BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34440.1
Length=2317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888624 jgi|Araly1|888624|Al_scaffold_0007_610 3110 0.0
Ahg927733 jgi|Araly1|927733|scaffold_300190.1 846 0.0
Ahg340394 jgi|Araly1|340394|fgenesh1_pg.C_scaffold_3000157 723 0.0
Ahg944491 jgi|Araly1|944491|scaffold_700720.1 368 1e-100
Ahg918637 jgi|Araly1|918637|Al_scaffold_0310_2 335 1e-90
> Ahg888624 jgi|Araly1|888624|Al_scaffold_0007_610
Length=2010
Score = 3110 bits (1684), Expect = 0.0
Identities = 1912/2021 (95%), Gaps = 19/2021 (1%)
Strand=Plus/Plus
Query 97 ATGGCGGACTCACCGGTGGATTCATCTCCTGCCCCTGAAACCTCAAATGGGACACCACCG 156
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCGGACTCGCCGGTGGATTCACCTCCTGCCCCTGAAACCTCAAATGGGACACCGCCC 60
Query 157 TCAAACGGAACATCGCCGTCTAATGAGTCATCGCCGCCAACACCACCTTCTTCACCACCA 216
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAAACGGGACATCGCCGTCGAATGAGTCATCGCCGCCAACACCACCTTCTTCACCACCA 120
Query 217 CCATCATCAATATCTGCTCCTCCGCCAGATATCTCCGCTTCTTTTTCACCGCCGCCTGCA 276
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 121 CCATCATCAAAATCTGCTCCTCCGCCAGATAGCTCCGCTTCTTCTTCACCGCCGCCTGCA 180
Query 277 CCACCAACGCAAGAAACGTCACCTCCTACATCTCCGTCCTCATCGCCGCCTGTTGTAGCT 336
||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||
Sbjct 181 CCACCAACGCAAGAAACCTCACCTCCTCCATCTTCGTCCTCATCCCCGCCTGTTGTAGCT 240
Query 337 AATCCGTCACCGCAGACTCCAGAGAATCCTTCTCCACCTGCACCTGAAGGCTCAACTCCT 396
|||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 AATCCGCCACCGCAAACTCCAGAGAATCCTTCTCCACCTGCACCTGAAGGCTTTACTCCG 300
Query 397 GTAACGCCACCTGCACCACCACAAACACCGTCGAACCAATCACCG------GAAAGACCA 450
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GTAACGCCACCGGCACCACCACAAACACCGTCGAACCAATCACCGCCTTTAGAAAGACCA 360
Query 451 ACTCCTCCTTCTCCTGGTGCCAATGATGACCGAAACAGAACCAATGGCGGAAACAACAAC 510
|||||||||||||||||||||||||||||||| |||||||||||| || || |||
Sbjct 361 ACTCCTCCTTCTCCTGGTGCCAATGATGACCGTAACAGAACCAAT---GG---TAATAAC 414
Query 511 AGAGACGGCTCCACACCATCACCACCGTCGTCAGGGAACAGAACTTCCGGTGACGGTGGC 570
||||| || |||||||| |||||||||| ||| |||||||||||||||||||| ||| ||
Sbjct 415 AGAGATGGTTCCACACCTTCACCACCGTTGTCTGGGAACAGAACTTCCGGTGATGGTAGC 474
Query 571 TCACCTTCACCACCTCGGTCGATAAGCCCTCCTCAGAATAGTGGAGATTCAGACTCATCA 630
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 475 TCACCTTCACCACCTCGGTCAATAAGCCCTCCTCGGAATAGTGGAGATTCAGACTCATCA 534
Query 631 TCGGGTAATCATCCACAAGCCAACATTGGATTGATTATTGGAGTCCTTGTAGGAGCAGGG 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCGGGTAATCATCCACAAGCCAACATTGGATTGATTATTGGAGTCCTTGTAGGAGCAGGG 594
Query 691 CTTTTGCTTCTACTTGC-AGTGTGTATTTGCATCTGTTGCAACAGGAAGAAGAAGAAGAA 749
||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| ||
Sbjct 595 CTTTTGCTTCTACTT-CTAGTGTGTATTTGCATCTGTTGCAACAAGAAGAAGAAGAAAAA 653
Query 750 ATCTCCTCAGGTCAACCACATGCACTACTACAATAACAATCCTTATGGAGGAGCACCCTC 809
