BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34480.1
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491210 jgi|Araly1|491210|fgenesh2_kg.7__643__AT4G34480.1 1759 0.0
Ahg480794 jgi|Araly1|480794|fgenesh2_kg.3__3495__AT2G16230.1 776 0.0
Ahg494762 jgi|Araly1|494762|fgenesh2_kg.8__578__AT5G42720.1 174 2e-42
> Ahg491210 jgi|Araly1|491210|fgenesh2_kg.7__643__AT4G34480.1
Length=1137
Score = 1759 bits (952), Expect = 0.0
Identities = 1029/1067 (96%), Gaps = 2/1067 (0%)
Strand=Plus/Plus
Query 1 ACCATCAATGGctctctccatctccatctatttcctcctcatcttcctctctcacttccc 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 ACCATCAATGGCTCTCTCCATCTCCATCTCTCTCCTCCTCATCTTCCTCTCTCACTTCCC 60
Query 61 atcctcACATGCAGAGCCTTTCATCGGAGTTAACTACGGCCAAGTCGCCGACAATCTCCC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCTCACATGCAGAGCCTTTCATCGGAGTTAACTACGGCCAAGTCGCCGACAATCTCCC 120
Query 121 TCCGCCTTCAGAAACCGTCAAGCTCCTCCAATCCACTTCAATTCAGAAAGTTCGACTTTA 180
||| ||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||
Sbjct 121 TCCTCCTTCAGAAACCGCCAAGCTCCTCCAATCCACTTCTATCCAGAAAGTTCGACTCTA 180
Query 181 CGGCGCCGATCCCGCCATCATCAAAGCTTTGGCCGGAACAGGGGTCGGTATCGTCATCGG 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 181 CGGCGCCGATCCCGCCATCATCAAAGCTTTGGCCGGAACAGGGGTTGGTATCGTCATAGG 240
Query 241 CGCTGCTAACGGCGACGTTCCTTCTCTTGCCTCCGATCCTAACGCCGCTACTCAATGGAT 300
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 241 CGCTGCTAACGGCGACGTTCCTTCTCTCGCCTCCGATCCCAACGCCGCCACTCAATGGAT 300
Query 301 CAACTCCAATGTCCTTCCTTTTTATCCCGCCTCCAAAATCATGCTCATCACCGTCGGCAA 360
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 301 CAACTCCAATGTCCTTCCTTTTTATCCCGCTTCCAAAATCATCCTCATCACCGTCGGCAA 360
Query 361 CGAGATTCTGATGTCGAACGATCCAAATCTGGTGAACCAGCTACTTCCGGCGATGCAAAA 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 CGAGATTCTGATGTCGAACGATCCAAATCTGGTGAATCAGCTACTTCCGGCGATGCAAAA 420
Query 421 TGTCCAAAAAGCCCTTGAGGCGGTGTCTCTCGGCGGGAAAATCAAGGTCTCGACGGTGAA 480
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 421 TGTCCAAAAAGCCCTTGAGGCGGTGTCTCTCGGCGGGAAAATCATGGTCTCGACGGTGCA 480
Query 481 CTCGATGACGGTGCTCGGTAGTTCAGACCCGCCATCGAGCGGTTCATTTGCGGCCGGTTA 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 CTCGATGACGGTGCTCGGTAGTTCAGACCCGCCATCGACCGGTTCATTTGCGGCCGGTTA 540
Query 541 TCAAACCGGTTTAAAGGGAATTTTGCAATTTCTAAGCGACACTGGTTCGCCTTTTGCTAT 600
