BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34420.1 Length=1517 Score E Sequences producing significant alignments: (Bits) Value Ahg944461 jgi|Araly1|944461|scaffold_700690.1 1827 0.0 Ahg480426 jgi|Araly1|480426|fgenesh2_kg.3__3127__AT2G15730.1 989 0.0 > Ahg944461 jgi|Araly1|944461|scaffold_700690.1 Length=1515 Score = 1827 bits (989), Expect = 0.0 Identities = 1086/1132 (96%), Gaps = 10/1132 (1%) Strand=Plus/Plus Query 287 GTGTCTGaaaa--aaaTTCAATGTCTTTATGTTCTGTTCTTTTCTGATCTCTCTGAATCT 344 ||||||||||| ||| |||||||||||||||||||||| ||||||||||||| | ||| Sbjct 389 GTGTCTGAAAAGGAAAATCAATGTCTTTATGTTCTGTTCCTTTCTGATCTCTCAGTCTCT 448 Query 345 CTCTCTATCGCGACAGCCATGGCCGAAGACCCTTCTTTCCTCCCCAAGGATGGTTTTGTC 404 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 449 ATCTCTATCGCGACAGCCATGGCCGAAGACCCTTCTTTCCTCCCCAAGGATGGTTTTGTC 508 Query 405 TTGAAGCTTCCTAAAAAGTCATCACTTGTATTGAGAATGGTCGTTCTCCTCTTTGTAATG 464 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 509 TTGAAGCTTCCTAAAAAGTCCTCACTTGTATTGAGAATGGTCGTTCTCCTCTTTGTAATG 568 Query 465 GTCTGTGCTGTGTACATTTGCTCCATTTGTCTTAAGCAAATAGGAGTTAGTCCAAACTAT 524 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 569 GTCTGTGCTGTGTACATTTGCTCGATTTGTCTTAAGCAAATAGGAGTTAGCCCAAACTAT 628 Query 525 GGTTTCTTGAACGTTGAAGTGTTTGAGAGGCCTTGTCCTGAGCCTAACATCGAACCGTGG 584 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 629 GGTTTCTTGAACGTTGAAGTGTTTGAGAGGCCTTGTCCTGAGCCTAACATTGAACCGTGG 688 Query 585 GACATTCCT-TTTGTGCATTACCCTAAACCAAAGACATATAACAGGGATGAATGTTCTTG 643 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 689 GACATT-CTATTTGTGCATTACCCTAAACCAAAGACATATAACAGGGATGAATGTTCTTG 747 Query 644 CCACCCGGTTAGGTACTTTGCGATTCTATCGATGCAGAGATCTGGTAGTGGCTGGTTTGA 703 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 748 CCACCCGGTTAGGTACTTTGCGATTCTCTCGATGCAGAGATCTGGCAGTGGCTGGTTTGA 807 Query 704 GACTTTGTTAAACAATCATACTAACATAAGCTCCAACGGGGAGATATTTTCTGTGAAAGA 763 ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct 808 GACTTTGTTAAACAATCATACCAACATAAGCTCGAACGGGGAGATCTTTTCTGTGAAAGA 867 Query 764 TAGGAGGGCTAATGTTTCCACCATTTTCGAGACTCTTGACAAAGTCTATAATCTAGACTG 823 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 868 TAGGAGGGCTAATGTTTCCACCATTTTTGAGACTCTTGACAAAGTCTATAATCTAGACTG 927 Query 824 GTTGAGTAGTGCCTCTAAGAACGAGTGCACTTCCGCTGTTGGCTTCAAGTGGATGCTTAA 883 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 928 GTTGAGTAGTGCCTCTAAGAACGAGTGCACTTCTGCTGTTGGCTTCAAGTGGATGCTTAA 987 Query 884 TCAGGGTCTAATGAAACATCATGAAGAAATAGTAGAATACTTCAAAACCCGAGGCGTCTC 943 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 988 TCAGGGTTTAATGAAACATCATGAAGAAATAGTAGAATACTTCAAAACCCGAGGCGTCTC 1047 Query 944 TGCGATTTTCCTATTCAGAAAAAACCTATTGCGCCGCATGATATCAGTACTCGCAAACTC 1003 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1048 