BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34570.1
Length=1957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888609 jgi|Araly1|888609|Al_scaffold_0007_595 2771 0.0
Ahg480800 jgi|Araly1|480800|fgenesh2_kg.3__3501__AT2G16370.1 1539 0.0
> Ahg888609 jgi|Araly1|888609|Al_scaffold_0007_595
Length=1698
Score = 2771 bits (1500), Expect = 0.0
Identities = 1633/1699 (96%), Gaps = 2/1699 (0%)
Strand=Plus/Plus
Query 132 ATGAGGTGTTTGCAAAACTCCGCAAAGACTCTACCTTTAGCGTTTAAATCGGCATTGCTG 191
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 1 ATGAGGTGTTTGCAAAACTCCGCAAAGATTCTACCTTTAGCGTTTAAATCGGCTTTGTTA 60
Query 192 CCTTTGTCTCAAAGGTGGTTCTGTAAATTTTCTCCTAAGCCATCCTCATTGACAAACATT 251
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 61 CCTTTGTCTCAAAGGTGGTTCTGTAAATTTTCTCCTAAGCCATCCTCTTTGGCAAACATC 120
Query 252 TTCAAGGTTTCAATTTCAACCATGGCAAACACTCTCAATGGAAATGTGATCATGACTTCA 311
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 121 TTCAAGGTTTCAGTTTCAACCATGGCCAACACTCTCAATGGAAATGTGATCATGCCTTCA 180
Query 312 AAGCCTCAGAGTACTTACCAAGTTGTGGTAGCTGCAACCAAGGAAATGGGTATTGGTAAA 371
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAACCTCAGAGTACTTACCAAGTTGTGGTAGCTGCAACCAAGGAAATGGGTATTGGTAAA 240
Query 372 GACGGAAAACTTCCATGGAATTTGCCTACCGATCTCAAGTTCTTCAAGGATTTAACTTTG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACGGAAAACTTCCATGGAATTTGCCTACCGATCTCAAGTTCTTCAAGGATTTAACTTTG 300
Query 432 TCCACTTCGGATTCTGCTAAGAAGAACGCTGTTGTTATGGGTAGGAAAACGTGGGAGTCT 491
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 ACCACTTCGGATTCTGCTAAGAAGAACGCTGTTGTAATGGGTAGGAAAACGTGGGAGTCT 360
Query 492 ATTCCCAAAAAGTATAGGCCACTCTCTGGTCGCCTGAATGTTGTCTTGTCTCGTTCTAGC 551
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 361 ATTCCCACAAAGTATAGGCCACTCTCTGGTCGCCTGAATGTTGTCTTGACTCGTTCAAGC 420
Query 552 GGTTTCGATATAGCCAACACTGAAAATGTTGTAACTTGCAGTAGCATAGATTCTGCTCTA 611
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 GGTGTCGATATAGCCAACACTGAGAATGTTGTAACTTGCAGTAGCATAGATTCTGCTCTG 480
Query 612 GACTTATTAGCTGCACCTCCGTTTAGTCTGTCCATTGAGAAAGTGTTTGTAATAGGAGGT 671
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GACTTATTAGCTGCACCTCCGTTTAGTCTGTCCATTGAGAAGGTGTTTGTAATAGGAGGT 540
Query 672 GGCGACATATTGAGGGAAGCTTTGAATAAACCGAGCTGTGAAGCCATCCACATAACTGAG 731
|||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |||
Sbjct 541 GGCGACATATTGAGGGAAGCGTTGAATGGACCGAGCTGTGAAGCCATCCACTTAACGGAG 600
Query 732 ATTGATACAAGTATCGACTGTGATACATTTATTCCCACGGTTGACACTTCTGCATATCAG 791
|||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 601 ATTGATACAAGTATTGACTGTGATACATTTATTCCCGCGGTTGACACATCTGCATATCAG 660
Query 792 CCTTGGTGTTCGTCGTTTCCAATATGTGAAAATGGTCTTCGATTTTCCTTCACGACTCAT 851
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 661 CCTTGGTGTTCGTCATTTCCAATATGTGAAAATGGACTTCGATTTTCCTTCACGACTTAT 720
Query 852 GTTCGTGTAAAGAGTTCTTCTGCCGGTGAAGCCTCTGATGAGAGTGATGGGTCAAAGGTT 911
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 721 GTTCGTGTAAAGAGTTCTTCTGCCTGTGAATCCTCTGATGTGAGTGATGGGTCAAAGGTC 780
Query 912 CTTCAAGTTGATTGGAAGAAGTTTTCTTCTGTTCTTCCTAAAATGATTTTTGACCGGCAT 971