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 TCAAACCGGTTTAAAAGGAATTTTGCAATTTCTAAGCGACACTGGTTCACCTTTTGCTAT 600
Query 601 TAACCCGTACCCGTTCTTCGCGTACCAAAGTGACCCGAGACCCGAAACGCTGGCGTTTTG 660
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 601 TAATCCGTACCCGTTCTTCGCGTACCAAAGTGATCCGAGACCCGAAACGCTGTCGTTTTG 660
Query 661 TCTCTTT-GAGCCTAACGCCGGACGAGTCGACTCCAAAACCGGAATCAAATACACGAACA 719
|| ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 661 CCT-TTTCCAGCCTAACGCCGGACGGGTCGACTCCAAAACCGGAATCAAGTACACGAACA 719
Query 720 TGTTCGATGCTCAGGTTGATGCGGTTCACTCGGCTTTGAAATCGATGGGATTCGAGAAGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 TGTTCGATGCTCAGGTTGATGCGGTTCACTCGGCTTTGAAATCGATGGGATTCGAAAAGG 779
Query 780 TGGAGATTGTGGTGGCGGAAACAGGTTGGGCGTCAAGAGGGGACGCTAACGAGGTTGGAG 839
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGAGATCGTGGTGGCGGAAACAGGTTGGGCGTCAAGAGGGGACGCTAACGAGGTTGGAG 839
Query 840 CAAGCGTGGATAACGCCAAAGCGTACAACGGAAACCTAATAGCTCATCTAAGGTCTATGG 899
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 CAAGCGTGGATAACGCCAAAGCTTACAACGGAAACCTAATAGCTCATCTAAGGTCTATGG 899
Query 900 TTGGCACACCTCTCATGCCTGGAAAACCTGTTGACACTTACATTTTCGCACTGTATGATG 959
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 TTGGCACACCTCTCATGCCTGGAAAACCTGTTGACACTTACCTTTTCGCACTGTATGATG 959
Query 960 AGAATCTAAAGCCTGGACCATCTTCAGAACGGGCTTTCGGGCTTTTCAAAACTGATCTTT 1019
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGAATCTAAAGCCTGGACCTTCTTCAGAACGGGCTTTCGGGCTTTTCAAAACTGATCTTT 1019
Query 1020 CCATGGTCTATGATGTTGGCCTTGCCAAGAGTAGCAGCAGTAGTCAG 1066
|||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1020 CCATGGTCTACGATGTAGGCCTTGCCAAGAGTAGCAGTAGTAGTCAG 1066
> Ahg480794 jgi|Araly1|480794|fgenesh2_kg.3__3495__AT2G16230.1
Length=1359
Score = 776 bits (420), Expect = 0.0
Identities = 1057/1359 (78%), Gaps = 66/1359 (5%)
Strand=Plus/Plus
Query 8 ATGGctctctccatctccatctatttcctcctc-atcttcctctctcacttcccatcctc 66
|||||||||||||||| | || | ||||| || || || ||||| ||| | | ||
Sbjct 1 ATGGCTCTCTCCATCTTCTTCCCTCTCCTCTTCGTTC-TCTTCTCT-GTTTCGC--CGTC 56
Query 67 ACATGCAGAG-CCTTTCATCGGAGTTAACTACGGCCAAGTCGCCGACAATCTCCCTCCGC 125
| ||||| || | ||| |||||||| ||||||||| | | |||||||| ||||| || |
Sbjct 57 AAATGCACAGTCGTTT-ATCGGAGTAAACTACGGCTTACTAGCCGACAACCTCCCACCAC 115
