BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34520.1
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944450 jgi|Araly1|944450|scaffold_700679.1 2366 0.0
Ahg491207 jgi|Araly1|491207|fgenesh2_kg.7__640__AT4G34510.1 505 5e-142
> Ahg944450 jgi|Araly1|944450|scaffold_700679.1
Length=1559
Score = 2366 bits (1281), Expect = 0.0
Identities = 1458/1544 (94%), Gaps = 9/1544 (1%)
Strand=Plus/Plus
Query 1 ATGACGTCCGTTAACGTTAAGCTCCTTTACCGTTACGTCTTAACCAACTTTTTCAACCTC 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 22 ATGACGTCCGTTAACGTTAAGCTCCTTTACCATTACGTCTTAACCAACTTTTTCAACCTC 81
Query 61 TGTTTGTTCCCGTTAACGGCGTTCCTCGCCGGAAAAGCCTCTCGGCTTACCATAAACGAT 120
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 82 TGTTTGTTCCCGTTAACGGCGTTCGTCGCCGGAAAAGCCTCTCGGCTTACCACAAACGAT 141
Query 121 CTCCACAACTTCCTTTCCTATCTCCAACACAACCTTATAACAGTAACTTTACTCTTTGCT 180
|||||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 142 CTCCACAACTTCTTTTCCTATCTCCAACACAACCTTATAACCGTAGCTATACTCTTTGCT 201
Query 181 TTCACTGT-TTTCGGTTTGGTTCTCTACATCGTAACCCGACCCAATCCGGTTTATCTCGT 239
|||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 202 TTCACTGTCTTT-GGTTTTGTTCTCTACATGGTAACCCGACCCAAACCGGTTTATCTCGT 260
Query 240 TGACTACTCGTGTTACCTTCCACCACCGCATCTCAAAGTTAGTGTCTCTAAAGTCATGGA 299
|||||||||||| |||||||||||||||||||||| || |||||||| | |||||||||
Sbjct 261 TGACTACTCGTGCTACCTTCCACCACCGCATCTCAGAGCCAGTGTCTCCAGAGTCATGGA 320
Query 300 TATTTTCTACCAAATAAGAAAAGCTGATACTTCTTCACGGAACGTGGCATGTGATGATCC 359
| ||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 321 TGTTTTCTATCAAATAAGAAAAGCTGATA---CTTCACGGAACGTGGCATGCGATGATCC 377
Query 360 GTCCTCGCTCGATTTCCTGAGGAAGATTCAAGAGCGTTCAGGTCTAGGTGATGAGACGTA 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 378 GTCCTCGCTTGATTTCCTGAGGAAGATTCAAGAGCGTTCAGGTCTAGGTGATGAGACCTA 437
Query 420 CAGTCCTGAGGGACTCATTCACGTACCACCGCGGAAGACTTTTGCAGCGTCACGTGAAGA 479
| |||| ||||||||| ||||||| || || |||||||||||||||||| ||||||||||
Sbjct 438 CGGTCCCGAGGGACTCCTTCACGTGCCCCCACGGAAGACTTTTGCAGCGGCACGTGAAGA 497
Query 480 GACAGAGAAGGTTATCATCGGTGCGCTCGAAAATCTATTCGAGAACACCAAAGTTAACCC 539
||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 498 GACAGAGCAGGTTATCATTGGTGCGCTCGAAAATCTATTCCAGAACACCAAAGTTAACCC 557
Query 540 TAGAGAGATTGGTATACTTGTGGTGAACTCAAGCATGTTTAATCCAACTCCTTCGCTATC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 558 TAGAGAGATTGGTATACTTGTGGTGAACTCAAGCATGTTTAATCCAACTCCTTCGCTTTC 617
Query 600 CGCTATGGTCGTTAATACTTTCAAGCTCCGAAGCAACATCAAAAGCTTTAATCTAGGAGG 659
