BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34550.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491203 jgi|Araly1|491203|fgenesh2_kg.7__636__AT4G34550.1 549 1e-155
> Ahg491203 jgi|Araly1|491203|fgenesh2_kg.7__636__AT4G34550.1
Length=705
Score = 549 bits (297), Expect = 1e-155
Identities = 370/404 (92%), Gaps = 9/404 (2%)
Strand=Plus/Plus
Query 219 TGTCGATGTAATACCTGACATGAACAAAGAACCACCTATTGTTGCGGACAGAGAAAACTC 278
||||||| |||||||||| |||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 174 TGTCGATTTAATACCTGATATGAACAAAGAACCGCCTATTGCTGCTGACAGAGAAAACTC 233
Query 279 GATAGATGGGGAAGAAGAAGAAGCAAGCAGTCAAGCTACTCAAAGTAAGAATGTGGAACA 338
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GATAGATGGGGACGAAGAAGAAGCAAGCAGTCAAGCTACTCAAAGTAAGAATGTGGAACA 293
Query 339 CTTTCTCAACAACAACACCAACTTGCTCAGAGAGTGCAAGCGTATATGGTCGGACTCTGA 398
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CTTTCT------CAACACCAACTTGCTCAGAGAGTGCAAGCGTATATGGTCGGACTCTGA 347
Query 399 AACCAACAGTAGATCACAAGTCAAACGTCTGAAGACAAACGCAGCAGATAACAGGGGAAA 458
|||||||| ||||||||| ||||||||||||||||||||| || |||||||||| |||||
Sbjct 348 AACCAACACTAGATCACATGTCAAACGTCTGAAGACAAACACATCAGATAACAGCGGAAA 407
Query 459 TGAAACCAAGAACATGATGGTTTTCGAAGAAGGACCATCA---GGGAAGAAGGTGAACCA 515
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 408 TGAAACCAAGAGCATGATGGTTTTCGAAGAAGGACCATCATCAGGGAAGAAGGTGAACTA 467
Query 516 CTTCTTCCACAGTATATTCGGAATGACCAATCTCGGATCAAGAAGATATCAAAAATTCTC 575
|||||| |||| ||||||||||| | ||| | |||||| |||||||||||||||| |||
Sbjct 468 CTTCTTTAACAGAATATTCGGAATCAACAAACCCGGATCCAGAAGATATCAAAAATCCTC 527
Query 576 CACATCACAAAACAAGAATCTGAATATGGGAGAAGCAGAAGACG 619
||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 528 CACATCACAAATCAAGAATCTGAATATGGGAGGAGGAGAAGACG 571
Score = 233 bits (126), Expect = 1e-60
Identities = 144/153 (94%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGAACATTTTATGGGCTTAAGCAAGATTAAGACAGAAAGTTGTGTTCATGGTTAT 60
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 1 ATGTCTGAACATTTTATGGGCTTAAACGAGATTAAGACAGAAAGTTGTGTTCGTGGTTAT 60
Query 61 GAATCTGCCTGGTTGAGTCGTTGGACTCCTAGTAACAAAAATGCCAAGGAGATTCACCTA 120
||||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||
Sbjct 61 GAATCTGCCTGGTTGAGTCGTTGGACTCCTAGTAACAGAGATGCCAAGGAGATTAACTTA 120
Query 121 CCAGAAGATGGTCACCTATTGAAAGAGTCAACA 153
|||||||||||||| |||||||||||||| |||
Sbjct 121 CCAGAAGATGGTCAACTATTGAAAGAGTCGACA 153
Score = 202 bits (109), Expect = 4e-51
Identities = 129/138 (93%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 703 GGCACTGTGCTAGAGAAGCAGCAGTTTCCAAGTATTGCAGCAATGGCAATGATGAGGAAG 762
||||||||||||||| | |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 571 GGCACTGTGCTAGAG-A--AGCAGTTTCCAAGTATTGTAGCAATGGCAATGATGAAGAAG 627
Query 763 GCTCTGAGCGGTATAAACCCTACCGGTTGTAGAAAGACCAACTCCCTCTTCGTTTGGAAT 822
||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 628 GCTCTGAGCGGTACAAACCCGACCGGCTGTAGAAAGACCAACTCCCTCTTCGTTTGGAAT 687
Query 823 GCTGAGGATTTAAGTTGA 840
|||||||||||||| |||
Sbjct 688 GCTGAGGATTTAAGGTGA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5