BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G34555.1

Length=611
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328285 jgi|Araly1|328285|fgenesh1_pm.C_scaffold_7000512           344    4e-94


> Ahg328285 jgi|Araly1|328285|fgenesh1_pm.C_scaffold_7000512
Length=210

 Score =  344 bits (186),  Expect = 4e-94
 Identities = 202/210 (96%), Gaps = 0/210 (0%)
 Strand=Plus/Plus

Query  251  ATGGTTTTGTTTGACCAAGCAACTTACGACAAGCTTCTCTCTGAGGCTCCCAAGTTCAAA  310
            |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTTCTGTTCGACCAAGCAACTTACGACAAGCTTCTCTCTGAGGCTCCCAAGTTCAAA  60

Query  311  CTTATCACTCCTTCTATCCTCTCTGACCGTTTGAGGATCAATGGATCGCTTGCTAGAAGG  370
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  61   CTTATCACTCCTTCTATCCTCTCTGACCGTTTGAGGATCAATGGATCCCTTGCTAGGAGG  120

Query  371  GCGATCAGAGAATTGATGGCTAAGGGAACAATCAGGATGGTCTCTGCTCACTCAAGCCAG  430
            || |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct  121  GCTATCAGAGAATTGATGGCTAAGGGAACGATCAGGATGGTCTCTGCTCACTCGAGTCAG  180

Query  431  CAGATCTACACTAGGGCAACCCACGGCTAA  460
            ||||||||||||||||||||||||||||||
Sbjct  181  CAGATCTACACTAGGGCAACCCACGGCTAA  210



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22340029362


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5