BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34430.4
Length=3440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491219 jgi|Araly1|491219|fgenesh2_kg.7__652__AT4G34430.4 5173 0.0
> Ahg491219 jgi|Araly1|491219|fgenesh2_kg.7__652__AT4G34430.4
Length=3390
Score = 5173 bits (2801), Expect = 0.0
Identities = 3234/3435 (94%), Gaps = 61/3435 (2%)
Strand=Plus/Plus
Query 8 AAAAATGCAAAAACGGTGAAGGGGAAGAGAAGCGAAATTGGGGGATTGGGAATAGCAACG 67
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AAAAATGCAAAAACGGTGAAGGGGAAGAGAAGCGAAATT-GGGGATTGGGAATAGCAACG 59
Query 68 TTTTGCAAATGGTCTCTTCTTTGTAGCTGCAATTGCAAAGAACACTgagagagagagaga 127
||||||||||||||||| |||||||||||||||||| ||| || |||||||||| | |||
Sbjct 60 TTTTGCAAATGGTCTCTCCTTTGTAGCTGCAATTGCGAAG-ACGCTGAGAGAGA-A-AGA 116
Query 128 gTGTGTGTGTGACCTTTGAGAGATGGAGGAAAAACGACGCGATTCTGCTGGAACCCTAGC 187
| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 117 ------GAG-AACCTTTGAGAGATGGAGGAGAAACGACGCGATTCTGCTGGAACCCTAGC 169
Query 188 TTTTGCTGGTAGCTCTGGAGATTCTCCGGCATCTGAGCCGATGCCGGCGCCACGGCGACG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 TTTTGCTGGTAGCTCTGGAGATTCTCCGGCATCTGAGCCGATGCCGGCGCCACGGCGACG 229
Query 248 CGGCGGAGGTTTGAAAAGGAAAGCGAATGCTCTTGGGGGTTCTAATTTCTTC-TCTTCTG 306
|||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||
Sbjct 230 CGGCGGAGGTTTGAAAAGAAAAGCGAATGCTCTCGGGGGTTCTAATTTCT-CATCTTCTA 288
Query 307 CGCCGTCGAAGAGGATGTTGACGCGTGAGAAGGCGATGCTTGCTTCTTTTTCTCCGGTAC 366
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 289 CGCCGTCTAAGAGGATGTTGACGCGTGAAAAGGCGATGCTTGCGTCTTTTTCTCCGGTAC 348
Query 367 ATAATGGGCCTTTAACTAGAGCTCGTCAGGCGCCGAGTATTATGCCCTCGGCGGCGGATG 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 ATAATGGGCCTTTAACTAGAGCTCGTCAGGCGCCGAGTATTATGCCCTCGGCGGCGGATG 408
Query 427 GGGTTAAGTCGGAGGTTTTGAATGTAGCGGTGGGTGCGGATGGAGAGAAGCCCAAGGAGG 486
|||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 409 GGGTTAAGTCGGAGCTTTTGAATGTTGCGGTGGGTACGGATGGAGAGAAGCCCAAGGAGG 468
Query 487 AGGAAGAGAGGAATAAGGCGATCCGTGAGTGGGAGGCTTTGGAGGCTAAGATCGAAGCTG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGGAAGAGAGGAATAAGGCGATCCGTGAGTGGGAGGCTTTGGAGGCTAAGATCGAAGCTG 528
Query 547 ATTTTGAAGCAATTAGATCTCGTGACAGTAATGTTCATGTGGTGCCTAATCATTGCGGTT 606
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATTTCGAAGCAATTAGATCTCGTGACAGTAATGTTCATGTGGTGCCTAATCATTGCGGTT 588
Query 607 GGTTTTCATGGGAAAAAATTCACCCGCTTGAGGAACGTTCATTGCCCTCTTTCTTCAATG 666
