BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34510.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491207 jgi|Araly1|491207|fgenesh2_kg.7__640__AT4G34510.1 2217 0.0
Ahg931800 jgi|Araly1|931800|scaffold_304257.1 1029 0.0
> Ahg491207 jgi|Araly1|491207|fgenesh2_kg.7__640__AT4G34510.1
Length=1485
Score = 2217 bits (1200), Expect = 0.0
Identities = 1394/1489 (94%), Gaps = 8/1489 (1%)
Strand=Plus/Plus
Query 1 ATGGATGCTAATGGAGGACCTGTACAGATCCGGACCCAAAACTACGTCAAGCTTGGTTAT 60
||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||
Sbjct 1 ATGGACGCTAATGGAGGACCCGTACAGATCCGGTCCCAACACTACGTCAAGCTTGGTTAT 60
Query 61 CACTATCTGATCACTCACTTTTTTAAACTCATGTTCCTCCCTCTAATGGCTGTTTTGTTC 120
||||||||| ||||||||||||| || || | || ||||| | ||||| |||||||||
Sbjct 61 CACTATCTGCTCACTCACTTTTTGAAGCTTTTATTGATCCCTTTCATGGCGGTTTTGTTC 120
Query 121 ATGAATGTCTCATTGTTAAGCCTAAACCATCTTCAGCTCTATTACAATTCCACCGGATTC 180
||||||||||| || |||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 121 ATGAATGTCTCCTTATTAAGCCTAAACCAGCTCCAGCTCCATTACAATTCCACCGGATTC 180
Query 181 ATCTTCGTCAT-TACTCTCGCCAT-TGTCGGATCCATTGTCTTCTTCATGTCTCGACCTA 238
|||||| |||| || |||| || | | || ||||||||||||||||||||||| ||||
Sbjct 181 ATCTTCATCATCGCCT-TCGCTATAT-TAGGGTCCATTGTCTTCTTCATGTCTCGCCCTA 238
Query 239 GATCCATCTACCTTCTAGATTACTCTTGCTACCTCCCGCCTTCGAGTCAAAAAGTTAGCT 298
||||||| ||||| || |||||||| |||||||||||||| |||| ||||||||||||||
Sbjct 239 GATCCATTTACCTCCTTGATTACTCCTGCTACCTCCCGCCGTCGAATCAAAAAGTTAGCT 298
Query 299 ACCAGAAATTCATGAACAACTCTAGTTTGATTCAAGATTTCAGCGAAACTTCTCTTGAGT 358
|||||| ||||||||| || ||||| ||||||||||||||||||||| ||||||||||||
Sbjct 299 ACCAGACATTCATGAATAATTCTAGCTTGATTCAAGATTTCAGCGAATCTTCTCTTGAGT 358
Query 359 TCCAGAGGAAGATCTTGATTCGCTCTGGTCTCGGTGAAGAGACTTATTTACCGGATTCTA 418
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 359 TCCAGAGGAAGATCTTGATTCGGTCCGGTCTCGGTGAAGAGACTTATTTACCGGAGTCTA 418
Query 419 TTCACTCTATCCCTCCGCGTCCTACTATGGCTGCAGCGCGTGAAGAAGCGGAGCAGGTAA 478
|||||| ||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 419 TTCACTGTATTCCTCCGCGTCCGACTATGGCTGCGGCGCGTGAAGAAGCAGAGCAGGTAA 478
Query 479 TCTTCGGTGCACTCGACAATCTTTTCGAGAATACAAAAATCAATCCTAGGGAGATTGGTG 538
|||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 479 TCTTCGGTGCACTCGACAGTCTCTTCGAGAATACCAAAATCAATCCTAGGGAGATTGGTG 538
Query 539 TTCTTGTTGTGAATTGTAGTTTGTTTAACCCTACGCCTTCTTTATCCGCCATGATTGTTA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCTTGTTGTGAATTGTAGTTTGTTTAACCCTACGCCTTCTTTATCCGCCATGATTGTTA 598
Query 599 ACAAGTATAAGCTTAGAG-GAAACATTAAGAGCTTTAACCTTGGAGGAATGGGATGTAGT 657