TGCGATTTTCCTATTCAGAAAAAACCTATTGCGTCGCATGATATCAGTACTTGCAAACTC 1107 Query 1004 TTATGACAGAGATGCTAAGCTACTAAACGGGACTCACAAGTCTCACACCCATTCGGCCAA 1063 |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 1108 TTATGACAGAGATGCTAAGCTATTAAACGGAACTCACAAGTCTCACACCCATTCGGCCAA 1167 Query 1064 AGAAGCTGAGATATTAGCAGGTTACAAACCAATGATCAACACAACACTTTTAATAAATGA 1123 ||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || Sbjct 1168 AGAAGCTGAGATATTGGCGGGTTACAAGCCAATGATCAACACAACACTTTTAATAAACGA 1227 Query 1124 GCTGAGACAGATTCAAGAAATGACTTTGAAAGCTTTG-ACTTACTTCAATACCACTCGAC 1182 ||||| ||||||||||||||||||||||||||| ||| | |||||| ||||||||||||| Sbjct 1228 GCTGAAACAGATTCAAGAAATGACTTTGAAAGCCTTGGA-TTACTTTAATACCACTCGAC 1286 Query 1183 ATATCCTTGTCTACTACGAAGATGTTGTCAAGAACCTCACGAGACTAGACGATGTACAGG 1242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1287 ATATCCTTGTCTACTACGAAGATGTTGTCAAGAACCTCACGAGACTAGACGATGTACAGA 1346 Query 1243 AGTTTCTAAAGGTACCAAAACGTAAGTTAAAGAGTAGGCAAGTGAAGATTCATGGAGGTT 1302 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1347 AGTTTCTAAAGGTCCCAAAACGTAAGTTAAAGAGTAGGCAAGTGAAGATTCATGGAGGTT 1406 Query 1303 CATTGTCAAAACATGTACAGAATTGGGAAGAGGTC-ATGACCACACTTAAAGGAACCAAT 1361 |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 1407 CATTGTCACAACATGTACAGAATTGGGAAGAGGTCCAA-ACCACACTTAAAGGAACCAAT 1465 Query 1362 TTCGAAAATTTCTTACACCAAGAATTTTAAtttttttttGTATATATCAGAC 1413 |||||||||||||||| ||||||||||||| |||||| ||| ||||||||| Sbjct 1466 TTCGAAAATTTCTTACGCCAAGAATTTTAAATTTTTT--GTACATATCAGAC 1515 > Ahg480426 jgi|Araly1|480426|fgenesh2_kg.3__3127__AT2G15730.1 Length=1433 Score = 989 bits (535), Expect = 0.0 Identities = 898/1070 (84%), Gaps = 38/1070 (4%) Strand=Plus/Plus Query 325 TTTCTGATCTCTCTGAATCTCT--CTCTATCGCGACAGCCATGGCCGAAG-ACCCTTCTT 381 ||||| ||||||| |||||| ||| | || |||||||||| ||| | || | ||| Sbjct 91 TTTCTTCTCTCTCTCTATCTCTCCCTCGA-AGCAACAGCCATGGGCGACGAACAC-TCTC 148 Query 382 TCCTCCCCAAGGATGGTTTTGTCTTGAAGCTTCCTAAAAAGTCATCACTTGTATTGAGAA 441 || |||| |||||| |||||||||| |||||||||||||| ||| ||||||| || |||| Sbjct 149 TCATCCCAAAGGATAGTTTTGTCTTCAAGCTTCCTAAAAAATCACCACTTGTGTTAAGAA 208 Query 442 TGGTCGTTCTCCTCTTTGTAATGGTCTGTGCTGTGTACATTTGCTCCATTTGTCTT-AAG 500 ||| |||||| | ||||| ||||| ||| |||| || |||||||| |||||| || ||| Sbjct 209 CGGTTGTTCTCTTGTTTGTGATGGTTTGTACTGTTTATATTTGCTCTATTTGT-TTGAAG 267 Query 501 CAAATAGGAGTTAGTCCAAACT-ATGGTTTCTTGAACGTTGAAGTGTTTGAGAGGCCTTG 559 ||||| || ||| |||| | | ||| |||||||| ||||||||||||||||| | || Sbjct 268 CAAATTGGTGTT-GTCCCTAGTGCTGGATTCTTGAATGTTGAAGTGTTTGAGAGACAGTG 326 Query 560 TCCTGAGCCTAACATCGAACCGTGGGACATTCCTTTTGTGCATTACCCTAAACCAAAGAC 619 ||||||||||||||| ||||| |||||||| |||| ||| ||||| |||||||| ||||| Sbjct 327 TCCTGAGCCTAACATTGAACCTTGGGACATACCTTATGTCCATTATCCTAAACCTAAGAC 386 Query 620 ATATAACAGGGATGAATGTTCTTGCCA-CCCGGTTAGGTACTTTGCGATTCTATCGATGC 