BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G34530.1 Length=1311 Score E Sequences producing significant alignments: (Bits) Value Ahg491205 jgi|Araly1|491205|fgenesh2_kg.7__638__AT4G34530.1 1616 0.0 > Ahg491205 jgi|Araly1|491205|fgenesh2_kg.7__638__AT4G34530.1 Length=1213 Score = 1616 bits (875), Expect = 0.0 Identities = 1127/1242 (91%), Gaps = 44/1242 (4%) Strand=Plus/Plus Query 61 AAGAAGACGATAACGATGAATGGAGCTATAGGAGGTGACCTTTTGCTCAATTTTC-CTGA 119 ||||||| |||||||||||||||||||||||||||||||||||| ||||| || | | || Sbjct 1 AAGAAGAAGATAACGATGAATGGAGCTATAGGAGGTGACCTTTTACTCAA-TTGCACGGA 59 Query 120 CATGTCGGTCCTAGAGCGCCAAAGGGCTCACCTCAAGTACCTCAATCCCACCTTTGATTC 179 ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| Sbjct 60 CATGTCGGTCCTAGAGCGCCAAAGGGCTCACCTTAAGTATCTCAATCCCAGCTTTGATTC 119 Query 180 TCCTCTCGCCGGCTTCTTTGCCGATTCTTCAATGATTACCGGCGGCGAGATGGACAGCTA 239 ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| Sbjct 120 TCCTCTCGCCGGCTTCTTTGCCGATTCATCAATGATTAACGGCGGCGAGATGGACGGCTT 179 Query 240 TCTTTCGACTGCCGGTTTGAATCTTCCGATGATGTACGGTG-AGACGACGGTGGAAGGTG 298 |||| |||||||||||||||||||||||||||| ||||| | |||||||||||||||||| Sbjct 180 TCTTGCGACTGCCGGTTTGAATCTTCCGATGATTTACGG-GCAGACGACGGTGGAAGGTG 238 Query 299 ATTCAAGACTCTCAATTTCGCCGGAAACGACGCTTGGGACTGGAAATTTCAAGAAACGGA 358 || ||||| | |||||||| |||||||| ||||||||||||||||||||||||||| ||| Sbjct 239 ATCCAAGAATGTCAATTTCCCCGGAAACTACGCTTGGGACTGGAAATTTCAAGAAAAGGA 298 Query 359 AGTTTGATACAGAGACTAAGGATTGTAatgagaagaagaagaagatgacgatgaacagag 418 ||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||| Sbjct 299 AGTTTGATACAGAGACTAAGGATTGTAAT--G-AGAAGAAGAAGA--A-GATGAACAGAG 352 Query 419 atgacctagtaga-agaaggagaagaagagaagTCGAAAATAACAGAGCAAAACAATGGG 477 | || |||| | ||||| ||||||||| ||||||||||||||||| | |||||||||| Sbjct 353 AAGA---AGTA-ACAGAAGAAGAAGAAGAAAAGTCGAAAATAACAGAACTAAACAATGGG 408 Query 478 AGCACAAAAAGCATCAAGAAGATGAAACACAAAGCCAAGAAAGAAGAGAACAATTTCTCT 537 ||| ||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||| Sbjct 409 AGCCCAATAAGCATCAAGAAGATGAAAAACAAAGCCAAGAAAGAAGAGAAAAATTGCTCT 468 Query 538 AATGATTCATCTAAAGTGACGAAGGAATTGGAGAAAACGGATTATATTCATGTTCGTGCA 597 || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 469 AACGATTCATCTAAAGTGACGAAGGAACTGGAGAAAACGGATTATATTCATGTTCGTGCA 528 Query 598 CGACGAGGCCAAGCCACTGATAGTCACAGCATAGCAGAACGAGTTAGAAGAGAAAAGATC 657 || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 529 CGTCGAGGCCAAGCCACTGATAGTCACAGCATAGCAGAGCGGGTTAGAAGAGAAAAGATT 588 Query 658 AGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCTGGATGCGACAAGATCACAGGCAAA 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 AGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCTGGATGCGACAAGATCACAGGCAAA 648 Query 718 GCAGGGATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGTTC 777 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 649 GCAGGGATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATTGAGTTC 708 Query 778 TTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTT 837 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 709 TTATCGATGAAGCTAGCAGTTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTT 768 Query 838 GCCAAAGAGGT--T-GCCTCAACTCCAATGACTGTGGTGCCATCTCCTGAAATGGTTCTT 894 ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| Sbjct 769 GCCAAAGAGGTAATTGTCTCAACTCCAATGACTGTGGTGCCATCTCCTGAAATGGTTCAC 828 Query 895 TCCGGTTATTCTCATGAGATGGTTCACTCTGGTTATTCTAGTGAGATGGTTAACTCCGGT 954 |||||||||||||||||||||||| | || || ||||| | |||||||||||| |||||| Sbjct 829 TCCGGTTATTCTCATGAGATGGTTAATTCCGGCTATTCCAATGAGATGGTTAATTCCGGT 888 Query 955 TACCTTCATGTCAATCCAATGCAGCAAGTG-AATACCAGTTCTGATCCATTGTCATGCTT 1013 || | ||||||||||||||||||||||| | || ||||||||||||||| |||||||||| Sbjct 889 TATCATCATGTCAATCCAATGCAGCAAGCGGAA-ACCAGTTCTGATCCACTGTCATGCTT 947 Query 1014 CAACAATGGCGAAGCTCCTTCGATGTGGGACTCTCATGTGCAGAATCTCTATGGCAATTT 1073 |||||||||| |||||||||| |||||||||||| ||||||||||||| ||||| | ||| Sbjct 948 CAACAATGGCCAAGCTCCTTCAATGTGGGACTCTTATGTGCAGAATCTTTATGGGAGTTT 1007 Query 1074 AGGAGTTTGATTAAGAA-ACCAATCCACAACATAACAATGTTCCCTAATTCAAATTATTC 1132 ||||||||||||||||| | | || |||||| |||||||||||||||||||||||||||| Sbjct 1008 AGGAGTTTGATTAAGAACAACGATTCACAACTTAACAATGTTCCCTAATTCAAATTATTC 1067 Query 1133 ATCGGAAGAGA-GAG----CAAACC-AGTAGCTGTTATTTACTAATT-CCACTAGATTAT 1185 ||||||||||| ||| ||||| | ||||||||||||||||||| || ||||||||| Sbjct 1068 ATCGGAAGAGAAGAGAGAGCAAACTTA-TAGCTGTTATTTACTAATTTCC-CTAGATTAT 1125 Query 1186 TGACTTGAGATCCCCCGCCCATTAGTTGATGTATCAAAGAGTGTAGACATTATTGTGTAT 1245 ||||||||||| ||||||||||| || |||||||||| | || | | | |||||| Sbjct 1126 TGACTTGAGATTTCCCGCCCATTATTTTATGTATCAAA---T-TA-A-AG-A--GTGTAT 1176 Query 1246 AATTTGCAAACCAGTCCAGTAATATATTTCTTATCGGTGGAC 1287 || |||||||||||| || ||||||||||| | |||||| Sbjct 1177 AAATTGCAAACCAGT----TA-TATATTTCTTACCAGTGGAC 1213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49026071262 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5