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 654 ATCTCCTCAGGTCAACCACATGCACTACTACAATAACAATCCTTATGGTG---CACCCTC 710
Query 810 AGGTAATGGTGGTTATTACAAGGGAACACCTCAAGATCATGTGGTGAATATGGCTGGTCA 869
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 711 AGGTAATGGTGGTTATTACAAGGCAACACCTCAGGATCATGTGGTGAATATGGCTGGTCA 770
Query 870 AGGAGGTGGGAATTGGGGTCCACAGCAACCTGTGTCTGGTCCTCACAGTGATGCTTCCAA 929
||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 771 AGGAGGTGGAAATTGGGGTCCACAGCAACCTGTGTCCGGTCCTCACAGTGACACTTCCAA 830
Query 930 CTTAACCGGTCGAACTGCTATACCGTCACCTCAAGCTGCAACTCTTGGTCACAACCAAAG 989
|||||| |||||||| |||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 831 CTTAACTGGTCGAACAGCTACACCCTCACCTCAAGCTGCGACTCTTGGTCACAACCAAAG 890
Query 990 CACTTTCACATACGATGAACTGTCCATTGCAACAGAAGGTTTCGCTCAGTCAAATTTGCT 1049
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 891 CACTTTCACCTACGATGAATTGTCCATTGCAACAGAAGGTTTCGCTCAGTCAAATTTGTT 950
Query 1050 AGGACAAGGAGGATTTGGGTATGTTCATAAAGGAGTTCTGCCTAGTGGCAAAGAAGTTGC 1109
||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 951 AGGGCAAGGAGGATTTGGGTATGTTCATAAAGGAGTTTTGCCTGGTGGCAAAGAAGTTGC 1010
Query 1110 AGTGAAGAGTCTTAAACTTGGAAGTGGACAAGGGGAACGCGAGTTTCAAGCAGAGGTTGA 1169
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1011 AGTGAAGAGTCTTAAACTTGGAAGCGGACAAGGTGAACGCGAGTTTCAAGCAGAGGTTGA 1070
Query 1170 TATCATTAGCCGTGTCCATCATCGTCATCTCGTTTCTCTTGTTGGATATTGCATCTCTGG 1229
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1071 TATCATTAGCCGTGTCCATCATCGTCATCTCGTATCTCTTGTTGGATATTGCATTTCTGG 1130
Query 1230 TGGTCAAAGACTTTTGGTTTATGAGTTTATACCTAACAACACTCTTGAATTTCATCTTCA 1289
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1131 TGGTCAAAGGCTTTTGGTTTATGAGTTTATACCTAATAACACTCTTGAATTTCATCTTCA 1190
Query 1290 TGGAAAGGGTCGTCCGGTTTTGGATTGGCCTACAAGAGTGAAGATTGCATTGGGATCAGC 1349
|||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1191 CGGAAAGGGTCGTCCGGTTCTGGATTGGCCTACACGAGTCAAGATTGCATTGGGATCAGC 1250
Query 1350 TAGAGGCCTTGCATATTTGCATGAAGACTGTCACCCTCGCATTATCCACAGAGATATCAA 1409
|||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||
Sbjct 1251 TAGAGGTCTTGCATATTTGCATGAAGACTGCCATCCTCGCATTATCCATAGAGATATTAA 1310
Query 1410 AGCTGCAAACATTCTTCTTGATTTCAGTTTTGAGACCAAGGTGGCAGATTTTGGATTGGC 1469
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1311 AGCTGCAAACATTCTTCTTGATTTCAGTTTTGAAACCAAGGTTGCAGATTTTGGATTAGC 1370
Query 1470 TAAGCTATCTCAAGACAACTATACTCATGTCTCCACTCGCGTCATGGGAACTTTTGGATA 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TAAGCTATCTCAAGACAACTATACTCATGTCTCCACTCGCGTCATGGGAACTTTTGGATA 1430
Query 1530 CTTAGCTCCAGAGTATGCATCAAGCGGAAAGTTATCCGACAAATCTGATGTTTTCTCATT 1589
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1431 CTTAGCTCCAGAGTATGCATCAAGTGGAAAGTTATCCGACAAATCTGATGTTTTCTCATT 1490
Query 1590 TGGAGTAATGCTTCTTGAGCTCATAACCGGAAGACCTCCTCTGGATCTAACTGGAGAAAT 1649