Query 126 CTTCAGAAACCGTCAAGCTCCTCCAATCCACTTCAATTC-AGAAAGTTCGACTTTACGGC 184
| || ||||| | ||| ||||| ||||| || || | || ||||||| | || |||
Sbjct 116 CGTCCGAAACGGCCAAACTCCTTCAATCTACCTCCA-TCGAGAAAGTGAGGCTATACAAT 174
Query 185 GCCGATCCCGCCATCATCAAAGCTTTGGCCGGAACAGGGGTCGGTATCGTCATCGGCGCT 244
||||||||| ||||||||||| | ||||| || || | |||| || || ||||| | |
Sbjct 175 GCCGATCCCTCCATCATCAAATCCTTGGCAGGCACCGACATCGGCATTGTTATCGGAG-T 233
Query 245 -GCTAACGGCGA-CGTTCCTTCTCTTGCCTCCGA-TCCTAACGCCGCTACTCAATGGATC 301
|| || ||||| | | || ||| | ||||| || | | || | |||| |||| |||||
Sbjct 234 AGCCAATGGCGATC-TCCCGTCTATGGCCTCTGATTTC-AATGTCGCTTCTCAGTGGATA 291
Query 302 AACTCCAATGTCCTTCCTTTTTATCCCGCCTCCAAAATCATGCTCATCACCGTCGGCAAC 361
|| ||||| || |||||||| ||||| |||||||| ||||| ||||||| |||||||||
Sbjct 292 AATTCCAACGTACTTCCTTTCTATCCTGCCTCCAACATCATTCTCATCAATGTCGGCAAC 351
Query 362 GAGAT-TCTGATGTCGAACGATCC-AAATCTGGTGAACCAGCTACTTCCGGCGATGCAAA 419
||| | | || |||| || || || ||||| |||||||| || || |||||||||||||
Sbjct 352 GAGGTGT-TGTTGTCTAATGA-CCTGAATCTAGTGAACCAACTTCTCCCGGCGATGCAAA 409
Query 420 ATGTCCAAAAAGCCCTTGAGGCGGTGTCTCTCGGCGGGAAAATCAAGGTCTCGACGGTGA 479
|||| ||||| ||||| |||||||| || || ||| | ||||||||||| || |||||
Sbjct 410 ATGTTCAAAAGGCCCTCGAGGCGGTTTCACTAGGCAGAAAAATCAAGGTGTCTACGGTCC 469
Query 480 ACT-CGATGACGGTGCTCGGTAGTTCAGACCCGCCATCGAGC-GGTTCATTTGCGGCC-G 536
| | | ||||||||||| || | || || |||||||| ||| ||||||||||| ||
Sbjct 470 A-TGCAATGACGGTGCTAGGCAACTCCGAACCGCCATC-AGCTGGTTCATTTGC-TCCTA 526
Query 537 GTTATCAAACCGGTTTAAAGGGAATTTTGCAATTTCTAAGCGACACTG-GTTCGCCTTTT 595
||||||| | ||||||||||| ||| | || || || ||||| |||| | |||||||||
Sbjct 527 GTTATCAGGCTGGTTTAAAGGGCATTCTACAGTTCCTTAGCGATACTGAG-TCGCCTTTT 585
Query 596 GCTATTAACCCGTACCCGTTCTTCGCGTACCAAAGTGACCCGAGACCCGAAACGCTGGCG 655
|| || ||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 586 GCCATCAACCCGTACCCGTTCTTTGCGTACCAGAGCGACCCGAGACCCGAAACGCTGGCG 645
Query 656 TTTTGTCTCTTTG-AGCCTAACGCC-GGACGAGTCGACTCCAAAACCGGAATCAAATACA 713
|||||||| ||| |||||||| || ||||| || |||||||| || |||||||| ||||
Sbjct 646 TTTTGTCT-TTTCCAGCCTAAC-CCTGGACGGGTAGACTCCAACACTGGAATCAAGTACA 703
Query 714 CGAACATGTTCGATGCTCAGGTTGATGCGGTTCACTCGGCTTTGAAATCGATGGGATTCG 773
||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 704 TGAACATGTTCGATGCTCAGGTTGATGCAGTACACTCAGCTTTGAAATCGATGGGATTCG 763
