTGCAATCCC-GTTAGGTATTTTGCTATTCTCTCGATGC 445
Query 679 AGAGATCTGGTAGTGGCTGGTTTGAGACTTT-GTTAAACAATCATACTAACATAAGCTCC 737
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 446 AGAGATCTGGTAGCGGCTGGTTTGAGACTTTACTT-AACAATCATACTAACATAAGCTCG 504
Query 738 AACGGGGAGATATTTTCTGTGAAAGATAGGAGGGCTAATGTTTCCACCATTTTCGAGACT 797
||||||||||| ||||| || |||||||||||||||||||| || || ||||| |||||
Sbjct 505 AACGGGGAGATCTTTTCGGTTAAAGATAGGAGGGCTAATGTGTCGACTATTTTTGAGAC- 563
Query 798 CTT-GACAAAGTCTATAATC-TAGACTGGTTGAGTAGTGCCTCTAAGAACGAGTGCACTT 855
||| |||||| | ||||| | |||| |||||||||||||| ||||||||||||||||| |
Sbjct 564 CTTGGACAAATTGTATAA-CTTAGATTGGTTGAGTAGTGCTTCTAAGAACGAGTGCACCT 622
Query 856 CCGCTGTTGGCTTCAAGTGGATGCTTAATCAGGGTCTAATGAAACATCATGAAGAAATAG 915
| || ||||| || |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 623 CTGCCGTTGGATTGAAGTGGATGCTTAATCAGGGTCTAATGAAACACCATGAAGAGATAG 682
Query 916 TAGAATACTTCAAAACCCGAGGCGTCTCTGCGATTTTCCTATTCAGAAAAAACCTATTGC 975
||||||||||||||||||||||||| ||||| |||||||| || |||| |||||| ||||
Sbjct 683 TAGAATACTTCAAAACCCGAGGCGTGTCTGCTATTTTCCTCTTTAGAAGAAACCTCTTGC 742
Query 976 GCCGCATGATATCAGTACTCGCAAACTCTTATGACAGAGATGCTAAGCTACTAAACGGGA 1035
|||| ||||| ||||| || ||||||||||| || ||||||||||||| | ||||||| |
Sbjct 743 GCCGGATGATTTCAGTTCTTGCAAACTCTTACGATAGAGATGCTAAGCCATTAAACGGTA 802
Query 1036 CTCACAAGTCTCACACCCATTCGGCC-AAAGAAGCTGAGATATTAGCAG-GTTACAAACC 1093
|||||||||| ||| |||||| || ||||| ||||||||||| || | | ||||||||
Sbjct 803 CTCACAAGTCCCACGTCCATTCC-CCTAAAGAGGCTGAGATATTGGC-GCGCTACAAACC 860
Query 1094 AATGATCAACACAA-CACTTTTAATAAATGAGCTGA-GACAGATTCAAGAAATGACTTTG 1151
| |||||||||| | | ||||| ||| ||| |||| | ||| ||||||| |||||||
Sbjct 861 ATTGATCAACACGAGC-CTTTTGATACCTGATCTGAAG-CAGGTTCAAGAGATGACTTC- 917
Query 1152 AAAG-CT-TTGACTTACTTCAATACCACTCGACATATCCTTG-TCTACTACGAAGATGTT 1208
|||| | ||| ||||||| |||||||| || ||||| || |||||||||||||||||
Sbjct 918 AAAGGCACTTG-CTTACTTTAATACCACCCGGCATATT-TTCCTCTACTACGAAGATGTT 975
Query 1209 GTCAAGAACCTCACGAGACTAGACGATGTACAGGAGTTTCTAAAGGTACCAAAACGTA-A 1267
|||||||||| ||| | |||||| ||||| || |||||||||||||| || |||| | |
Sbjct 976 GTCAAGAACCGCACTAAACTAGATGATGTGCAAGAGTTTCTAAAGGTCCCGAAAC-TCGA 1034
Query 1268 GTTAAAGAGTAGGCAAGTGAAGATTCATGGA-GGTTCATTGTCAAAACATGTACAGAATT 1326
||||||||||||||||||||||||||| | ||| ||||||||||||| ||||| ||||
Sbjct 1035 TTTAAAGAGTAGGCAAGTGAAGATTCATC-ATGGTCCATTGTCAAAACACGTACAAAATT 1093
Query 1327 GGGAAGAGGT-CATGACCACACTTAAAGGAACCAATTTCGAAAA-TTTCT 1374
|||||||||| || || ||||| ||||| ||| ||||||||| |||||
Sbjct 1094 GGGAAGAGGTGCAA-ACAACACTGAAAGGGACCGGTTTCGAAAACTTTCT 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5