BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34460.1
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491213 jgi|Araly1|491213|fgenesh2_kg.7__646__AT4G34460.1 2357 0.0
> Ahg491213 jgi|Araly1|491213|fgenesh2_kg.7__646__AT4G34460.1
Length=1588
Score = 2357 bits (1276), Expect = 0.0
Identities = 1480/1570 (94%), Gaps = 48/1570 (3%)
Strand=Plus/Plus
Query 15 tctctAGCTAGTCTCAGGTCAGAGAAGCCATCATCAACATTCAACAAGAGAGCCGTGTTT 74
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTATCTAGTCTCAGGTCAGAG-AGCCATCATCAACATTCAACAAGAGAGCCGTGTTT 59
Query 75 G--TGTCT-TGACTGATTCTTC-TCTCAAGCTTTTTTAATCTCTCTCTCTTTTCCCACGT 130
| ||| | ||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 60 GTTTGTGTCTGACTGATTCTTCTTCTCAAG------------CTC-CTCTTTTCCCACGT 106
Query 131 AATTCCCCCAAATCCAT-TCTTTCTAGGGTTCGATCTCCCTCTCTCAATCATGAACCTTC 189
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 107 AATTCCCCCAAATCC-TCTCTTTCTAGGGTTCGATCTCCATCTCTCAATCATGAACCTTC 165
Query 190 TTCTCTTCTAGACCCCACAAAGTTTCCCCCTTTTATTTGATCGGCGACGGAGAAGCCTAA 249
|||||||||||| ||| |||||||||||| |||| |||||||||||||||||||||||||
Sbjct 166 TTCTCTTCTAGA-CCCGCAAAGTTTCCCCTTTTTCTTTGATCGGCGACGGAGAAGCCTAA 224
Query 250 GTCTGATCCCGGAATGTCTGTCTCCGAGCTCAAAGAACGCCACGCCGTCGCTACGGAGAC 309
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 225 GTCTGATCCCGGAATGTCTGTCTCCGAGCTCAAAGAACGTCACGCCGTCGCTACGGAGAC 284
Query 310 CGTTAATAACCTCCGTGACCAGCTTAGACAGAGACGCCTCCAGCTCCTCGATACCGATGT 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CGTTAATAACCTCCGTGACCAGCTTAGACAGAGACGCCTCCAGCTCCTCGATACCGATGT 344
Query 370 GGCGAGGTATTCAGCGGCGCAAGGACGTACTCGGGTGAGCTTCGGAGCAACGGATCTGGT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GGCGAGGTATTCAGCGGCGCAAGGACGTACTCGGGTGAGCTTCGGAGCAACGGATCTGGT 404
Query 430 TTGTTGTCGTACTCTTCAGGGACACACCGGAAAGGTTTATTCATTAGATTGGACACCGGA 489
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 405 TTGTTGTCGTACTCTTCAGGGACACACCGGAAAGGTTTATTCATTGGATTGGACACCGGA 464
Query 490 GAGGAACCGGATTGTCAGTGCATCTCAAGATGGGAGATTAATCGTGTGGAATGCTCTAAC 549
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GAGGAACCGTATTGTCAGCGCATCTCAAGATGGGAGATTAATCGTGTGGAATGCTCTAAC 524
Query 550 GAGTCAGAAAACTCATGCTATTAAACTCCCTTGTGCATGGGTTATGACATGTGCTTTCTC 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GAGTCAGAAAACTCATGCTATTAAACTCCCTTGTGCATGGGTTATGACATGTGCTTTCTC 584
Query 610 TCCAAATGGTCAGTCGGTTGCGTGTGGTGGATTAGACAGTGTATGTTCTATCTTTAGCCT 669
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 585 TCCAAATGGTCAGTCGGTTGCGTGTGGTGGATTAGACAGTGTGTGTTCTATCTTCAGCCT 644
Query 670 TAGCTCAACGGCGGACAAGGATGGAACTGTACCGGTTTCAAGAATGCTCACTGGTCACAG 729
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 645 TAGCTCAACCGCGGACAAGGACGGAACTGTACCGGTTTCAAGAATGCTCACTGGTCACAG 704
Query 730 GGGATATGTTTCGTGCTGTCAGTATGTCCCAAATGAGGATGCCCACCTTATCACCAGTTC 789
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 705 GGGATATGTTTCGTGCTGTCAGTATGTCCCAAACGAGGATGCCCACCTTATCACCAGTTC 764