|||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||
Sbjct 599 ACAAGTATAAGCTTAGAGTGAA-CATCAAGAGCTTTAACCTTGGAGGAATGGGATGTAGT 657
Query 658 GCTGGTGTTATCGCGGTAGATCTAGCTAGTGATATGTTACAAATCCATAGGAACACTTTT 717
|||||||||||||| | ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 658 GCTGGTGTTATCGCTATTGATCTCGCCAGTGACATGTTACAAATCCATAGGAACACTTTT 717
Query 718 GCTCTTGTGGTTAGTACTGAGAACATCACTCAGAATTGGTATTTTGGTAACAAGAAAGCA 777
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 718 GCTCTTGTGGTTAGTACTGAGAACATCACTCAGAACTGGTATTTTGGTAACAACAAAGCA 777
Query 778 ATGTTGATCCCTAATTGCTTGTTTAGAGTTGGTGGTTCCGCGGTTCTGCTTTCGAACAAG 837
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 ATGTTGATCCCTAATTGCTTGTTTAGAGTTGGTGGATCCGCGGTTCTGCTTTCGAACAAG 837
Query 838 CCTTTGGATCGAAAACGATCCAAGTATAAGCTTGTTCATACGGTCAGGACTCATAAAGGA 897
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 838 CCTTTGGATCGAAAACGATCCAAGTATAAGCTTGTTCATACGGTGAGGACTCATAAAGGA 897
Query 898 TCTGATGAGAACGCATTCAATTGTGTGTATCAAGAACAAGATGAGTGTTTGAAAACCGGA 957
||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 898 TCTGATGAGAAAGCATTTAAGTGTGTGTACCAAGAACAAGATGAGTGTTTGAAAACCGGA 957
Query 958 GTTTCTTTGTCTAAAGATCTTATGGCTATAGCTGGAGAAGCTTTAAAGACGAATATCACT 1017
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 GTTTCTTTGTCTAAAGATCTTATGGCTATAGCCGGAGAAGCTTTAAAGACGAATATCACT 1017
Query 1018 TCTTTGGGTCCTCTGGTTCTTCCTATAAGCGAGCAGATTCTGTTCTTTGCGACTTTTGTT 1077
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 ACGTTGGGTCCTCTGGTTCTTCCTATAAGCGAGCAGATTCTGTTCTTTGCGGCTTTTGTT 1077
Query 1078 GCTAAGAGATTGTTCAATGACAAGAAGAAGAAGCCTTACATACCGGATTTCAAGCTTGC- 1136
||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1078 GCTAAGAGATTTTTCAATGTCAAGGAGAAGAAGCCTTACATACCGGATTTCAAGCTTGCA 1137
Query 1137 TTTAGATCATTTCTGTATTCACGCGGGAGGTAGAGCCGTGATTGATGAGCTAGAGAAGAG 1196
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 TTT-GATCATTTCTGTATTCACGCGGGAGGTAGAGCCGTGATCGATGAGCTAGAGAAGAA 1196
Query 1197 TTTAAAGCTTTCTCCAAAACATGTTGAGGCGTCTAGAATGACTTTGCATAGATTTGGAAA 1256
|||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1197 TTTAAAGCTTTCGCCAAAACATGTCGAGGCGTCTAGAATGACATTGCATAGATTTGGAAA 1256
Query 1257 CACTTCCTCTAGCTCTATATGGTATGAATTGGCTTACACGGAAGCTAAAGGAAGAATGAG 1316
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1257 CACTTCCTCTAGCTCTATATGGTATGAATTGGCGTACACGGAAGCTAAAGGAAGAATGAG 1316
Query 1317 GAAAGGAAACAGAGTTTGGCAGATTGCTTTTGGTAGCGGGTTTAAGTGTAACAGCGCGGT 1376
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1317 GAAAGGGAACAGGGTTTGGCAGATTGCTTTTGGAAGCGGGTTTAAGTGTAACAGCGCAGT 1376
Query 1377 TTGGGTGGCTCTTCGCAATGTCGAGCCCTCGGTTAACAATCCTTGGGAACATTGCATCCA 1436