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 589 GGTTTTCATGGGAAAAAATTCACCCGCTTGAGGAGCGTTCATTGCCCTCTTTCTTTAATG 648
Query 667 GCAAGTTGGAGGGTCGCACTTCTGAGGTATATAGGGAAATACGGAATTGGATCATGGGGA 726
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 649 GCAAGTTGGAAGGTCGCACTTCTGAGGTTTATAGGGAAATACGGAATTGGATCATGAGGA 708
Query 727 AGTTTCATTCCAATCCAAACATACAAATAGAATTAAAAGACTTAACAGAACTCGAGGTTG 786
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 709 AGTTTCATTCCAATCCGAACATACAAATAGAACTAAAAGACTTAACAGAACTCGAGGTTG 768
Query 787 GAGACTCGGAAGCAAAGCAAGAGGTGATGGAGTTCTTGGACTACTGGGGCTTAATCAATT 846
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 769 GAGACTCGGAGGCAAAGCAAGAGGTGATGGAGTTCTTGGATTACTGGGGCTTAATCAATT 828
Query 847 TCCACCCATTTCCACCAACAGATACTGGTTCAACAGCCT-CTGATCATGATGATTTAGGG 905
||||||||||||||||||||||| ||||||| || ||| ||||||||||||| | ||||
Sbjct 829 TCCACCCATTTCCACCAACAGATGCTGGTTCTACT-CCTTCTGATCATGATGACTCAGGG 887
Query 906 GATAAGGAGTCACTGCTTAACAGTTTATATCGATTTCAAGTAGATGAGGCTTGCCCTCCT 965
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 888 GATAAGGAGTCACTGCTTAACAGTTTATATCGATTTCAAGTTGATGAGGCTTGCCCTCCT 947
Query 966 CTTGTTCACAAGCCTCGTTTCACAGCACAAGCTACTCCATCAGGGTTGTTTCCTGATCCG 1025
||||||| |||||||||| |||||||||||||||| |||||||| |||||||| ||||||
Sbjct 948 CTTGTTCCCAAGCCTCGTCTCACAGCACAAGCTACACCATCAGGATTGTTTCCAGATCCG 1007
Query 1026 ATGGCTGCTGATGAATTGCTGAAACAAGAGGGTCCAGCGGTCGAATATCACTGCAATTCC 1085
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1008 GTGGCTGCTGATGAATTGCTGAAGCAAGAGGGTCCAGCGGTCGAATATCACTGCAATTCC 1067
Query 1086 TGTTCAGCTGATTGCTCTCGCAAGCGCTACCACTGCCCGAAACAGGCAGATTTTGACTTA 1145
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1068 TGTTCAGCTGATTGCTCTCGCAAACGCTACCACTGCCCGAAACAGGCAGATTTTGACTTA 1127
Query 1146 TGCACGGAATGCTTTAACAGTGGCAAGTTCAGCTCAGATATGTCATCTTCTGATTTTATA 1205
|||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1128 TGCACGGAATGCTTTAACAGCGGCAAGTTCAGTTCAGACATGTCATCATCTGATTTTATA 1187
Query 1206 CTAATGGAACCTGCTGAGGCCCCTGGCGTTGGTAGTGGGAAGTGGACTGATCAAGAGACT 1265
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CTAATGGAGCCTGCTGAGGCCCCTGGCGTTGGTAGTGGGAAGTGGACTGATCAAGAGACT 1247
Query 1266 CTTCTTCTCCTTGAAGCTTTAGAAATCTTCAAGGAAAATTGGAATGAGATTGCAGAGCAT 1325
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1248 CTTCTTCTCCTTGAAGCTTTAGAAATCTTCAAGGAAAACTGGAATGAGATTGCAGAGCAT 1307
Query 1326 GTTGCTACAAAAACAAAAGCTCAGTGTATGCTTCATTTTCTTCAAATGCCAATCGAGGAT 1385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1308 GTTGCTACAAAAACAAAAGCTCAGTGTATGCTTCATTTTCTTCAAATGCCAATCGAAGAT 1367
