BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34560.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491201 jgi|Araly1|491201|fgenesh2_kg.7__634__AT4G34560.1 1315 0.0
> Ahg491201 jgi|Araly1|491201|fgenesh2_kg.7__634__AT4G34560.1
Length=987
Score = 1315 bits (712), Expect = 0.0
Identities = 906/996 (91%), Gaps = 28/996 (3%)
Strand=Plus/Plus
Query 93 ACAAACTGGTCCTTGTTCACCATGACTATTGTTCTTCTTCCTTTGTTTAATCTCCTGATG 152
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1 ACAAACTGGTCCATGTTCACCATGACTATTGTTCTTCTTCCTCTGTTTAATCTCTTTATG 60
Query 153 ACAAAACTCTCTG---CTACTCACTTTGTTTCCGTAAATATCACTTCTTTCGAGTGACCT 209
|||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||
Sbjct 61 GCAAAACTCTCTGCTTCTTCTCACTTCGTTTCCCTAAATATCACTTCTTTCGAGTGACCT 120
Query 210 AAATCACTTCCACGATCTCTTAAAAAAGCTCc-ttttcttgctttt-ttctgtg---ttt 264
|||||||| |||||||| ||| ||| ||| |||||||| |||| | ||||| |||
Sbjct 121 AAATCACTCCCACGATCCCTT---TAAG-TCCTTTTTCTTG-TTTTGTCCTGTGTTTTTT 175
Query 265 ttctttttGCAAGAATTCATCTTGATGGATCCAATTAAGTTTCAACACTTGAAGATGGAG 324
||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 176 TTCTTTTTGCAAGAAATCATCTTGATGGATCCAATTAAGTTCCAACACTTAAAGATGGAG 235
Query 325 AAATCCAGAGGAATCTTGAATTTCCAAGCAATAAGATCGTTCACGAGCTTGTTCAGACTG 384
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 236 AAATCCAGAGGAATCTTGAATTTCCAAGTAATAAGATCGTTCACGAGCTTGTTCAGACTG 295
Query 385 TTCGAGCTTCTTCTTCTTGTAATCTTGATCTCCAAACTCTCTTTCCCTTCTGTAAAAATC 444
||||||| ||| ||||| |||||||||| ||||||||||||||||| ||||| ||| ||
Sbjct 296 ATCGAGCTGCTTTTTCTTCTAATCTTGATTTCCAAACTCTCTTTCCCCTCTGTGAAACTC 355
Query 445 TCTGGGGACATTTTCAAGGAAGCAGCAGTGTTTCTCGTTAGCCCGAGATTCGTTTTCTTC 504
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCCGGGGACATTTTCAGGGAAGCAGCAGTGTTTCTCGTTAGCCCGAGATTCGTTTTCTTC 415
Query 505 ATCGGAAACGCAATTGTAATTACTCTTCTTGCGAAATCCGGACGATACAGCTCGAGTCAC 564
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 416 GTCGGAAACGCAATTGTAATTACTCTTTTTGCGAAATCCGGACGATACAGCTCGAGTCAG 475
Query 565 GAGCCTTCAAAGACAGCAACAGAAGCTGCAAGCAACGATCTTTACCAAGAATTTCTTCAC 624
||||||| ||||||| |||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 476 GAGCCTTTAAAGACAACAACAGAAGCTGAAAGTAACGATCTTTACCAAGATTTTCTTCAT 535
Query 625 AAGAGTGAGAAGAAGAAACCCGTAGTTTACGCTACGAAAACAGAACAACTAAAGAAGCCG 684
|||||||||||||| ||| | |||||||||| ||||||||||||||||| |||||||||
Sbjct 536 AAGAGTGAGAAGAAAAAATCTGTAGTTTACGAGACGAAAACAGAACAACTGAAGAAGCCG 595
Query 685 AGTGGAGGGA--A-GAGGGTTAGTTTCGGGAGAAGCCAATCGCACAAAGCGTTTGAGGCG 741
||||||| || | |||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 596 AGTGGAGTGATCAAGAGGGTTAGTTTCGGGAGAAGCCAATCGCAGAAAGCGCTTGAGGCG 655
Query 742 GTTAAGCCGCTGGAGAGTACCAATGGTGAGAAAAACATGAAGAGGTATGTGTCGGAGAAG 801
||| ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 656 GTTCAGCCGCTAGAGAGTACCAATGGTGAGAAAACCATAAAGAGGTATGTGTCGGAGAAG 715
Query 802 CATATGAGGGTTTGTGACTCCGACAAGAAAGTAGTGGTGAGAGTTAAGAAACCAGAAGAT 861
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 716 CATATGAGGATTTGTGACTCCGACAAGAAAGTAGTGGTGAGGGTTAAGAAACCAGAAGAT 775
Query 862 GGAATGAGCAACGAGCAATTTAGGACAAAGATTGAAGCTTTCATCGCTAGACAAAAGAGA 921
|||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 776 GGAATGAGTAACGAGCAATTTAGGACAAAGATTGAAGCTTTCATTGCGAGACAAAAGAGG 835
Query 922 ATTCAAAAGGATGAAGAACACTTGATAATCTAGCTAGATCCTCTTTGCTAGTGAATGttt 981
||||||||| |||||||||| || ||||||||| | ||||||||||||||||||||||
Sbjct 836 ATTCAAAAGAATGAAGAACATTTAATAATCTAG--A--TCCTCTTTGCTAGTGAATGTTT 891
Query 982 -ttt-t-ttt-ttttttttt-CCTTCTGGTTAT-A-AA-CTTGAATCCTCTGTTACGTAA 1033
||| | ||| ||||||||| |||| | ||||| | || ||||||||||||||| | |||
Sbjct 892 GTTTCTGTTTCTTTTTTTTTTCCTTTTTGTTATTATAAACTTGAATCCTCTGTTTCATAA 951
Query 1034 TCTTGTAACTTTGCCTTAGAAATTCTCTTTATCTTT 1069
|||||||||||||||||||||| |||||||||||||
Sbjct 952 TCTTGTAACTTTGCCTTAGAAAATCTCTTTATCTTT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5