BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34490.1
Length=1859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944453 jgi|Araly1|944453|scaffold_700682.1 2468 0.0
Ahg951114 jgi|Araly1|951114|scaffold_803001.1 54.7 2e-06
Ahg946804 jgi|Araly1|946804|scaffold_703033.1 54.7 2e-06
Ahg942051 jgi|Araly1|942051|scaffold_602595.1 54.7 2e-06
Ahg922221 jgi|Araly1|922221|scaffold_103502.1 54.7 2e-06
Ahg922027 jgi|Araly1|922027|scaffold_103308.1 54.7 2e-06
> Ahg944453 jgi|Araly1|944453|scaffold_700682.1
Length=1477
Score = 2468 bits (1336), Expect = 0.0
Identities = 1429/1473 (97%), Gaps = 9/1473 (1%)
Strand=Plus/Plus
Query 45 CTTTTGTTGATCGAAAAAATGGAAGAGGATTTGATTAAGCGCCTTGAAGCTGCGGTTACG 104
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CTTTTGCTGATCG-AAAAATGGAAGAGGATTTGATTAAGCGCCTTGAAGCTGCGGTTACG 62
Query 105 AGGCTTGAGGGGATCTCAAGCAAC---GGAGGAGGAGTAGTTTCTCTTTCCCGCGGAGGA 161
|||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 63 AGGCTTGAAGGGATCTCAAGCAACGGAGGAGGAGGAGTTGTTTCTCTTTCCCGCGGAGGA 122
Query 162 GATTTCTCCTCCGCCGCCGGAATCGATATCGCGTCGTCCGATCCATCGATTCTGGCTTAT 221
||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 123 GATTTCTCCTCCGGCGCCGGAACCGATGTCGCGTCGTCCGATCCATCGATTCTGGCTTAT 182
Query 222 GAAGATCTGATTTCTCAATGTGTTGGTAGGGCTCTGACCGCCGCTGAGAAAATCGGTGGA 281
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 183 GAAGATCTGATTTCTCAATGCGTTGGTAGGGCTCTGACCGCGGCTGAGAAAATCGGTGGA 242
Query 282 CCTGTTCTAGATGTGACTAAGATAGTCGCCGAAGCTTTTGCTTCCCAAAAGGAGCTGCTT 341
|||||| |||||||||| ||||| |||||||||||||||||||| || ||||||||||||
Sbjct 243 CCTGTTTTAGATGTGACGAAGATTGTCGCCGAAGCTTTTGCTTCGCAGAAGGAGCTGCTT 302
Query 342 GTTCGCATCAAGCAAACTCAGAAGCCTGACCTCGCTGGATTGGCTGGATTTCTCAAA-CC 400
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 303 GTTCGCATCAAGCAAACTCAGAAGCCTGACCTCGCTGGATTGGCTGGATTTCT-AAAGCC 361
Query 401 GTTGAATGATGTTACAATGAAAGCTAATGCAATGACTGAAGGAAAAAGGTCGGATTTTTT 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GTTGAATGATGTTACAATGAAAGCTAATGCAATGACTGAAGGAAAAAGGTCGGATTTTTT 421
Query 461 CAATCACTTGAAGGCTGCATGCGATAGTTTATCTGCATTGGCTTGGATTGCTTTCACTGG 520
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 422 CAATCACTTGAAGGCTGCATCCGATAGTTTATCTGCATTGGCTTGGATTGCTTTCACTGG 481
Query 521 GAAAGATTGTGGTATGAGCATGCCAATAGCTCATGTGGAAGAAAGTTGGCAAATGGCTGA 580
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CAAAGATTGTGGTATGAGTATGCCAATAGCTCATGTGGAAGAAAGTTGGCAAATGGCTGA 541
Query 581 GTTTTACAACAATAAGGTTCTGGTGGAGTATCGTAACAAAGACGCAGATCATGTGGAGTG 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 542 ATTTTACAACAATAAGGTTCTGGTGGAGTATCGTAACAAAGACGCAGATCATGTGGAATG 601
Query 641 GGCTAAAGCCTTAAAAGAACTTTATTTACCTGGTTTAAGGGAATATGTCAAAAGTCATTA 700
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 602 GGCTAAAGCCTTAAAAGAACTTTACTTACCTGGTTTAAGGGAATATGTCAAAAGTCATTA 661
Query 701 CCCCTTGGGACCTGTATGGAATGCATCAGGGAAACCTGCTAGTGCTCCTGCAAAGGGTCC 760
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 662 CCCCTTGGGACCTGTATGGAATGCATCAGGGAAACCTGCTAGTGCTCCTGCAAAGGCTCC 721
Query 761 ACCTGGTGCTCCTGC---TCCTCCACCAGCACCCCTCTTCAGTGCTGAATCTTCAAAGCC 817
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 722 ACCTGGTGCTCCTGCAAAGGCTCCACCAGCACCCCTCTTCAGTTCTGAATCTTCAAAGCC 781
Query 818 ATCATCATCGTCAAACCAGAAACAAGGGATGTCTGCTGTTTTCCAGCAACTCAGCTCGGG 877
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 782 ATCATCATCGTCAAACCAGAAACAAGGGATGTCTGCTGTTTTCCAGCAGCTCAGCTCGGG 841