Query 1386 GCGTTTCTTGATCAAATTGACTACAAAGATCCAATCTCAAAAGACACTACAGATTTAGCT 1445
|| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1368 GCATTTCTTGATCAAATTGAATACAAAGATCCAAGCTCAAAAGACACTACAGATTTAGCT 1427
Query 1446 GTGTCTAAAGATGATAATTCTGTCCTTAAAG-ATGCACCTGAAGAGGCAGAGAACAAGAA 1504
|||| |||||| ||||| |||||||| |||| |||||||||||||||||||||| |||||
Sbjct 1428 GTGTTTAAAGAGGATAAATCTGTCCT-AAAGGATGCACCTGAAGAGGCAGAGAATAAGAA 1486
Query 1505 ACGTGTTGATGAAGATGAAACTATGAAAGAAGTTCCAGAACCAGAAGATGGCAATGAAGA 1564
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1487 ACGTGTTAATGAAGATGAAACTATGATGGAAGTTCCAGAACCAGAAGATGGCAATGAAGA 1546
Query 1565 AAAAGTCTCTCAGGAATCTTCAAAGCCTGGAGATGCGAGTGAAGAAACTAATGAAATGGA 1624
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 1547 AAAAGTCTCTCACGAATCTTCGAAGCCTGGAGATGCGAGTGAAGAAACCAATGAAGTGGA 1606
Query 1625 AGCAGAGCAGAAAACACCCAAGTTAGAGACCGCCATTGAAGAAAGATGTAAAGATGAGGC 1684
||||||||||||||||||||| ||||||| | |||||| ||||||| ||| ||||||||
Sbjct 1607 AGCAGAGCAGAAAACACCCAAACTAGAGACTGTCATTGATGAAAGATCTAATGATGAGGC 1666
Query 1685 TGACGAAAACATTGCTCTGAAAGCTCTTACTGAAGCTTTTGAGGATGTTGGACATTCCTC 1744
||| |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 1667 TGATGAAAACATTGCTCTGAAAGCTCTTGCTGAAGCTTTTGAAGATGTTGGTTATTCCTC 1726
Query 1745 CACACCTGAAGCCTCTTTTTCCTTTGCTGATTTAGGAAACCCTGTCATGGGACTGGCAGC 1804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 CACACCTGAAGCCTCTTTTTCCTTTGCTGATTTAGGAAACCCTGTCATGGGACTGGCAGC 1786
Query 1805 CTTTCTAGTGAGATTGGCAGGATCTGATGTTGCTACTGCGTCAGCTCGGGCTTCCATTAA 1864
||||| |||||||||||||||||||||||||||||||| ||||| |||||||| || ||
Sbjct 1787 ATTTCTGGTGAGATTGGCAGGATCTGATGTTGCTACTGCATCAGCCCGGGCTTCTATAAA 1846
Query 1865 ATCTCTTCACAGCAATTCTGGGA-TGTTGCTTGCCACACGACATTGTTATATTCTGGAAG 1923
||||||||||||||| ||||| | |||||||||| ||| |||||||||||||||||||||
Sbjct 1847 ATCTCTTCACAGCAAGTCTGG-ACTGTTGCTTGCTACAAGACATTGTTATATTCTGGAAG 1905
Query 1924 ATCCACCAGACAACAAGAAGGATCCAACTAAATCAAAAAGTTGCAGTGCTGATGCAGAGG 1983
||||||||||||||||||||||||||||| ||||||||||| || | | ||||| | |
Sbjct 1906 ATCCACCAGACAACAAGAAGGATCCAACTGAATCAAAAAGT-GC-G-G---ATGCAAATG 1959
Query 1984 GGAATGATGATAAT-TCCCATAAAGATGATCAGCCAGAAGaaaaaagcaaaaaaGCAGAA 2042
|||||||||||||| ||| ||||||| || |||||||||||||||||| |||||||||||
Sbjct 1960 GGAATGATGATAATGTCC-ATAAAGACGAGCAGCCAGAAGAAAAAAGCCAAAAAGCAGAA 2018