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1491 TGGAGTAATGCTTCTTGAGCTCATAACCGGACGACCTCCTCTGGATCTAACTGGAGAAAT 1550
Query 1650 GGAAGATAGCTTGGTAGATTGGGCAAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGAGA 1709
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 GGAAGACAGCTTGGTAGACTGGGCAAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGAGA 1610
Query 1710 TTACAACCAATTGGCTGATCCACGTCTAGAGCTAAACTACAGTCATCAAGAGATGGTTCA 1769
||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1611 TTACAGCCAATTGGCAGATCCGCGTCTAGAGCTAAACTACAATCATCAAGAGATGGTTCA 1670
Query 1770 AATGGCTTCTTGTGCAGCTGCAGCAATCAGACATTCAGCAAGAAGACGGCCTAAGATGAG 1829
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1671 AATGGCTTCTTGTGCAGCTGCAGCAATCAGACACTCAGCAAGAAGACGACCTAAGATGAG 1730
Query 1830 CCAGATTGTACGAGCACTAGAAGGAGATATGTCAATGGATGATCTAAGTGAGGGAACAAG 1889
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1731 CCAGATTGTACGAGCACTAGAAGGAGATATGTCAATGGAGGATCTAAGTGAAGGAACAAG 1790
Query 1890 ACCAGGACAAAGCACGTACTTGAGCCCCGGGAGCGTGAGCTCAGAGTATGACGCAAGCTC 1949
|||||||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||
Sbjct 1791 ACCAGGACAAAGCACGTATTTGAGCCCCGGAAGTGTGAGCTCGGAGTATGATGCAAGCTC 1850
Query 1950 GTACACG-GCAGACATGAAAAAGTTCAAGAAACTGGCGTTAGAGAATAAAGAATATCAAA 2008
|||| | |||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1851 TTACA-GTGCAGACATGAAAAAATTCAAGAAATTGGCGTTAGAGAATAAAGAATATCAAA 1909
Query 2009 GCAGTGAATATGGTGGAACAAGTGAGTATGGCTTAAACCCTTCTGCTTCAAGTAGTGAAG 2068
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1910 GCAGTGAATATGGTGGAACAAGTGAGTATGGCTTAAATCCTTCTGCTTCAAGTAGTGAAG 1969
Query 2069 AAATGAATAGAGGCTCAATGAAACGCAATCCTCAGCTTTGA 2109
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 AAATGAATAGAGGCTCAATGAAACGCAATCCTCAGCTTTGA 2010
> Ahg927733 jgi|Araly1|927733|scaffold_300190.1
Length=618
Score = 846 bits (458), Expect = 0.0
Identities = 514/541 (95%), Gaps = 3/541 (1%)
Strand=Plus/Plus
Query 1555 GGAAAGTTATCCGACAAATCTGATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATA 1614
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 80 GGAAAGTTATCCGACAAATCCGATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATA 139
Query 1615 ACCGGA-AGACCTCCTCTGGATCTAACTGGAGAAATGGAAGATAGCTTGGTAGATTGGGC 1673
|||||| | |||||| ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 140 ACCGGACA-ACCTCCAGTGGATCTAACTGGAGAAATGGAATATAGCTTGGTAGACTGGGC 198
Query 1674 AAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGAGATTACAACCAATTGGCTGATCCACG 1733
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 199 AAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGTGATTACAACCAATTGGCAGATCTGCG 258
Query 1734 TCTAGAGCTAAACTACAGTCATCAAGAGATGGTTCAAATGGCTTCTTGTGCAGCTGCAGC 1793
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TCTAGAGCTAAACTACAATCATCAAGAGATGGTTCAAATGGCTTCTTGTGCAGCTGCAGC 318
Query 1794 AATCAGACATTCAGCAAGAAGACGGCCTAAGATGAGCCAGATTGTACGAGCACTAGAAGG 1853
