BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34500.1
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491208 jgi|Araly1|491208|fgenesh2_kg.7__641__AT4G34500.1 2442 0.0
> Ahg491208 jgi|Araly1|491208|fgenesh2_kg.7__641__AT4G34500.1
Length=1633
Score = 2442 bits (1322), Expect = 0.0
Identities = 1504/1588 (95%), Gaps = 28/1588 (2%)
Strand=Plus/Plus
Query 142 TTTCTCTACTCCGTGAT--CGCGATGTCGGACTCTGGT---GGTGGTTCTCACAAGTCCT 196
|||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTTCTCTACT-CGTG-TCACGCGATGTCGGACTCTGGTGGGGGTGGTTCTCACAAGTCCT 118
Query 197 CCACAACAAAACCTTCCGTTTTCGGACTAAACCTTTACTTAGTCATCGCGATTTGTTCTG 256
||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 119 CCACAACAAAATCTTCCATTTTCGGACTAAACCTCTACTTAGTCATCGCGATTTGTTCTG 178
Query 257 TTTTCATACTCTTGATCTCACTCTTGATCTTCCTCTTCGTCTGCTTGAATCGCGTCTCAC 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTTTCATACTCTTGATCTCACTCTTGATCTTCCTCTTCGTCTGCTTGAATCGCGTCTCAC 238
Query 317 GCGCTCGTAGAATGCGCGTTAAACACAGCTCCGGCTCGATCCCGCTCGTCTCTAAAGAAA 376
||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 GCGCTCGTAAAATGCGCGTGAAACACAGCTCCGGCTCGATCCCTCTCGTCTCTAAAGAAA 298
Query 377 TCTCGGAGATCAAGACGGTCGGCAAATTCATAAACTCCGACGATTCCAAGGGTAAAATCG 436
|||||||||||||||| ||||| ||||| || |||||||| ||||||||||||||||| |
Sbjct 299 TCTCGGAGATCAAGACTGTCGGAAAATTTATTAACTCCGATGATTCCAAGGGTAAAATGG 358
Query 437 GAAACGAAGTTGTTGTTGTTGTCTCCGCCACAAGCAAAGAAGCGACAAGTGGTTTTGATA 496
||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 359 GAAACGAAGTTGTTGTTGTTGTCTCCGCCTCAAGCAAAGAAGCGACGAGTGGGTTTGATA 418
Query 497 CTTTGTCGGTGGCTTCGAGCGGTGACGTTGGTACTTCTGAGGCAATGGGATGGGGAAAAT 556
|||||||||||||||| |||||||||||||| | ||||||| |||||||||||||| ||
Sbjct 419 CTTTGTCGGTGGCTTCAAGCGGTGACGTTGG--C-TCTGAGGTAATGGGATGGGGAAGAT 475
Query 557 GGTACAGCTTGAAAGATCTGGAGATTGCGACACGTGGCTTCTCTGATGATAACATGATCG 616
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 476 GGTACAGCTTAAAAGATCTGGAGATTGCGACACGTGGCTTCTCCGATGAAAACATGATCG 535
Query 617 GTGAAGGAGGGTACGGTGTCGTTTACAGAGCTGATTTCTCTGACGGTTCTGTCGCCGCCG 676
|||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 536 GTGAAGGAGGCTACGGTGTTGTTTATAGAGCTGATTTCTCCGACGGTTCTGTCGCCGCCG 595
Query 677 TCAAGAATCTCCTTAACAACAAGGGTCAGGCGGAGAAGGAGTTCAAAGTTGAAGTAGAAG 736
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 596 TCAAGAATCTCCTTAACAACAAGGGTCAGGCCGAGAAAGAGTTCAAAGTTGAAGTAGAAG 655
Query 737 CAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTG 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTG 715
Query 797 CTCAAAGTCAAAGGATGCTTGTGTATGAATATATTGATAATGGAAACTTGGAGCAGTGGT 856
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 --C----TCAAAGGATGCTTGTGTATGAATATATTGATAATGGAAACTTGGAGCAGTGGT 769
Query 857 TACACGGTGATGTAGGTCCGGTGAGTCCTCTTACGTGGGATATCCGCATGAAGATAGCCA 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 770 TACACGGTGATGTAGGTCCGGTGAGTCCTCTTACGTGGGATATCCGCATGAAGATTGCCA 829
Query 917 TTGGAACAGCAAAAGGATTAGCCTATTTACATGAAGGGCTTGAACCTAAGGTTGTGCACC 976