Query 2043 GAGGTCTCCTTAAATTCAGATGATAGGGAAATGCCAGATACTGATACAGGCAAAGAAACT 2102
||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2019 GAGGTTTCCTTGAATTCAGATGATAAGGAAATGCCAGATACTGATACAGGCAAAGAAAAT 2078
Query 2103 CAGGATTCAGTCTCTGAAGAAAAGCAACCCGGTTCTCGAACTGAAAATTCTACTACAAAA 2162
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2079 CAGGATTCAGTCTCTGAAGAAAAGCAACCTGGTTCTCGAACTGAAAATTCTACTACAAAA 2138
Query 2163 CTAGATG-CTGTGCAAGAAAAAAGATCTAGTAAGCCAGTTACAACTGACAATTCTGAGAA 2221
| ||||| | || |||||||||||||||||||||||| | |||||||||||||| | |||
Sbjct 2139 CCAGATGTC-GTACAAGAAAAAAGATCTAGTAAGCCAATAACAACTGACAATTCAGGGAA 2197
Query 2222 ACCAGTGGATATAATATGTCCGTCGCAGGACAAATGTTCAGGGAAGGAGCTTCAAGAACC 2281
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2198 ACCAGCGGATATAATATGTCCGTCGCAGGACAAATGTTCAGGGAAGGAGCTTCAAGAACC 2257
Query 2282 TTTGAAGGATGGGAATAAGCTTTCTAGTGAAAATAAAGACGCCTCTCA-GTCAACTGTCT 2340
|||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 2258 TTTGAAGGATGGGATTAAGCTTTCTAGTGAAAATAAAGACGCCTCTCAAG-CAACTGTCT 2316
Query 2341 CCCAGTCAGCTGCAGATGCTTCTCAGCCAGAAGCATCAAGAGATGTGGAAATGAAGGATA 2400
||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2317 CCCTGTCAGGTGAAGATGCTTCTCAGCCAAAAGCATCAAGAGATGTGGAAATGAAGGATA 2376
Query 2401 CT-CTACAGTCAGAGAAGGATCCTGAAGATGTGGTCAAAACAGTAGGAGAAAAGGTTCAA 2459
| |||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 2377 -TACTACAGGCAGAGAAGGATCCTCTAGATGTGGTCAAAACAGTAGAAGAGGAGGTTCAA 2435
Query 2460 CTGGCTAAGGAGGAGGGTGCAAATGATGTTCTTAGTACTCCAGACAAGTCTGTTTCACAG 2519
| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||
Sbjct 2436 CAGGCTAAGGAGGAGGGTGCAAAGGATGTTCTTAGTACTCCAGACATGTCACTTTCACAG 2495
Query 2520 CAGCCCATTGGATCAGCTTCTGCACCGGAAAATGGAACAGCTGGTGGAAATCCAAATATA 2579
|||||||||||||||||||||||||||||||||||||||| | || ||||| ||||| |
Sbjct 2496 CAGCCCATTGGATCAGCTTCTGCACCGGAAAATGGAACAG--G-TGAAAATCAAAATAAA 2552
Query 2580 GAAGGAAAGAAAGAGAAGGATATTTGTGAAGGGACAAAAGACAAATATAACATCGAGAAG 2639
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2553 GAAGGAAAGAAAGAGAAGGATGTTTGTGAAGGGACAAAAGACAAACATAACATCGAGAAG 2612
Query 2640 CTTAAGCGCGCAGCCATCTCTGCTATCTCAGCCGCAGCAGTAAAAGCAAAGAATCTTGCA 2699
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2613 CTTAAGCGCGCAGCCATCTCTGCTATCTCAGCTGCAGCAGTAAAGGCAAAGAATCTTGCA 2672
Query 2700 AAGCAAGAAGAAGATCAAATCCGACAACTTTCGGGATCATTGATAGAGAAGCAGCAGCTA 2759
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 2673 AAGCAAGAAGAAGATCAAATCCGACAACTTTCTGGATCATTGATAGAGAAGCAGCAGTTA 2732