||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||
Sbjct 781 CTTCAAGTTGATTGGAAAAAGTTTTCTTCTTTTCTTCCTAAGATGATTTTTGACCGTCAT 840
Query 972 GAGGAATATCTCTACTTAAATCTGGTCAAAGAGATAATCTCAAATGGAAACTTAAAAGAC 1031
|| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 841 GAAGAATTTCTATACTTGAATCTGGTCAAAGAGATAATCTCAAATGGAAACTTAAAGGGC 900
Query 1032 GATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGATGAAATTCAATTTACGC 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGATGAAATTCAATTTACGC 960
Query 1092 AGGAATTTTCCACTTCTGACGACAAAGAGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTT 1151
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGGAATTTCCCACTTCTGACGACAAAGAGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTT 1020
Query 1152 CTATGGTTCATAAGCGGTTCAACCAATGCAAAGGTACTTCAAGAAAAGGGTATCCGTATA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTATGGTTCATAAGCGGTTCAACCAATGCAAAGGTACTTCAAGAAAAGGGTATCCGTATA 1080
Query 1212 TGGGATGGGAATGCGTCGAGAGCATATCTTGATGGTATTGGACTGACTGAGAGAGAGGAA 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 TGGGATGGGAATGCGTCGAGAGCATATCTTGATGGTATTGGACTGACTGAGAGAGAAGAA 1140
Query 1272 GGTGACCTTGGACCCGTTTATGGATTTCAGTGGAGACACTTTGGTGCTAAGTACACAGAT 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGTGACCTTGGACCCGTTTATGGATTTCAGTGGAGACACTTTGGTGCTAAGTACACAGAT 1200
Query 1332 ATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAGATC 1391
||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 1201 ATGCATGCTGATTATACGGGGCAAGGATTTGATCAGCTCTTAGATGTAATTCACAAGATC 1260
Query 1392 AAGAACAATCCTGATGATCGACGGATTATAATGTCAGCTTGGAATCCTTCTGATCTTAAG 1451
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1261 AAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAG 1320
Query 1452 CTGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTT 1511
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1321 CTGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTG 1380
Query 1512 TCATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGCC 1571
|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 1381 TCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGAGTACCATTTAACATTGCA 1440
Query 1572 TCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCGATCTTGTTCCTGGTGATTTT 1631
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1441 TCATACTCCCTTCTTACATGCATTCTCGCTCACGTCTGTGATCTTGTTCCTGGTGATTTT 1500
Query 1632 ATCCATGTGATTGGAGATGCTCATGTTTACAAAAACCATGTCAGGCCTCTGCAAGAGCAA 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 ATCCATGTGATTGGAGATGCTCATGTTTACAAAAACCATGTCAGGCCTCTGCAAGAGCAA 1560
Query 1692 CTTGAGAACCCACCAAAACCTTTTCCTGTTTTGAAGATAAATCCAGAGAAGAAAGATATA 1751
||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1561 CTTCAGAACCCACCAAAACCTTTTCCTGTTTTGAAGATAAAACCGGAGAAGAAAGATATA 1620
Query 1752 GATTCTTTTGT-TGCGGATGACTTTGAGCTCATTGGCTATGATCCTCACAAGAAAATAGA 1810
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1621 GATTCTTTTGTGT-CGGATGACTTCGAGCTCATTGGCTATGATCCTCACAAGAAAATAGA 1679
Query 1811 TATGAAAATGGCTGTTTAG 1829
|||||||||||| ||||||
Sbjct 1680 TATGAAAATGGCGGTTTAG 1698