678 || | |||||| |||||||| ||| | ||| |||||||| ||||| ||||| ||||||| Sbjct 387 TTACAGCAGGGAGGAATGTTCGTGCAATCCC-GTTAGGTATTTTGCTATTCTCTCGATGC 445 Query 679 AGAGATCTGGTAGTGGCTGGTTTGAGACTTT-GTTAAACAATCATACTAACATAAGCTCC 737 ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct 446 AGAGATCTGGTAGCGGCTGGTTTGAGACTTTACTT-AACAATCATACTAACATAAGCTCG 504 Query 738 AACGGGGAGATATTTTCTGTGAAAGATAGGAGGGCTAATGTTTCCACCATTTTCGAGACT 797 ||||||||||| ||||| || |||||||||||||||||||| || || ||||| ||||| Sbjct 505 AACGGGGAGATCTTTTCGGTTAAAGATAGGAGGGCTAATGTGTCGACTATTTTTGAGAC- 563 Query 798 CTT-GACAAAGTCTATAATC-TAGACTGGTTGAGTAGTGCCTCTAAGAACGAGTGCACTT 855 ||| |||||| | ||||| | |||| |||||||||||||| ||||||||||||||||| | Sbjct 564 CTTGGACAAATTGTATAA-CTTAGATTGGTTGAGTAGTGCTTCTAAGAACGAGTGCACCT 622 Query 856 CCGCTGTTGGCTTCAAGTGGATGCTTAATCAGGGTCTAATGAAACATCATGAAGAAATAG 915 | || ||||| || |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 623 CTGCCGTTGGATTGAAGTGGATGCTTAATCAGGGTCTAATGAAACACCATGAAGAGATAG 682 Query 916 TAGAATACTTCAAAACCCGAGGCGTCTCTGCGATTTTCCTATTCAGAAAAAACCTATTGC 975 ||||||||||||||||||||||||| ||||| |||||||| || |||| |||||| |||| Sbjct 683 TAGAATACTTCAAAACCCGAGGCGTGTCTGCTATTTTCCTCTTTAGAAGAAACCTCTTGC 742 Query 976 GCCGCATGATATCAGTACTCGCAAACTCTTATGACAGAGATGCTAAGCTACTAAACGGGA 1035 |||| ||||| ||||| || ||||||||||| || ||||||||||||| | ||||||| | Sbjct 743 GCCGGATGATTTCAGTTCTTGCAAACTCTTACGATAGAGATGCTAAGCCATTAAACGGTA 802 Query 1036 CTCACAAGTCTCACACCCATTCGGCC-AAAGAAGCTGAGATATTAGCAG-GTTACAAACC 1093 |||||||||| ||| |||||| || ||||| ||||||||||| || | | |||||||| Sbjct 803 CTCACAAGTCCCACGTCCATTCC-CCTAAAGAGGCTGAGATATTGGC-GCGCTACAAACC 860 Query 1094 AATGATCAACACAA-CACTTTTAATAAATGAGCTGA-GACAGATTCAAGAAATGACTTTG 1151 | |||||||||| | | ||||| ||| ||| |||| | ||| ||||||| ||||||| Sbjct 861 ATTGATCAACACGAGC-CTTTTGATACCTGATCTGAAG-CAGGTTCAAGAGATGACTTC- 917 Query 1152 AAAG-CT-TTGACTTACTTCAATACCACTCGACATATCCTTG-TCTACTACGAAGATGTT 1208 |||| | ||| ||||||| |||||||| || ||||| || ||||||||||||||||| Sbjct 918 AAAGGCACTTG-CTTACTTTAATACCACCCGGCATATT-TTCCTCTACTACGAAGATGTT 975 Query 1209 GTCAAGAACCTCACGAGACTAGACGATGTACAGGAGTTTCTAAAGGTACCAAAACGTA-A 1267 |||||||||| ||| | |||||| ||||| || |||||||||||||| || |||| | | Sbjct 976 GTCAAGAACCGCACTAAACTAGATGATGTGCAAGAGTTTCTAAAGGTCCCGAAAC-TCGA 1034 Query 1268 GTTAAAGAGTAGGCAAGTGAAGATTCATGGA-GGTTCATTGTCAAAACATGTACAGAATT 1326 ||||||||||||||||||||||||||| | ||| ||||||||||||| ||||| |||| Sbjct 1035 TTTAAAGAGTAGGCAAGTGAAGATTCATC-ATGGTCCATTGTCAAAACACGTACAAAATT 1093 Query 1327 GGGAAGAGGT-CATGACCACACTTAAAGGAACCAATTTCGAAAA-TTTCT 1374 |||||||||| || || ||||| ||||| ||| ||||||||| ||||| Sbjct 1094 GGGAAGAGGTGCAA-ACAACACTGAAAGGGACCGGTTTCGAAAACTTTCT 1142 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56792555295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5