Query 2760 CATAAACTAGAAGCAAAGCTATCTATCTTCAATGAAGCTGAAAGCTTGACAATGAGGGTA 2819
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2733 CATAAGCTAGAAGCAAAGCTATCTATCTTCAATGAAGCTGAAAGCTTGACAATGAGGGTA 2792
Query 2820 AGAGAGCAATTAGAAAGGTCAAGGCAACGGCTATATCATGAAAGGGCTCAGATCATAGCA 2879
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2793 AGAGAGCAATTGGAAAGGTCAAGGCAACGGCTATATCATGAAAGGGCTCAGATCATAGCA 2852
Query 2880 GCTCGACTAGGTGTCCCACCTTCAATGTCCTCAAAAGCATCGTTACCAACAAACAGAATC 2939
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2853 GCTCGACTAGGTGTCCCCCCTTCAATGTCCTCAAAAGCATCGTTACCAACAAACAGAATC 2912
Query 2940 GCTGCAAATTTTGCTAATGTAGCTCAAAGGCCTCCAATGGGCATGGCCTTTCCACGCCCA 2999
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2913 GCTGCAAATTTTGCTAATGTAGCTCCAAGGCCTCCCATGGGCATGGCCTTTCCACGCCCA 2972
Query 3000 CCAATGCCAAGGCCCCCAGGTTTCCCTGTTCCTGGTTCTTTTGTAGCTGCTACAACAATG 3059
|||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 2973 CCAATGCCAAGGCCTCCAGGTTTCTCTGTTCCTGGTTCTTATGTAGCTGCTACAACAATG 3032
Query 3060 ACCGGAAGTTCAGATCCATCTCCAGGTTCAGACAATGTTTCTTCGGTTTAGTGGTCCCAC 3119
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 3033 ACCGGAAGCTCAGATCCATCTCCAGGTTCAGACAATGTGTCTTCGGTTTAGTAGTCCCAC 3092
Query 3120 ATTATAGTGTTAAGATTTGCA-GGGTAGCTCTTCGTGATGTTCTCTATTTATAAGCCAAG 3178
||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 3093 ATTATAGTGTTCAGATTTGCGCGGGTAGCTCTTCTTGATGTTCT--ATTTATAAGCCAAG 3150
Query 3179 GTACA---TTATCCCACCTTTTGCGGCTTCAACCTTTGAGCTTGGTTTCTTTTCTGAAGA 3235
||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 3151 GTACAACATTATCCCACCTTTTGCGGCTTCAACCTT-GAGCTTG------------A--- 3194
Query 3236 TTTATCGGAATTATGTAGGAGACGGTGATATGGGGAAGTTAGTTAGGGGTTTTAGACCCA 3295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3195 TTTATCGGAATTATGTAGGAGACGGTGATATGGGGAAGTTAGTTAGGGGTTTTAGACCCA 3254
Query 3296 TCGATTAATGTTTAATGTAACTGTCAAATGAAACTTTCGGAGATCTGTGAATGTGTTTTT 3355
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3255 TCGATTAATGTTTAATGTAACTGTCAAATGAAACTTTTGGAGATCTGTGAATGTGTTTT- 3313
Query 3356 ATGGTTCTTTCAACTTTAATGAATTGTAACGTTGA-C-GAGAGATATATGATTCCGCAAA 3413
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 3314 ATGGTTCTTTGAACTTTAATGAATTGTAACGTTGAACAGAGAGATATATGATTCCGCAAA 3373
Query 3414 AGGTGGGAATGTCTT 3428
|||||||||||||||
Sbjct 3374 AGGTGGGAATGTCTT 3388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129890496649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5