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 AATCAGACACTCAACAAGAAGACGGCCTAAGATGAGCCAGATTGTACGAGCACTAGAAGG 378
Query 1854 AGATATGTCAATGGATGATCTAAGTGAGGGAACAAGACCAGGACAAAGCACGTACTTGAG 1913
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 379 AGATATGTCAATGGATGATCTAAGTGAAGGAACAAGACCAGGACAAAGCAAGTATTTGAG 438
Query 1914 CCCCGGGAGCGTGAGCTCAGAGTATGACGCAAGCTCGTACACGGCAGACATGAAAAAGTT 1973
||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| ||
Sbjct 439 GCCCGGAAGCGTGAGCTCAGAGTATAACGCAAGCTCGTACACCGCAGACATGAAAAAATT 498
Query 1974 CAAGAAACTGGCGTTAGAGAATAAAGAATATCAAAGCAGTGAATATGGTGGAACAAGTGA 2033
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CAAGAAATTGGCGTTAGAGAATAAAGAATATCAAAGCAGTGAATATGGTGGAACAAGTGA 558
Query 2034 GTATGGCTTAAACCCTTCTGCTTCAAGTAGTGAAGAAATGAATAGAGGCTCAATGAAACG 2093
|||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 559 GTATGGTTTAAATCCT-CTGCTTCAAGTAGTGAAGAAATGAATAGAGGTTCAATGAAACG 617
Query 2094 C 2094
|
Sbjct 618 C 618
> Ahg340394 jgi|Araly1|340394|fgenesh1_pg.C_scaffold_3000157
Length=1059
Score = 723 bits (391), Expect = 0.0
Identities = 443/468 (95%), Gaps = 3/468 (1%)
Strand=Plus/Plus
Query 1608 GCTCATAACCGGA-AGACCTCCTCTGGATCTAACTGGAGAAATGGAAGATAGCTTGGTAG 1666
||||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 594 GCTCATAACCGGACA-ACCTCCAGTGGATCTAACTGGAGAAATGGAATATAGCTTGGTAG 652
Query 1667 ATTGGGCAAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGAGATTACAACCAATTGGCTG 1726
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 653 ACTGGGCAAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGTGATTACAACCAATTGGCAG 712
Query 1727 ATCCACGTCTAGAGCTAAACTACAGTCATCAAGAGATGGTTCAAATGGCTTCTTGTGCAG 1786
|||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 713 ATCCGCGTCTAGAGCTAAACTACAATCATCCAGAGATGGTTCAAATGGCTTCTTGTGCAG 772
Query 1787 CTGCAGCAATCAGACATTCAGCAAGAAGACGGCCTAAGATGAGCCAGATTGTACGAGCAC 1846
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 773 CTGCAGCAATCAGACACTCAACAAGAAGACGGCCTAAGATGAGCCAGATTGTACGAGCAC 832
Query 1847 TAGAAGGAGATATGTCAATGGATGATCTAAGTGAGGGAACAAGACCAGGACAAAGCACGT 1906
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 833 TAGAAGGAGATATGTCAATGGATGATCTAAGTGAAGGAACAAGACCAGGACAAAGCAAGT 892
Query 1907 ACTTGAGCCCCGGGAGCGTGAGCTCAGAGTATGACGCAAGCTCGTACACGGCAGACATGA 1966
| ||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 893 ATTTGAGGCCCGGAAGCGTGAGCTCAGAGTATAACGCAAGCTCGTACACCGCAGACATGA 952
Query 1967 AAAAGTTCAAGAAACTGGCGTTAGAGAATAAAGAATATCAAAGCAGTGAATATGGTGGAA 2026
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AAAAATTCAAGAAATTGGCGTTAGAGAATAAAGAATATCAAAGCAGTGAATATGGTGGAA 1012
Query 2027 CAAGTGAGTATGGCTTAAACCCTTCTGCTTCAAGTAGTGAAGAAATGA 2074
||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 1013 CAAGTGAGTATGGTTTAAATCCT-CTGCTTCAAGTAGTGAAGAAATGA 1059
> Ahg944491 jgi|Araly1|944491|scaffold_700720.1
Length=742