Query 774 AGAAGGTGGAGATTGT-GGTGGCGGAAACAGGTTGGGCGTCAAGAGGGGACG-CTAACGA 831
|||| || || | ||| ||| || |||||||||||| | || | || ||| | |||||
Sbjct 764 AGAAAGTAGA-AGTGTTGGTAGCCGAAACAGGTTGGCCATCTACCGGTGACAAC-AACGA 821
Query 832 GGTTGGAGCAAGCGTGGATAACGCCAAAGCGTACAACGGAAACCTAATAGCTCATCT-AA 890
||| || |||| || || || || || || ||||| ||||| || || ||||| || ||
Sbjct 822 GGTAGGTCCAAGTGTTGAGAATGCTAAGGCTTACAATGGAAATCTCATTGCTCA-CTTAA 880
Query 891 GGTCTATGGTTGGCACACCTCTCATGCCTGGAAAA-CCTGTTGACACTTACATTTTCGCA 949
|||| ||||||||||| || |||||||| || ||| || | |||||||||||||||||
Sbjct 881 GGTCCATGGTTGGCACTCCGCTCATGCCCGGCAAATCCA-TCGACACTTACATTTTCGCT 939
Query 950 CTGTATGATGAGAATCTAAAGCCTGGACCATC-TTCAGAACGGGCTTTCGGGCTTTTCAA 1008
|| | ||| |||||||| |||||||| || || || || || |||| || ||||||||
Sbjct 940 CTCTTTGACGAGAATCTCAAGCCTGGTCCTTCCTTT-GAGCGATCTTTTGGCCTTTTCAA 998
Query 1009 AACTGATCTTTCCATGGTCTATGATGTTGGCCTTGCCAAGAGTAGC-AGCAGT-AG--T- 1063
||||||||||||||| ||| || |||| || | || | || | || ||| || |
Sbjct 999 GCCTGATCTTTCCATGGCCTACGACATTGGACTCACTAAAACTA-CTAGTAGTCAGACTT 1057
Query 1064 CAGA--CACCATCAG--G--AAAAGTGACATCG-TCGGGGTGGTGTGTACCAAAGAAGGG 1116
|| | | ||| ||| | ||||| ||||| | ||| |||||||| |||||| |||
Sbjct 1058 CACAATCTCCA-CAGTTGGGAAAAGCAACATCCAT-GGGATGGTGTGTGCCAAAGGAGGA 1115
Query 1117 TGCAACG-AATGAGGAGTTACAAGCGAG-CTTGGATTGGGCGTGCGGACATGGAATAGAC 1174
||| || || ||| |||| |||| || || | |||||| || || || ||||| ||
Sbjct 1116 TGCGACTCAA-GAGCAGTTGCAAGATAGTCTAG-ATTGGGTTTGTGGGCAGGGAATCGAT 1173
Query 1175 TGTGGTGCGATACAA-CCAGGAGGGGCTTGTTTCGAGCCGAACAATGTGGTCTCTCACGC 1233
||||| | ||| | |||||||||| |||||||||||| |||||| | |||||||| |
Sbjct 1174 TGTGGCCCAATA-ATGCCAGGAGGGGTTTGTTTCGAGCCTAACAATCTTGTCTCTCATAC 1232
Query 1234 AGCATATGCCATGAATATGTATTTTCAGAAATCTCCT-AAGCAGCCTACAGACTGCGATT 1292
||||||||| ||| || | ||||| || ||||||||| ||| | ||||| || |||||||
Sbjct 1233 AGCATATGCTATGGATCTTTATTTCCAAAAATCTCCTGAAG-ACCCTACGGATTGCGATT 1291
Query 1293 TCTCTAAAACCGCAAC-AGTCACTTCCCAAAACCCTAGT 1330
|||||||| |||| | | ||||||| | |||||||||
Sbjct 1292 TCTCTAAAGCCGCGAGGA-TCACTTCTGAGAACCCTAGT 1329
> Ahg494762 jgi|Araly1|494762|fgenesh2_kg.8__578__AT5G42720.1
Length=1706
Score = 174 bits (94), Expect = 2e-42
Identities = 477/652 (73%), Gaps = 65/652 (10%)
Strand=Plus/Plus
Query 407 CCGGCGATGCAAAATGTCCAAAAAGCCCTTGAGGCGGTGTCTC-T--CGGCGGGAAAATC 463