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1377 TTGGGTGGCTCTTCGCGATGTCAAGCCCTCGGTTAACAATCCTTGGGAACATTGCATCCA 1436
Query 1437 TAGATATCCGGTTAAGATCGATCTTTGAACTCATAAAAACTAGTAGATT 1485
|||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 1437 TAGATATCCGGTTAAGATCGATCTTTGAACTCATCAGAACGGGTAGATT 1485
> Ahg931800 jgi|Araly1|931800|scaffold_304257.1
Length=1578
Score = 1029 bits (557), Expect = 0.0
Identities = 1057/1297 (81%), Gaps = 40/1297 (3%)
Strand=Plus/Plus
Query 199 GCCATTGTCGGATCCATTGTCTTCT-TCATGTCTCGACCTAGATCCATCTACCTTC-TAG 256
|||||| | || |||| || || | ||||| ||| || |||||| | || | || | |
Sbjct 294 GCCATTTTTGGCTCCACCGT-TTATATCATGAGTCGTCCCAGATCCGTTTATC-TCGTTG 351
Query 257 ATTACTCTTGCTACCTCCCGCCTTCGAGTCAAAAAGTT-AGCTACCAGAAATTCAT-GAA 314
|||||||||| || || || || ||||| | ||| || || ||||| || || ||
Sbjct 352 ATTACTCTTGTTATCTTCCTCCAGAGAGTCTTCAGGTTAAG-TATCAGAAGTTTATGGAT 410
Query 315 CAACTCT-AGTTTGATTCAAGATTTCAGCGAAACTTCTCTT-GAGTTCCAGAGGAAGA-T 371
| | ||| || || ||| ||||||||| || ||||| || ||||| |||||||||| |
Sbjct 411 C-ATTCTAAG-TTAATTGAAGATTTCAATGAGTCTTCT-TTAGAGTTTCAGAGGAAGATT 467
Query 372 CTTGATTCGCTCTGGTCTCGGTGAAGAGACTTATTTACCGGATTCTATT-CACTCTATCC 430
||||| || |||||| | ||||||||||||||| | || || || || || | |||||
Sbjct 468 CTTGA-ACGTTCTGGTTTAGGTGAAGAGACTTATCTCCCTGAAGCT-TTACATTGTATCC 525
Query 431 CTCCGCGTCCTACTATGGCT-GCAGCGCGTGAAGAAGCGGAGCAGGTAATCTTCGGTGCA 489
|||||||||| || || | | || ||||| || ||||| ||||||||||| ||||||||
Sbjct 526 CTCCGCGTCCGACGAT-GATGGCGGCGCGGGAGGAAGCTGAGCAGGTAATGTTCGGTGCT 584
Query 490 CTCGACAATCTTTTCGAGAATACAAAAATCAATCCTAGGGAGATTGGTGTTCTT-GTTGT 548
||||| || ||||||||||| || | || || || ||||| ||||||| | || |||||
Sbjct 585 CTCGATAAGCTTTTCGAGAACACCGAGATTAACCCGAGGGATATTGGTG-TGTTGGTTGT 643
Query 549 GAATTGTAGTTTGTTTAACCCTACGCCTTCTTTATCCGCCATGATTGTTAACAAGTATAA 608
||||||||| |||||||| ||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 644 GAATTGTAGCTTGTTTAATCCTACACCTTCGTTATCTGCTATGATTGTTAACAAGTATAA 703
Query 609 GCTTAGAGGAAACATTAAGAGCTTTAACCTTGGAGGAATGGGATGTAGTGCTGGTGTTAT 668
||||||||| || ||||||| ||||| ||||| |||||||| |||||||| ||||||||
Sbjct 704 GCTTAGAGGGAATGTTAAGAGTTTTAATCTTGGTGGAATGGGGTGTAGTGCGGGTGTTAT 763
Query 669 CGCGGTAGATCTAGCTAGTGATATGTTACAAATCCATAGGAACACTTTTGCTCTTGTGGT 728
||| | ||| |||| | |||||||| ||| | |||||||| |||| |||| |||||||
Sbjct 764 CGCTATCGATTTAGCGAAAGATATGTTGCAAGTTCATAGGAATACTTATGCTGTTGTGGT 823
Query 729 TAGTACTGAGAACATCACTCAGAATTGGTATTTTGGTAACAAGAAAGCAATGTTGATCCC 788
|||||||||||| || |||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 824 TAGTACTGAGAATATTACTCAGAATTGGTATTTTGGGAATAAGAAGGCAATGTTGATTCC 883