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 618 CGCGATGGTCGTTAATACTTTCAAGCTCCGAAGCAACATCAAAAGCTTTAATCTTGGAGG 677
Query 660 AATGGGTTGTAGTGCTGGTGTTATTGCCATTGAT-TTGGCTAAAGACTTGTTGCATGTTC 718
|||||||||||||||||||||||| ||||||||| || || || ||||||||||||||||
Sbjct 678 AATGGGTTGTAGTGCTGGTGTTATCGCCATTGATCTT-GCGAAGGACTTGTTGCATGTTC 736
Query 719 ATAAAAACACTTATGCTCTTGTGGTGAGCACTGAGAACATCACACAAGGCATTTATGCTG 778
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 737 ATAAAAACACTTATGCTCTTGTGGTGAGCACTGAGAACATCACTCAAGGGATTTATGCTG 796
Query 779 GAGAAAATAGATCAATGATGGTTAGCAATTGCTTGTTTCGTGTTGGTGGGGCCGCGATTT 838
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 797 GCGAAAATAGATCAATGATGGTTAGCAATTGCTTGTTCCGTGTTGGTGGGGCCGCGATTT 856
Query 839 TGCTCTCTAACAAGTCGGGAGACCGGAGACGGTCCAAGTACAAGCTAGTTCACACGGTCC 898
||||||| |||||| | |||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 857 TGCTCTCCAACAAGCCTAGAGATCGGAGACGGTCCAAGTACAAGCTAGCTCACACGGTTC 916
Query 899 GAACGCATACTGGAGCTGATGACAAGTCTTTTCGATGTGTGCAACAAGAAGACGATGAGA 958
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 GAACCCATACGGGAGCTGATGACAAGTCTTTTCGATGTGTGCAACAAGAAGACGATGAGA 976
Query 959 GCGGCAAAATCGGAGTTTGTCTGTCAAAGGACATAACCAATGTTGCGGGGACAACACTTA 1018
| || |||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 977 GTGGTAAAATCGGTGTTTGTCTGTCAAAGGACATAACCAATGTTGCGGGGACAACGCTAA 1036
Query 1019 CGAAAAATATAGCAACATTGGGTCCGTTGATTCTTCCTTTAAGCGA-AAAGTTTCttttt 1077
|||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1037 AGAAAAACATAGCAACATTGGGTCCGTTGATTCTTCCTTTAAGCGAGAAA-TTTCTTTTT 1095
Query 1078 ttCGCTACCTTCGTCGCCAAGAAACTTCTAAAGGATAAAATCAAGCATTACTATGTTCCG 1137
|||| |||||||||||||||||||||| ||||||| | |||||||||||||||||| |||
Sbjct 1096 TTCGTTACCTTCGTCGCCAAGAAACTTTTAAAGGACAGAATCAAGCATTACTATGTCCCG 1155
Query 1138 GATTTCAAGCTTGCTGTTGACCATTTCTGTATTCATGCCGGAGGCAGAGCCGTGATCGAT 1197
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GATTTTAAGCTTGCTATTGACCATTTCTGTATTCATGCCGGAGGCAGAGCCGTGATCGAT 1215
Query 1198 GAGCTAGAGAAGAACTTAGGACTATCGCCGATCGATGTGGAGGCATCTAGATCAACGTTA 1257
||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1216 GAGCTAGAGAAGAGCTTAGGACTATCACCGATCGACGTGGAGGCATCTAGATCAACGTTA 1275
Query 1258 CATAGATTTGGGAATACTTCATCTAGCTCAATTTGGTATGAATTAGCATACATAGAGGCA 1317
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 1276 CATAGATTTGGGAATACGTCGTCTAGCTCAATTTGGTATGAATTGGCATACATAGAGGCA 1335
Query 1318 AAGGGAAGAATGAAGAAAGGGAATAAAGCTTGGCAGATTGCTTTAGGATCAGGGTTTAAG 1377
