BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34540.1
Length=2805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491205 jgi|Araly1|491205|fgenesh2_kg.7__638__AT4G34530.1 1616 0.0
Ahg944446 jgi|Araly1|944446|scaffold_700675.1 1517 0.0
> Ahg491205 jgi|Araly1|491205|fgenesh2_kg.7__638__AT4G34530.1
Length=1213
Score = 1616 bits (875), Expect = 0.0
Identities = 1127/1242 (91%), Gaps = 44/1242 (4%)
Strand=Plus/Plus
Query 61 AAGAAGACGATAACGATGAATGGAGCTATAGGAGGTGACCTTTTGCTCAATTTTC-CTGA 119
||||||| |||||||||||||||||||||||||||||||||||| ||||| || | | ||
Sbjct 1 AAGAAGAAGATAACGATGAATGGAGCTATAGGAGGTGACCTTTTACTCAA-TTGCACGGA 59
Query 120 CATGTCGGTCCTAGAGCGCCAAAGGGCTCACCTCAAGTACCTCAATCCCACCTTTGATTC 179
||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 60 CATGTCGGTCCTAGAGCGCCAAAGGGCTCACCTTAAGTATCTCAATCCCAGCTTTGATTC 119
Query 180 TCCTCTCGCCGGCTTCTTTGCCGATTCTTCAATGATTACCGGCGGCGAGATGGACAGCTA 239
||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 120 TCCTCTCGCCGGCTTCTTTGCCGATTCATCAATGATTAACGGCGGCGAGATGGACGGCTT 179
Query 240 TCTTTCGACTGCCGGTTTGAATCTTCCGATGATGTACGGTG-AGACGACGGTGGAAGGTG 298
|||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 180 TCTTGCGACTGCCGGTTTGAATCTTCCGATGATTTACGG-GCAGACGACGGTGGAAGGTG 238
Query 299 ATTCAAGACTCTCAATTTCGCCGGAAACGACGCTTGGGACTGGAAATTTCAAGAAACGGA 358
|| ||||| | |||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 239 ATCCAAGAATGTCAATTTCCCCGGAAACTACGCTTGGGACTGGAAATTTCAAGAAAAGGA 298
Query 359 AGTTTGATACAGAGACTAAGGATTGTAatgagaagaagaagaagatgacgatgaacagag 418
||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||
Sbjct 299 AGTTTGATACAGAGACTAAGGATTGTAAT--G-AGAAGAAGAAGA--A-GATGAACAGAG 352
Query 419 atgacctagtaga-agaaggagaagaagagaagTCGAAAATAACAGAGCAAAACAATGGG 477
| || |||| | ||||| ||||||||| ||||||||||||||||| | ||||||||||
Sbjct 353 AAGA---AGTA-ACAGAAGAAGAAGAAGAAAAGTCGAAAATAACAGAACTAAACAATGGG 408
Query 478 AGCACAAAAAGCATCAAGAAGATGAAACACAAAGCCAAGAAAGAAGAGAACAATTTCTCT 537
||| ||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||
Sbjct 409 AGCCCAATAAGCATCAAGAAGATGAAAAACAAAGCCAAGAAAGAAGAGAAAAATTGCTCT 468
Query 538 AATGATTCATCTAAAGTGACGAAGGAATTGGAGAAAACGGATTATATTCATGTTCGTGCA 597
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 469 AACGATTCATCTAAAGTGACGAAGGAACTGGAGAAAACGGATTATATTCATGTTCGTGCA 528
Query 598 CGACGAGGCCAAGCCACTGATAGTCACAGCATAGCAGAACGAGTTAGAAGAGAAAAGATC 657
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 529 CGTCGAGGCCAAGCCACTGATAGTCACAGCATAGCAGAGCGGGTTAGAAGAGAAAAGATT 588
Query 658 AGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCTGGATGCGACAAGATCACAGGCAAA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCTGGATGCGACAAGATCACAGGCAAA 648