Query 789 TAATTGCTTGTTTAGAGTTGGTGGTTCCGCGGTTCTGCTT-TCGAACAAGCCTTTGGATC 847
||||| |||||| | ||||||||||| ||| || || || ||||| ||| | |||||
Sbjct 884 GAATTGTTTGTTTCGGGTTGGTGGTTCGGCGATTTTG-TTGTCGAATAAGGGTAAGGATC 942
Query 848 GAAAACGATCCAAGTATAAGCTT-GTTCATACGGTCAGGACTCATAAAGGATCTGATGAG 906
| | ||| || ||||||||| || ||||||||||| ||||||||||||||| ||| ||||
Sbjct 943 GTAGACGGTCTAAGTATAAG-TTGGTTCATACGGTTAGGACTCATAAAGGAGCTGTTGAG 1001
Query 907 AACGCATTCAATTGTGTGTATCAAGAACAAGATGAGT-GTTTGAAAACCGGAGTTTCTTT 965
|| || ||||||||||| || |||||||| ||||| | | ||| ||||| ||||||||
Sbjct 1002 AAGGCTTTCAATTGTGTTTACCAAGAACAGGATGA-TAATGGGAAGACCGGGGTTTCTTT 1060
Query 966 GTCTAAAGATCTTATGGCTATAGCTGGAGAAGCT-TTAAAGACGAATATCACTTCTTTGG 1024
||| ||||||||||||||||||||||| |||||| || ||| ||||||||||| ||||||
Sbjct 1061 GTCGAAAGATCTTATGGCTATAGCTGGGGAAGCTCTT-AAGGCGAATATCACTACTTTGG 1119
Query 1025 GTCCTCTGGTTCTTCCTATAAGCGAGCAGATTCTGTTCTTTGC--GACTTTTGTTGCTAA 1082
||||| ||||||||||||||||||||||||||||||| ||| | |||||| ||| | ||
Sbjct 1120 GTCCTTTGGTTCTTCCTATAAGCGAGCAGATTCTGTT-TTT-CATGACTTTGGTTACGAA 1177
Query 1083 GAGATTGTTCAATGACAAGAAGAAGAAGCCTTACATACCGGATTTCAAGCTTGCTTTAGA 1142
|| |||||| || | | ||| |||||| || || ||||||||||||||||| || ||
Sbjct 1178 GAAATTGTTTAACG-C--TAAGCTGAAGCCGTATATCCCGGATTTCAAGCTTGCGTTCGA 1234
Query 1143 TCATTTCTGTATTCACGCGGGAGGTAGAGCCGTGATTGATGAGCTAGAGAAGAGTTTAAA 1202
|||||||||||| || || || |||||||| |||||||||||||||||||||| | | |
Sbjct 1235 TCATTTCTGTATCCATGCTGGTGGTAGAGCTGTGATTGATGAGCTAGAGAAGAATCTGCA 1294
Query 1203 GCTTTCTCCA-AAACATGTTGAGGCGTCTAGAATGACTTTGCATAGATTTGGAAACACTT 1261
||||||| || | ||| || ||||| || |||||||| |||| |||||||||||||| |
Sbjct 1295 GCTTTCT-CAGACACACGTCGAGGCATCGAGAATGACACTGCACAGATTTGGAAACACAT 1353
Query 1262 CCTCTAGCTCTATATGGTATGAATTGGCTTACACGGAAGCTAAAGGAAGAATGAGGAAAG 1321
| || ||||| || ||||||||| ||||||||| || || ||||| ||||||| |||||
Sbjct 1354 CATCGAGCTCGATTTGGTATGAACTGGCTTACATAGAGGCCAAAGGTAGAATGAAGAAAG 1413
Query 1322 GAAACAGAGTTTGGCAGATTGCTTTTGGTAGCGGGTTTAAGTGTAACAGCGCGGTTTGGG 1381
||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1414 GAAACCGGGTTTGGCAGATTGCTTTTGGAAGTGGGTTTAAGTGTAACAGCGCGGTTTGGG 1473
Query 1382 TGGCTCTTCGCAATGTCGAGCCCTCGGTTAACAATCCTTGGGAACATTGCATCCATAGAT 1441
||||||| | |||||| |||| ||||||| | ||| |||||||| || ||| | |||
Sbjct 1474 TGGCTCTGCACAATGTTAAGCCTTCGGTTAGTAGTCCATGGGAACACTGTATCGACCGAT 1533
Query 1442 ATCCGGTTAAGATCGATCTT-TGAACTCAT-AAAAAC 1476
||||||||||| |||| ||| ||| | || ||||||
Sbjct 1534 ATCCGGTTAAGCTCGA-CTTCTGATTTAATCAAAAAC 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5