Query 790 AGGTGATCAAACTTGTATCTTATGGGATGTAACTACTGGTCTCAAAACTTCTGTTTTTGG 849
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 765 AGGTGATCAAACTTGTATCTTATGGGATGTGACTACTGGCCTCAAAACTTCAGTTTTTGG 824
Query 850 CGGTGAATTTCAGTCTGGACATACTGCTGATGTACTAAGCGTCTCAATCAGTGGATCAAA 909
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 825 TGGTGAATTTCAGTCTGGACATACTGCTGATGTACTAAGTGTCTCAATCAGTGGATCAAA 884
Query 910 CCCAAACTGGTTTATATCTGGTTCATGCGATTCCACAGCACGGTTGTGGGACACTCGTGC 969
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 885 CCCAAATTGGTTCATATCTGGTTCATGTGATTCCACAGCACGGTTGTGGGACACTCGTGC 944
Query 970 TGCAAGCCGAGCAGTGCGTACCTTTCATGGTCACGAGGGAGATGTTAATACGGTCAAGTT 1029
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 945 TGCAAGCCGAGCAGTGCGTACCTTTCATGGGCACGAGGGAGATGTTAATACGGTCAAGTT 1004
Query 1030 CTTTCCGGATGGGTATAGATTTGGGACTGGATCAGACGATGGAACATGCAGGCTGTATGA 1089
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1005 CTTTCCGGATGGGTATAGATTTGGGACTGGATCAGACGATGGCACATGCAGGTTGTATGA 1064
Query 1090 CATAAGGACTGGTCACCAACTCCAGGTCTATCAGCCACATGGTGATGGTGAGAACGGACC 1149
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1065 CATAAGGACTGGTCACCAACTCCAGGTCTATCAGCCACATGGTGATGGTGAGAACGTACC 1124
Query 1150 TGTCACCTCCATTGCATTCTCTGTGTCAGGGAGACTTCTTTTCGCTGGCTATGCGAGCAA 1209
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1125 TGTCACCTCCATTGCATTCTCTGTCTCAGGGAGACTTCTTTTCGCTGGCTATGCCAGCAA 1184
Query 1210 CAACACTTGCTACGTTTGGGATACCCTCTTGGGAGAGGTTGTATTGGATTTGGGATTACA 1269
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1185 CAACACTTGCTACGTTTGGGATACTCTTTTGGGAGAGGTTGTATTGGATTTGGGATTACA 1244
Query 1270 GCAGGATTCACACAGGAATAGAATAAGCTGTTTGGGGTTGTCAGCAGATGGAAGTGCCTT 1329
|||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1245 GCAGGATTCACACAAGAATCGGATAAGCTGTTTGGGGTTGTCAGCAGATGGAAGTGCCTT 1304
Query 1330 GTGTACAGGAAGTTGGGATTCAAATCTAAAGATATGGGCGTTTGGAGGACACAGGAGAGT 1389
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1305 GTGTACAGGAAGTTGGGATTCAAATCTAAAGATATGGGCGTTTGGAGGGCACAGGAGAGT 1364
Query 1390 GATTTGAAGAAGATTTAACGAAA-GTAGGAGTCACGTCTCCAGTTGT--TGGT--T---- 1440
||||||||||||||| ||| ||| |||||||||| |||||||||||| |||| |
Sbjct 1365 GATTTGAAGAAGATT-AAC-AAACGTAGGAGTCATGTCTCCAGTTGTGGTGGTGGTTGGT 1422
Query 1441 -AATATATTCTGTAGTCGGGAAGTAAGGTTCG-GTT-TGTGGAAG---G-----TGTTTG 1489
||||||||||||| | |||||||||||| || | | |||||||| | ||||||
Sbjct 1423 TAATATATTCTGTAATTGGGAAGTAAGGT-CGCGATATGTGGAAGAACGGAAGGTGTTTG 1481
Query 1490 GTTTGAAATAGTGGAGTGGTTAGAAGAATTAAACTTCCCTTTTTGT-A-GTGTG--CTTT 1545
|||||||||||||||||||||||||| || ||||||||||| |||| | ||||| ||||
Sbjct 1482 GTTTGAAATAGTGGAGTGGTTAGAAGGATCAAACTTCCCTTGTTGTTAAGTGTGTGCTTT 1541
Query 1546 GATTTATTTA 1555
||||||||||
Sbjct 1542 GATTTATTTA 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63115535965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5