Query 718 GCAGGGATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGTTC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 649 GCAGGGATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATTGAGTTC 708
Query 778 TTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTT 837
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TTATCGATGAAGCTAGCAGTTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTT 768
Query 838 GCCAAAGAGGT--T-GCCTCAACTCCAATGACTGTGGTGCCATCTCCTGAAATGGTTCTT 894
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GCCAAAGAGGTAATTGTCTCAACTCCAATGACTGTGGTGCCATCTCCTGAAATGGTTCAC 828
Query 895 TCCGGTTATTCTCATGAGATGGTTCACTCTGGTTATTCTAGTGAGATGGTTAACTCCGGT 954
|||||||||||||||||||||||| | || || ||||| | |||||||||||| ||||||
Sbjct 829 TCCGGTTATTCTCATGAGATGGTTAATTCCGGCTATTCCAATGAGATGGTTAATTCCGGT 888
Query 955 TACCTTCATGTCAATCCAATGCAGCAAGTG-AATACCAGTTCTGATCCATTGTCATGCTT 1013
|| | ||||||||||||||||||||||| | || ||||||||||||||| ||||||||||
Sbjct 889 TATCATCATGTCAATCCAATGCAGCAAGCGGAA-ACCAGTTCTGATCCACTGTCATGCTT 947
Query 1014 CAACAATGGCGAAGCTCCTTCGATGTGGGACTCTCATGTGCAGAATCTCTATGGCAATTT 1073
|||||||||| |||||||||| |||||||||||| ||||||||||||| ||||| | |||
Sbjct 948 CAACAATGGCCAAGCTCCTTCAATGTGGGACTCTTATGTGCAGAATCTTTATGGGAGTTT 1007
Query 1074 AGGAGTTTGATTAAGAA-ACCAATCCACAACATAACAATGTTCCCTAATTCAAATTATTC 1132
||||||||||||||||| | | || |||||| ||||||||||||||||||||||||||||
Sbjct 1008 AGGAGTTTGATTAAGAACAACGATTCACAACTTAACAATGTTCCCTAATTCAAATTATTC 1067
Query 1133 ATCGGAAGAGA-GAG----CAAACC-AGTAGCTGTTATTTACTAATT-CCACTAGATTAT 1185
||||||||||| ||| ||||| | ||||||||||||||||||| || |||||||||
Sbjct 1068 ATCGGAAGAGAAGAGAGAGCAAACTTA-TAGCTGTTATTTACTAATTTCC-CTAGATTAT 1125
Query 1186 TGACTTGAGATCCCCCGCCCATTAGTTGATGTATCAAAGAGTGTAGACATTATTGTGTAT 1245
||||||||||| ||||||||||| || |||||||||| | || | | | ||||||
Sbjct 1126 TGACTTGAGATTTCCCGCCCATTATTTTATGTATCAAA---T-TA-A-AG-A--GTGTAT 1176
Query 1246 AATTTGCAAACCAGTCCAGTAATATATTTCTTATCGGTGGAC 1287
|| |||||||||||| || ||||||||||| | ||||||
Sbjct 1177 AAATTGCAAACCAGT----TA-TATATTTCTTACCAGTGGAC 1213
> Ahg944446 jgi|Araly1|944446|scaffold_700675.1
Length=962
Score = 1517 bits (821), Expect = 0.0
Identities = 917/963 (95%), Gaps = 7/963 (1%)
Strand=Plus/Plus
Query 1625 TACGGAGA-GTATATATAAATGGAGGAGGAGAAGAAGAAGAGCAGAGTTTTGATCATCGG 1683
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TACGGAGAGGTAT-TATAAATGGAGGAGGAGAAGAAGAAGAGCAGAGTTTTGATCATCGG 62
Query 1684 AGCAACAGGAAGATTAGGGAACTATTTGACCCGTTTCAGCATCGAATCGGGTCACCCGAC 1743
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 63 AGCAACAGGAAGATTAGGCAACTATTTGACCCGTTTCAGCATCGAGTCGGGTCACCCGAC 122
Query 1744 TTTCGCTCTCATCAGAAACACCAC-TCTCTCCGATAAGCTGAAATCTCTCTCCGACGCCG 1802
|||||| |||||||||||| |||| || ||||| ||||||||||||||||| ||||||||
Sbjct 123 TTTCGCACTCATCAGAAACTCCACTTC-CTCCGCTAAGCTGAAATCTCTCTTCGACGCCG 181