Score = 368 bits (199), Expect = 1e-100
Identities = 228/242 (94%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 1761 GATGGTTCAAATGGCTTCTTGTGCAGCTGCAGCAATCAGACATTCAGCAAGAAGACGGCC 1820
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 452 GATGGTTCAAATGGCTTCTTGTGCAGCTGCAGCAATCAGACACTCAGCAAGAAGACGGCC 511
Query 1821 TAAGATGAGCCAGATTGTACGAGCACTAGAAGGAGATATGTCAATGGATGATCTAAGTGA 1880
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 512 TAAGATGAGCCAGATTGTACGAGCACTAGAAGGAGATATGTCAATGGAGGATCTAAGTGA 571
Query 1881 GGGAACAAGACCAGGACAAAGCACGTACTTGAGCCCCGGGAGCGTGAGCTCAGAGTATGA 1940
||||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||
Sbjct 572 AGGAACAAGACCGGGACAAAGCACCTATTTGAGCCCCGGAAGCGTGAGCTCGGAGTATGA 631
Query 1941 CGCAAGCTCGTACACG-GCAGACATGAAAAAGTTCAAGAAACTGGCGTTAGAGAATAAAG 1999
|||||||| |||| | |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 632 TGCAAGCTCTTACA-GTGCAGACATGAAAAAATTCAAGAAATTGGCGTTAGAGAATAAAG 690
Query 2000 AA 2001
||
Sbjct 691 AA 692
Score = 331 bits (179), Expect = 1e-89
Identities = 203/215 (94%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 1457 ATTTTGGATTGGCTAAGCTATCTCAAGACAACTATACTCATGTCTCCACTCGCGTCATGG 1516
|||||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 238 ATTTTGGATTAGCTAAGTTATCTCAAGACAACTATACTCATGTCTCTACTCGAGTCATGG 297
Query 1517 GAACTTTTGGATACTTAGCTCCAGAGTATGCATCAAGCGGAAAGTTATCCGACAAATCTG 1576
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 298 GAACTTTTGGATACTTAGCTCCAGAGTATGCTTCAAGTGGAAAGTTATCCGACAAATCTG 357
Query 1577 ATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATAACCGGAAGACCTCCTCTGGATC 1636
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 358 ATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATAACCGGACGACCTCATGTGGATC 417
Query 1637 TAACTGGAGAAATGGAAGATAGCTTGGTAGATTGG 1671
||||||||||||||||||| |||||||| || |||
Sbjct 418 TAACTGGAGAAATGGAAGACAGCTTGGTCGACTGG 452
Score = 231 bits (125), Expect = 1e-59
Identities = 174/195 (89%), Gaps = 13/195 (7%)
Strand=Plus/Plus
Query 984 CCAAAGCACTTTCACATACGATGAACTGTCCATTGCAACAGAAGG-TTTCGCTCAGTCAA 1042
||||||||||||||| ||||||||| |||| |||||||||||||| |||| |||||||||
Sbjct 1 CCAAAGCACTTTCACGTACGATGAATTGTCTATTGCAACAGAAGGTTTTCACTCAGTCAA 60
Query 1043 ATTTGCTAGGACAAGGAGGATTTGGGTATGTTCATAAAGGAGTTCTGCCTAGTGGCAAAG 1102
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 61 ATTTGCTAGGACAAGGACGATTTGGGTATGTTCATAAAGGAGTTTTGCCTTGTGGCAAAG 120
Query 1103 AAGTTGCAGTGAAGAGTCTTAAACTTGGAAGTGGACAAGGGGAACGCGAGTTTCAAGCAG 1162
|||||||||||||||||||||||| ||| | | ||||||||||||||||||
Sbjct 121 AAGTTGCAGTGAAGAGTCTTAAAC----AAG-GT----G---AACGCGAGTTTCAAGCAG 168
Query 1163 AGGTTGATATCATTA 1177
|||||||||||||||
Sbjct 169 AGGTTGATATCATTA 183
> Ahg918637 jgi|Araly1|918637|Al_scaffold_0310_2
Length=819
Score = 335 bits (181), Expect = 1e-90
Identities = 207/220 (94%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 1457 ATTTTGGATTGGCTAAGCTATCTCAAGACAACTATACTCATGTCTCCACTCGCGTCATGG 1516