> Ahg480800 jgi|Araly1|480800|fgenesh2_kg.3__3501__AT2G16370.1
Length=1837
Score = 1539 bits (833), Expect = 0.0
Identities = 1353/1599 (85%), Gaps = 55/1599 (3%)
Strand=Plus/Plus
Query 254 CAAGGTTTCAATTTCAACCATGGC-A-AAC-ACTCTCAATGGAAATGTGATC-A-T-GA- 306
|||||||| ||||| |||||||| | ||| ||||| ||||| |||| | | | | ||
Sbjct 88 CAAGGTTTTGATTTCCACCATGGCAACAACAACTCTAAATGGCAATGACA-CTACTAGAC 146
Query 307 ---CTTCAAAGCCTCAGAGTACTTACCAAGTTGTGGTAGCTGCAACCAAGGAAATGGGTA 363
||||| ||||||| || |||||||||||||| || |||||||| || ||||||||||
Sbjct 147 TTGCTTCAGAGCCTCAAAGGACTTACCAAGTTGTTGTTGCTGCAACTAAAGAAATGGGTA 206
Query 364 TTGGTAAAGACGGAAAACTT-CCATGGAATTTGCCTACCGATCTCAAGTTCTTCAAGGA- 421
|||||||||| || ||| || ||||||||||||||||| |||||||||||||| || ||
Sbjct 207 TTGGTAAAGATGGGAAA-TTGCCATGGAATTTGCCTACAGATCTCAAGTTCTTTAAAGAC 265
Query 422 TTTAACTTTGTCCACTTCGGATT-CTGCTAAGAAGAACGCTGTTGTTATGGGTAGGAAA- 479
|| |||||| ||||||| |||| || ||||||| || |||||||| ||||||| ||||
Sbjct 266 ATT-ACTTTGACCACTTCAGATTCCT-CTAAGAAAAATGCTGTTGTGATGGGTA-GAAAG 322
Query 480 ACGTGGGAGTCTATTCCCAA-AAAGTATAGGCCACTCTCTGGTCGCCTGAATGTTGTCTT 538
|| |||||| ||||| |||| ||| ||||||| || || ||||| || || ||||| ||
Sbjct 323 ACTTGGGAGGCTATT-CCAATTAAGCATAGGCCGCTTTCGGGTCGGCTTAACGTTGTTTT 381
Query 539 GTCTCGTTCTAG-CGGTTTCGATATAGCCAACACTGAAAATGTTGTAACTTGCAGTAGCA 597
|||| ||| | ||||| |||||||| |||||||| |||||||| |||||||||||
Sbjct 382 AACTCGCTCTGGTGGGTTT-GATATAGCTAACACTGAGAATGTTGTCACTTGCAGTAGTG 440
Query 598 TAGATTCTGCTCTAGACTTATTAGCTGCACCTCCGT-TTAGTCTGTCCATTGAGAAAGTG 656
||||||||||||| || |||||||||||||| |||| || || | || ||||||| |||
Sbjct 441 TAGATTCTGCTCTTGATTTATTAGCTGCACCGCCGTATT-GTTTATCTATTGAGAGGGTG 499
Query 657 TTTGTAATAGGAGGTGGCGACATATTGAGGGAAGCTTTGAATAAACCGAGCTGTGAAGCC 716
||||| ||||||||||| ||||||||||||||||| ||||| | || || ||||| ||
Sbjct 500 TTTGTTATAGGAGGTGGTGACATATTGAGGGAAGCATTGAACAGGCCTAGTTGTGATGCT 559
Query 717 ATCCACATAACTGAGATTGATACAAGTATCGACTGTGATACATTTATTCCCACGGTTGAC 776
||||| |||||||||||||||||||||| || |||||||| ||||| || ||||||||
Sbjct 560 ATCCATTTAACTGAGATTGATACAAGTATTGAATGTGATACGTTTATACCTGCGGTTGAC 619
Query 777 ACTTCTGCATATCAGCCTTGGTGTTCGTCGTTTCCAATATGTGAAAATGGTCTTCGATTT 836
|| ||| ||||||||||||||||| ||||||||| || ||||||||| ||||| |||
Sbjct 620 ACAACTGTTTATCAGCCTTGGTGTTCATCGTTTCCAGTAACTGAAAATGGACTTCGGTTT 679
Query 837 TCCTTCACGACTCATGTTCGTGTAAAGAGTTCTTCTGCCGGTGAAGCCTCTGATGAGAGT 896
| |||||||||| ||| |||||||| || | | | | | ||||||| ||
Sbjct 680 TGCTTCACGACTTTTGTCCGTGTAAAAAG----T-T--C--T--A----CTGATGAAAGC 724
Query 897 GATGGGTCAAAGGT-TCTTCAAGTTGATTGGAAGAAGTTTTCTTCTGTTCTTCCTAAAAT 955
||| |||| | || ||||||| ||||| |||||||| ||| || | ||||||| || ||
Sbjct 725 AATGTGTCACA-GTCTCTTCAATTTGATGGGAAGAAG-TTT-TTGT-TTCTTCCCAAGAT 780
Query 956 GATTTTTGACCGGCATGAGGAATATCTCTACTTAAATCTGGTCAAAGAGATAATCTCAAA 1015
| ||||||| | ||||||||||| ||| || || ||| |||| |||| || ||||| ||
Sbjct 781 GGTTTTTGATCAGCATGAGGAATTTCTGTATTTGAATATGGTTGAAGATATCATCTCTAA 840
Query 1016 TGGAAACTTAAAAG-ACGATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGA 1074