||||| ||| |||||||||||| || |||||||||||||||| | |||||||||||
Sbjct 741 CCGGCAATGAAAAATGTCCAAAGTGCTCTTGAGGCGGTGTCTCTTGGTGGCGGGAAAATT 800
Query 464 AAGGTCTCGACGGTGAAC-TCG--ATGACGGTGCTCGG-TAGTTCAGACCCGCCATC-G- 517
|||||||||||||| || | | ||| | || || || | |||||||| || || |
Sbjct 801 AAGGTCTCGACGGT--ACAT-GTAATGTCAGTTCT-GGCCGGGTCAGACCCTCCTTCGGC 856
Query 518 AGCGGTTCATTTGCGGCCGGTTATCAAACCG--GT-TT-AAAGGGAATTTTGC-A-A-TT 570
|||| | |||| |||| | || | | | || ||| || | |||| | | ||
Sbjct 857 CGCGG-T-ATTT-AAACCGG--AGCATGCTGATATATTGAAA-GG-A--TTGCTAGAGTT 907
Query 571 TCTA-AGCGACACTGGTTCGCCTTTTGCTATTAACCCGTACCCGTTCTTCGCGTACCAAA 629
| | || || || || |||||||| || |||| ||||||||||| ||||| |||| |
Sbjct 908 T-AATAGTGAAACCGGGTCGCCTTTCGCGGTTAATCCGTACCCGTTTTTCGCTTACC-AG 965
Query 630 G-TGACCCGAGACCCGAAACGCTGGCGTTTTGTC-TCTTTGAGCCTAACGCC-GGACGAG 686
| ||||| ||||||||||||| |||| | ||| | | ||| ||||||| || || || |
Sbjct 966 GATGACCGGAGACCCGAAACGTTGGCCTATTG-CTTGTTTCAGCCTAA-TCCTGGCCGTG 1023
Query 687 TCGACTCCAAAACCGGAA--TCAAATACACGAACATGTTCGATGCTCAGGTTGATGCGGT 744
||||| |||| | | || |||| || | ||||||||||||||||||||||||||||||
Sbjct 1024 TCGACCCCAAGA--GCAACCTCAAGTATATGAACATGTTCGATGCTCAGGTTGATGCGGT 1081
Query 745 -TCACTCGGCTTTGAAATCGATGGGATTCGAGAAGGTG--GAGATTGTGGTGGCGGAAAC 801
| | || |||||||| |||||||| ||| | ||| || ||||| ||||| || || ||
Sbjct 1082 GT-ATTCAGCTTTGAACTCGATGGGGTTC-A-AAGATGTAGAGATAGTGGTCGCTGAGAC 1138
Query 802 AGGTTGGGCGT-CAAGAGGGGACGCTA-ACGAGGTTGGAGCAAGC-GTGGATAACGCCAA 858
|| ||| ||| |||| || ||| | | | |||| ||| |||| | || || ||||| |
Sbjct 1139 TGGGTGGCCGTACAAG-GGCGACCC-AGAGGAGGCTGGTGCAA-CAGTTGAGAACGCTAG 1195
Query 859 AGCGTACAACGGAAACCTAATAGCTCATCT-AAGGTCTATGGTT-GGCACACCTCTCATG 916
||| ||||| |||||| || |||||| | || ||| ||| || || || || |||
Sbjct 1196 AGCTTACAATAAAAACCTCATTGCTCATTTGAAA-TCTG-GGTCCGGGACGCCACTGATG 1253
Query 917 CCTGGAAAACCTGTT-GACACTTACATT-TTCGCACTGTATGATGAGAATCTAAAGCCTG 974
|| || | | || | || || ||| || |||||| |||| || |||||||| ||||| |
Sbjct 1254 CCCGGGAGAG-TGATCGATACATAC-TTGTTCGCATTGTACGACGAGAATCTCAAGCCCG 1311
Query 975 G-ACCATCTTCAGAACGGGCTTTCGGGCT-TTTCAAAACTGATCTTTCCATG 1024
| | | ||| ||||| || ||||| | ||| | | ||||||| |||||
Sbjct 1312 GGAA-AGGTTCTGAACGAGCCTTCGGTTTGTTT-AGACCTGATCTGACCATG 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65096228705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5