|||||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 218 ATTTTGGATTAGCTAAGTTATCTCAAGACAACTATACTCATGTCTCTACTCGAGTCATGG 277
Query 1517 GAACTTTTGGATACTTAGCTCCAGAGTATGCATCAAGCGGAAAGTTATCCGACAAATCTG 1576
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 278 GAACTTTTGGATACTTAGCTCCAGAGTATGCTTCAAGTGGAAAGTTATCCGACAAATCTG 337
Query 1577 ATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATAACCGGAAGACCTCCTCTGGATC 1636
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 338 ATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATAACCGGACGACCTCATGTGGATC 397
Query 1637 TAACTGGAGAAATGGAAGATAGCTTGGTAGATTGGGCAAG 1676
||||||||||||||||||| |||||||| || |||| |||
Sbjct 398 TAACTGGAGAAATGGAAGACAGCTTGGTCGACTGGGTAAG 437
Score = 329 bits (178), Expect = 5e-89
Identities = 248/280 (89%), Gaps = 11/280 (4%)
Strand=Plus/Plus
Query 1834 ATTGTACGAGCACTAGAAGGAGATATGTCAATGGATGATCTAAGTGAGGGAACAAGACCA 1893
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 547 ATTGTACGAGCACTAGAAGGAGATATGTCAATGGAGGATCTAAGTGAAGGAACAAGACCG 606
Query 1894 GGACAAAGCACGTACTTGAGCCCCGGGAGCGTGAGCTCAGAGTATGACGCAAGCTCGTAC 1953
||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||| |||
Sbjct 607 GGACAAAGCACCTATTTGAGCCCCGGAAGCGTGAGCTCGGAGTATGATGCAAGCTCTTAC 666
Query 1954 ACG-GCAGACATGAAAAAGTTCAAGAAACTGGCGTTAGAGAATAAAGAATATCAAAG-CA 2011
| | |||||||||||||| ||||||||| |||||||||||||||||||| | ||| ||
Sbjct 667 A-GTGCAGACATGAAAAAATTCAAGAAATTGGCGTTAGAGAATAAAGAA-A--AAATTCA 722
Query 2012 GTGAATAT-GGTGGAACA-AGTGAGTATGGCTTAAACCCTTCTGCTTCAAGTAGTGAAGA 2069
||| || || | | | | ||||||||||||||| ||||||||||||||||| |||||
Sbjct 723 A-GAA-ATTGGCGTTAGAGA-TGAGTATGGCTTAAATCCTTCTGCTTCAAGTAGAGAAGA 779
Query 2070 AATGAATAGAGGCTCAATGAAACGCAATCCTCAGCTTTGA 2109
|||||||||||| |||||||||||||||||| ||||||||
Sbjct 780 AATGAATAGAGGTTCAATGAAACGCAATCCTAAGCTTTGA 819
Score = 159 bits (86), Expect = 6e-38
Identities = 124/140 (89%), Gaps = 12/140 (9%)
Strand=Plus/Plus
Query 1038 GTCAAATTTGCTAGGACAAGGAGGATTTGGGTATGTTCATAAAGGAGTTCTGCCTAGTGG 1097
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 3 GTCAAATTTGCTAGGACAAGGACGATTTGGGTATGTTCATAAAGGAGTTTTGCCTTGTGG 62
Query 1098 CAAAGAAGTTGCAGTGAAGAGTCTTAAACTTGGAAGTGGACAAGGGGAACGCGAGTTTCA 1157
||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct 63 CAAAGAAGTTGCAGTGAAGAGTCTTAAAC----AAG-GT----G---AACGCGAGTTTCA 110
Query 1158 AGCAGAGGTTGATATCATTA 1177
||||||||||||||||||||
Sbjct 111 AGCAGAGGTTGATATCATTA 130
Score = 82.4 bits (44), Expect = 1e-14
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 1787 CTGCAGCAATCAGACATTCAGCAAGAAGACGGCCTAAGATGAGCCAG 1833
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Sbjct 467 CTGCAGCAATCAGACACTCAGCAAGAAGACGGCCTAAGATGAGCCAG 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87264751295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5