||| || | ||| | |||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 841 TGGCAA-TGCGAAGAATGATAGGACCGGGACTGGTACATTATCAAAATTTGGTTGCCAGA 899
Query 1075 TGAAATTCAATTTACGCAGGAA-TTTTCCACTTCTGACGACAAAGAGAGTTTTCTGGAGA 1133
||||| |||||||||||| ||| ||||||||||||||| || ||||||||||| ||||||
Sbjct 900 TGAAACTCAATTTACGCA-GAAGTTTTCCACTTCTGACAACTAAGAGAGTTTTTTGGAGA 958
Query 1134 GGTGTTGTTGAGGAACTTCTATGGTTCATAAGCGGTTCAACCAATGCAAAGGTACTTCAA 1193
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 959 GGTGTTGTTGAGGAACTTCTATGGTTTATAAGCGGTTCAACCAATGCAAAGGTTCTTCAG 1018
Query 1194 GAAAAGGGTATCCGTATATGGGATGGGAATGCGTCGAGAGCA-TATCTTGATGGTATTGG 1252
||||| ||||||| ||||||||||||||||||||| |||| | ||||| |||||||| ||
Sbjct 1019 GAAAAAGGTATCCATATATGGGATGGGAATGCGTCAAGAG-AGTATCTCGATGGTATCGG 1077
Query 1253 ACTGACTGAGAGAGAGGAAGGTGACCTTGGACCCGTTTATGGATTTCAGTGGAGACACTT 1312
||||| |||||||||||||| ||||||||||| || || |||||||| ||| |||||||
Sbjct 1078 TCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTT 1137
Query 1313 TGGTGCTAAGTACACAGATATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTT 1372
||||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||||
Sbjct 1138 TGGTGCTAAGTACACGGATATGCACGCTGATTATACTGGTCAAGGTTTTGATCAACTCTT 1197
Query 1373 AGATGTAATTAACAAGATCAAGAACAATCCTGATGATCGACGGATTATAATGTCAGCTTG 1432
|||||||||| |||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1198 AGATGTAATTGACAAAATCAAGAACAATCCTGATGATCGGCGTATTATAATGTCAGCTTG 1257
Query 1433 GAATCCTTCTGATCTTAAGCTGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTA 1492
|||||||||||| || ||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 1258 GAATCCTTCTGACCTCAAGTTGATGGCACTTCCTCCATGCCATATGTTTGCACAGTTCTA 1317
Query 1493 TGTTGCA-AATGGAGAACTTTCATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCG 1551
||| ||| || || ||||| |||||||||||||||||||||||||| |||||||| || |
Sbjct 1318 TGTGGCAGAAGGG-GAACTCTCATGTCAAATGTATCAGCGTTCAGCGGATATGGGCCTTG 1376
Query 1552 GCGTACCGTTTAACATTGCCTCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCG 1611
| || || ||||||||||| || ||||| |||||||| ||||| || |||||||| || |
Sbjct 1377 GTGTGCCATTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTGGCTCACGTGTGTG 1436
Query 1612 ATCTTGTTCCTGGTGATTTTATCCATGTGATTGGAGATGCTCATGTTTACAAAAAC-CAT 1670
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| | |||
Sbjct 1437 ATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATGTGTACAAAA-CTCAT 1495
Query 1671 GTCAGGCCTCTGCAAGAGCAACTTGAGAACCCACCAAAACCTTTTCCTGTTTTGAAGATA 1730
|| | ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1496 GTAATGCCTCTGCAAGAGCAACTTCTGAACCCACCTAAACCTTTTCCTGTTTTGAAGATA 1555
Query 1731 AATCCAGAGAAGAAAGATATAGATTCTTTTGTTGCGGATGACTTTGAGCTCATTGGCTAT 1790
|| |||||||||||| | || ||||||||||| || | ||||||||| |||| || |||
Sbjct 1556 AACCCAGAGAAGAAACAAATTGATTCTTTTGTGGCTGCTGACTTTGACCTCACAGGATAT 1615
Query 1791 GATCCTCACAAGAAAATAGATATGAAAATGGCTGTTTAG 1829
|||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1616 GATCCTCACAAGAAGATAGAGATGAAAATGGCGGTTTAG 1654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73552263095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5