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 AAAGGAAGAATGAAGAAAGGGAATAAAGCTTGGCAGATTGCTTTAGGATCAGGGTTTAAG 1395
Query 1378 TGTAATAGTGCGGTTTGGGTGGCTCTACGCAATGTCAAGGCATCGGCAAATAGTCCTTGG 1437
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1396 TGTAATAGTGCGGTTTGGGTGGCTCTACGCAATGTCAAGCCTTCGGCAAATAGTCCTTGG 1455
Query 1438 CAACATTGCATCGATAGATATCCGGTTAAAATTGATTCTGATTTGTCAAAGTCAAAGACT 1497
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1456 CAACATTGCATCGATAGATATCCGGCTAAAATTGATTCTGATTTGTCAAAGTCAGAGACT 1515
Query 1498 CATGTCCAAAACGGTCGGTCCTAATTTGATGTATCTGAGTGCCA 1541
||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1516 CATGTCCAAAACGGTCGGTCCTAATTTGATGTACCCGAGTGCCA 1559
> Ahg491207 jgi|Araly1|491207|fgenesh2_kg.7__640__AT4G34510.1
Length=1485
Score = 505 bits (273), Expect = 5e-142
Identities = 859/1135 (76%), Gaps = 68/1135 (6%)
Strand=Plus/Plus
Query 373 TTCCTGAGGAAGATTCAAGA-GCGTTCAGGTCTAGGTGATGAGACGTACAGT-CCTGAGG 430
|||| |||||||| || || || || ||||| ||||| ||||| || | || | |
Sbjct 358 TTCCAGAGGAAGA-TCTTGATTCGGTCCGGTCTCGGTGAAGAGACTTA-TTTACC-G-GA 413
Query 431 GACTCATTCAC-GTA--CCACCGCGGAAGACTTTTGCAGCGTCACGTGAAG-AGACAGAG 486
| || |||||| ||| || ||||| |||| | || ||| | ||||||| || |||||
Sbjct 414 GTCT-ATTCACTGTATTCCTCCGCGTCCGACTATGGCTGCGGCGCGTGAAGAAG-CAGAG 471
Query 487 AAGGTTATCATCGGTGCGCTCGAAAATCTATTCGAGAACACCAAAGTTAACCCTAGAGAG 546
|||| ||| ||||||| ||||| | ||| |||||||| |||||| | || ||||| |||
Sbjct 472 CAGGTAATCTTCGGTGCACTCGACAGTCTCTTCGAGAATACCAAAATCAATCCTAGGGAG 531
Query 547 ATTGGTATACTTGTGGTGAACTCAAGCATGTTTAATCCAACTCCTTCGCTATCCGCTATG 606
|||||| | ||||| ||||| | || ||||||| || || ||||| ||||||| |||
Sbjct 532 ATTGGTGTTCTTGTTGTGAATTGTAGTTTGTTTAACCCTACGCCTTCTTTATCCGCCATG 591
Query 607 GTCGTTAA-TACTTTCAAGCTCCGAAG-CAACATCAAAAGCTTTAATCTAGGAGGAATGG 664
| ||||| | | | ||||| | || |||||||| |||||||| || ||||||||||
Sbjct 592 ATTGTTAACAAGTAT-AAGCTTAG-AGTGAACATCAAGAGCTTTAACCTTGGAGGAATGG 649
Query 665 GTTGTAGTGCTGGTGTTATTGCCATTGATTTGGCTAAAGACTTGTTGCATGTTCATAAAA 724
| ||||||||||||||||| || |||||| | || | ||| |||| || | |||| |
Sbjct 650 GATGTAGTGCTGGTGTTATCGCTATTGATCTCGCCAGTGACATGTTACAAATCCATAGGA 709
Query 725 ACACTTATGCTCTTGTGGTGAGCACTGAGAACATCA--CACAA--GGCATTTATGCTGGA 780
|||||| |||||||||||| || ||||||||||||| || || || |||| || | |
Sbjct 710 ACACTTTTGCTCTTGTGGTTAGTACTGAGAACATCACTCAGAACTGGTATTT-TG--GTA 766
Query 781 GAAAATAGATCAATGATGGTTAGC-AATTGCTTGTTTCGTGTTGGTGGGGCCGCGATTTT 839
| || | | ||||| | | | | |||||||||||| | |||||||| ||||| || |