Query 878 TGCTGTGACCTCAGGTCTTAGAAAAGTGACGGATGATATGAAGACAAAGAACCGTGCTGA 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TGCTGTGACCTCAGGTCTTAGAAAAGTGACGGATGATATGAAGACAAAGAACCGTGCTGA 901
Query 938 TAGATCTGGAGCTGTTAGTGCGGTTGAGAAGGAAACTCGTACCAGTAAACCGGCCTTTTC 997
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 902 TAGATCTGGAGCTGTTAGTGCCGTTGAGAAGGAAACACGAACCAGTAAACCGGCCTTTTC 961
Query 998 GAAAACTGGACCACCGAAAATGGAACTTCAAATGGGTCGCAAGTGGGCTGTTGAGAACCA 1057
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GAAAACTGGACCACCGAAGATGGAACTTCAAATGGGTCGCAAGTGGGCTGTTGAGAACCA 1021
Query 1058 AATTGGGAAGAAGGACTTGGTTATCAGCGAGTGTGATTCCAAACAGTCTGTGTACATATA 1117
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1022 AATTGGGAAGAAGGACTTGGTTATAAGCGAGTGTGATTCCAAACAGTCTGTGTACATATA 1081
Query 1118 TGGTTGCAAAGATTCTGTCTTGCAAATACAAGGAAAAGTGAATAACATCACCATTGACAA 1177
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1082 TGGTTGCAAAGATTCTGTCTTGCAGATACAAGGAAAAGTGAATAACATCACCATTGACAA 1141
Query 1178 ATGCACGAAAGTGGGTGTTGTTTTCACGGATGTTGTTGCTGCATTTGAGATTGTGAATTG 1237
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 ATGCACCAAAATGGGTGTTGTTTTCACGGATGTTGTTGCTGCATTTGAGATTGTGAATTG 1201
Query 1238 CAACAACGTAGAAGTGCAATGTCAGGGTTCAGCTCCCACAGTTTCTGTGGACAACACAAC 1297
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 CACCAACGTAGAAGTGCAATGTCAGGGTTCAGCTCCCACAGTTTCTGTGGACAACACAAC 1261
Query 1298 TGGCTGTCAGTTATATCTAAACAAAGACTCATTAGAGACAGCTATAACAACAGCCAAATC 1357
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1262 TGGCTGTCAGTTATATCTAAACAAAGACTCATTAGAAACAGCTATAACAACAGCCAAATC 1321
Query 1358 AAGTGAGATCAATGTAATGGTGCCCGGTGCTACCCCTGATGGAGATTGGGTGGAACATGC 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 AAGTGAGATCAATGTAATGGTGCCCGGTGCTACCCCTGATGGAGATTGGGTGGAACATGC 1381
Query 1418 GCTGCCTCAACAGTACAATCATGTGTTTACTGAAGGGAAGTTTGAGACAACACCGGTCTC 1477
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 GCTGCCCCAACAGTACAATCATGTGTTTACTGAAGGGAAGTTTGAGACAACACCGGTCTC 1441
Query 1478 GCATTCAGGTGCCTAAGCAAAGGAGAAACTATT 1510
|||||||||||||||||||||||||||||||||
Sbjct 1442 GCATTCAGGTGCCTAAGCAAAGGAGAAACTATT 1474
> Ahg951114 jgi|Araly1|951114|scaffold_803001.1
Length=346
Score = 54.7 bits (29), Expect = 2e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 330 AAGGAGCTGCTTGTTCGCATCAAGCAAACTCA 361
||| ||||||||||||||||||||||||||||
Sbjct 108 AAGAAGCTGCTTGTTCGCATCAAGCAAACTCA 139
> Ahg946804 jgi|Araly1|946804|scaffold_703033.1
Length=346
Score = 54.7 bits (29), Expect = 2e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 330 AAGGAGCTGCTTGTTCGCATCAAGCAAACTCA 361
||| ||||||||||||||||||||||||||||
Sbjct 108 AAGAAGCTGCTTGTTCGCATCAAGCAAACTCA 139
> Ahg942051 jgi|Araly1|942051|scaffold_602595.1
Length=539
Score = 54.7 bits (29), Expect = 2e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 330 AAGGAGCTGCTTGTTCGCATCAAGCAAACTCA 361
||| ||||||||||||||||||||||||||||
Sbjct 262 AAGAAGCTGCTTGTTCGCATCAAGCAAACTCA 293
> Ahg922221 jgi|Araly1|922221|scaffold_103502.1
Length=346
Score = 54.7 bits (29), Expect = 2e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 330 AAGGAGCTGCTTGTTCGCATCAAGCAAACTCA 361
||| ||||||||||||||||||||||||||||
Sbjct 108 AAGAAGCTGCTTGTTCGCATCAAGCAAACTCA 139
> Ahg922027 jgi|Araly1|922027|scaffold_103308.1
Length=385
Score = 54.7 bits (29), Expect = 2e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 330 AAGGAGCTGCTTGTTCGCATCAAGCAAACTCA 361
||| ||||||||||||||||||||||||||||
Sbjct 108 AAGAAGCTGCTTGTTCGCATCAAGCAAACTCA 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69819419085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5