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 830 TTGGAACAGCAAAAGGATTAGCCTATTTACACGAAGGGCTTGAACCTAAGGTTGTGCACC 889
Query 977 GTGATGTGAAA-TCTAGTAACATCTTGCTCGATAAGAAATGGAACGCGAAAGTGTCTGAT 1035
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 890 GTGATGT-AAAGTCTAGTAACATCTTGCTCGATAAGAAATGGAACGCGAAAGTGTCGGAT 948
Query 1036 TTTGGTTTGGCCAAGTTATTAGGATCTGAAACAAGCTACGTGACAACTCGTGTGATGGGA 1095
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 949 TTCGGTTTGGCCAAGTTATTAGGATCTGAGACAAGCTATGTGACAACTCGTGTGATGGGA 1008
Query 1096 ACTTTTGGATATGTTTCACCGGAATATGCAAGTACTGGTATGCTCAATGAGTGTAGTGAT 1155
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1009 ACTTTTGGATATGTTTCACCGGAATATGCAAGTACGGGTATGCTCAATGAGTGTAGTGAT 1068
Query 1156 GTCTACAGTTTCGGTGTTCTGCTCATGGAGATCATTACAGGAAGGAGCCCAGTTGATTAT 1215
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1069 GTCTACAGTTTCGGTGTTCTGCTCATGGAGATCATTACAGGAAGGAGCCCTGTCGATTAT 1128
Query 1216 TCAAGACCGCCTGGCGAGATGAACTTAGTGGATTGGTTCAAAGGAATGGTTGCAAGTAGA 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TCAAGACCGCCTGGCGAGATGAACTTAGTGGATTGGTTCAAAGGAATGGTTGCAAGTAGA 1188
Query 1276 CGTGGAGAAGAAGTTATAGACCCTAAAATCAAGACATCACCTCCTCCAAGAGCTTTGAAA 1335
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1189 CGTGGAGAAGAAGTTATAGACCCTAAAATAAAGATGTCACCTCCTCCAAGAGCTTTGAAA 1248
Query 1336 AGAGCTTTGCTTGTTTGTTTGCGTTGCATAGACCTTGACTCTAGTAAACGACCAAAGATG 1395
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1249 AGAGCTTTGCTTGTTTGTTTGCGTTGCATAGACCTTGACGCTAGTAAACGACCAAAGATG 1308
Query 1396 GGACAAATCATTCACATGCTTGAGGCTGAAGATTTTCCATTCCGTCCTGAACACAGATCA 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 GGACAAATCATTCACATGCTTGAGGCTGAAGATTTTCCATTCCGTCCTGAACACAGATCA 1368
Query 1456 AACCAGGAAAGATCGAAGTAAGAAAGATTATTGGGCAAACAATAATGTCTTGGGGAAGAC 1515
||||||||||||| ||||| |||||| || | |||||||||||||||||||||||||||
Sbjct 1369 AACCAGGAAAGATTGAAGTGAGAAAGCTTCTAAGGCAAACAATAATGTCTTGGGGAAGAC 1428
Query 1516 CACACTTGAGCGTTGATGCTATTCATTACACAGCCATATATTGATAGATGTT-TC---CA 1571
|||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 1429 CACACTTGAGAGTTGATGCTATTCGTTACACAGCCATATATTGATAGATGTTGTTTTTCA 1488
Query 1572 TGTTTGTTCTTATATTGAGAGGATTGAT-ATGCAAAAGAGAAAATTGGAAAAGTGAAATT 1630
||||||||||||||||||| | |||| | |||||||||| |||||||||||||||| |||
Sbjct 1489 TGTTTGTTCTTATATTGAG-GAATTG-TGATGCAAAAGATAAAATTGGAAAAGTGAGATT 1546
Query 1631 AGATAT-ATGAGGATGAAATTCAGATTTATCGCTTGTAATTTGTAAATAT-ATCATATAT 1688
|||||| ||||||||| |||||||||||| ||||||||||||||||||| || ||||||
Sbjct 1547 AGATATTATGAGGATGGAATTCAGATTTAAGGCTTGTAATTTGTAAATATCAT-ATATAT 1605
Query 1689 TGTATAATAAAACAGTGAACTCTAAGAA 1716
|||||||||||||||||||||| |||||
Sbjct 1606 TGTATAATAAAACAGTGAACTCAAAGAA 1633
Score = 100 bits (54), Expect = 3e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 56 TTTTGTTTGTTTGCTCCTAACGTTTCTCTTTCTTGGAACAATCTCCAGCAAACCAAACTA 115
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1 TTTTGTTTGTTTGCTCCTAACGTTTCTCTTTCTTCGAACAATCTCCAGAAAACCAAACTA 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64791506745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5