Query 1803 GCGTTACCCTCCTCAAAGGTTCATTGGAGGATGAAGGAAGCTTAGCAGAAGCAGTGAGTA 1862
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 182 GCGTTACCCTCCTCAAAGGTTCATTGGAGGATGAAGGAAGCTTAGAAGAAGCAGTGAGTA 241
Query 1863 AAGTAGATGTGGTGATCTCTGCAATTCCATCAAAACATGTTCTTGATCAGAAACTCCTCG 1922
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AAGTAGATGTGGTGATCTCTGCAATTCCATCAAAACATGTTCTTGATCAGAAACTCCTCA 301
Query 1923 TCAGAGTTATCAAACAAGCTGGTTCCATCAAGAGGTTTATTCCTGCTGAATATGGAGCAA 1982
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCAAAGTCATCAAACAAGCTGGTTCCATCAAGAGGTTTATTCCTGCTGAATATGGAGCAA 361
Query 1983 ATCCTGATAAAACTCAAGTCTCGGATCTTGATCATGACTTCTATTCGAAGAAATCAGAGA 2042
||||||||||||||||| |||| ||||||||||||| |||||||| ||||||| ||||
Sbjct 362 ATCCTGATAAAACTCAAATCTCCGATCTTGATCATGGGTTCTATTCAAAGAAATGTGAGA 421
Query 2043 TTAGGCATATGATAGAATCAGAGGGGATTCCATATACATACATTTGCTGCGGACTGTTCA 2102
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 422 TTAAGCGTATGATAGAATCAGAGGGGATTCCATATACATACATTTGCTGCGGATTGTTCA 481
Query 2103 TGAGAGTTCTACTTCCATCGCTTGTGCAACCGGGGCTTCAATCTCCTCCAA-CAGATAAA 2161
||||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 482 TGAGAATTCTACTTCCATCGCTTGTGCAACCGGGGCTTCAATCGCCTCCAATC-GATAAA 540
Query 2162 GTCACAGTTTTTGGAGATGGAAACGTTAAAGCTGTTTTCGTGAATGATGTCGATGTTGCA 2221
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GTCACAGTTTTTGGAGATGGAAACGTTAAAGCTGTGTTCGTGAATGATGTCGATGTTGCA 600
Query 2222 GCATTTACTATCAAGACGATAGATGATCCTCGAACACTGAATAAGACCTTGTACCTTAGC 2281
|||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 601 GCATTTACCATCAAAACGATAGATGATCCTCGAACACTGAATAAAACATTGTACCTTAGA 660
Query 2282 CCGCCCGGAAACATATGTTCCATGAATGATCTTGTCGAGCTCTGGGAGGGCAAGATTGAG 2341
||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 661 CCGCCCGAAAACATATGTTCTATGAATGATCTTGTTGAGCTCTGGGAGGGCAAGATTGAG 720
Query 2342 AAGAAGCTTGAGAAAACGTTTGCTACAGAGAATCAACTTCTCAAGAAGATCAAAGAAACT 2401
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 721 AAGAAGCTTGAGAAAACATTTGTTACAGAGAGTCAACTTCTCAAGAAGATCAAAGAAACT 780
Query 2402 CCATATCCGGATAACATGGAGATGGTATTCATATACTCTGTCTTTATCAAAGGAGATCAC 2461
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 CCATATCCGGATAACATGGAGATGGTCTTCATATACTCTGTCTTTATCAAAGGAGATCAC 840
Query 2462 ACATACTTCGACATCGAGTCTTGTGGTGGAGTGAATGGTACTGAGCTTTACCCTGATGTC 2521
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 841 ACGTACTTCGACATCGAGTCTAGTGGTGAAGTGAATGGTACTGAGCTTTACCCTGATGTC 900
Query 2522 AAATACATGACCGTGAGCGAGTTTCTTGATACTCTTCTCTAGAATTATAAACCAAACAGC 2581
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 901 AAATACATGACCGTGAGCGAGTTTCTTGATACTCTTCTCTAGAATTATAA-CCAAATAGC 959
Query 2582 AAA 2584
|||
Sbjct 960 AAA 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105852790855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5