Sbjct 767 -ACAACAAAGCAATG-TTGATCCCTAATTGCTTGTTTAGAGTTGGTGGATCCGCGGTTCT 824
Query 840 GCTCTCTAACAAGTC-GGGAGACCGGAGACGGTCCAAGTACAAGCTAGTTCACACGGTCC 898
||| || |||||| | | || || | ||| |||||||| ||||| ||||| |||||
Sbjct 825 GCTTTCGAACAAGCCTTTG-GATCGAAAACGATCCAAGTATAAGCTTGTTCATACGGTGA 883
Query 899 GAACGCATACTGGAGCTGATGA-CAAGTC-TTTTCGATGTGTGCAACAAGAAGACGATGA 956
| || |||| ||| ||||||| ||| | ||| | |||||| | |||||| | |||||
Sbjct 884 GGACTCATAAAGGATCTGATGAGAAAG-CATTTAAG-TGTGTGTACCAAGAACAAGATGA 941
Query 957 GAG-CGGCAAAATCGGAGTTTGTCTGTC-AAAGGA-CATAACCAATGTTG-CGGGGACAA 1012
| | | |||| |||||||| | |||| ||| || | | | | | | ||| || |
Sbjct 942 GTGTTTG-AAAACCGGAGTTTCTTTGTCTAAA-GATC-TTATGGCTATAGCCGGAGA-AG 997
Query 1013 CACTT-ACGAAAAATAT-AGCAACATTGGGTCCGT-TGATTCTTCCTTTAAGCGAAAAGT 1069
| || | || ||||| | | || |||||||| | || |||||||| ||||||| ||
Sbjct 998 C-TTTAAAGACGAATATCA-CTACGTTGGGTCC-TCTGGTTCTTCCTATAAGCGAGCAGA 1054
Query 1070 TTCt-ttttttCGCTACCTTCGTCGCCAAGAAACTTCTAAAGGAT-AA--A-ATCAAGCA 1124
|||| || ||| || | || || || |||| | || | || | | || | | ||||
Sbjct 1055 TTCTGTTCTTT-GCGGCTTTTGTTGCTAAGAGATTTTTCAATG-TCAAGGAGAAGAAGCC 1112
Query 1125 TTACTATGTTCCGGATTTCAAGCTTGC-TGTTGACCATTTCTGTATTCATGCCGGAGGCA 1183
|||| | | ||||||||||||||||| | |||| |||||||||||||| || ||||| |
Sbjct 1113 TTAC-A--TACCGGATTTCAAGCTTGCAT-TTGATCATTTCTGTATTCACGCGGGAGGTA 1168
Query 1184 GAGCCGTGATCGATGAGCTAGAGAAGAACTTAG-GACTATCGCCGAT-CGATGTGGAGGC 1241
|||||||||||||||||||||||||||| ||| | || ||||| | | |||| |||||
Sbjct 1169 GAGCCGTGATCGATGAGCTAGAGAAGAATTTAAAG-CTTTCGCCAAAAC-ATGTCGAGGC 1226
Query 1242 ATCTAGA-TCAACGTTACATAGATTTGGGAATACTTCATCTAGCTCAATTTGGTATGAAT 1300
|||||| | | | || ||||||||||| || ||||| |||||||| || ||||||||||
Sbjct 1227 GTCTAGAATGA-CATTGCATAGATTTGGAAACACTTCCTCTAGCTCTATATGGTATGAAT 1285
Query 1301 TAGCATACATAGAGGC-AAAGGGAAGAATGAAGAAAGGGAATAAAGCTTGGCAGATTGCT 1359
| || |||| || || ||||| |||||||| ||||||||| | | |||||||||||||
Sbjct 1286 TGGCGTACACGGAAGCTAAAGG-AAGAATGAGGAAAGGGAACAGGGTTTGGCAGATTGCT 1344
Query 1360 TTAGGAT-CAGGGTTTAAGTGTAATAGTGCGGTTTGGGTGGCTCTACGCAATGTCAAGGC 1418
|| ||| | |||||||||||||| || || |||||||||||||| ||| |||||||| |
Sbjct 1345 TTTGGAAGC-GGGTTTAAGTGTAACAGCGCAGTTTGGGTGGCTCTTCGCGATGTCAAGCC 1403
Query 1419 ATCGGCAAATAGTCCTTGGCAACATTGCATCGATAGATATCCGGTTAAAATTGAT 1473
|||| || | ||||||| ||||||||||| |||||||||||||||| || |||
Sbjct 1404 CTCGGTTAACAATCCTTGGGAACATTGCATCCATAGATATCCGGTTAAGATCGAT 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61401474940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5