BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G34580.1
Length=2767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888608 jgi|Araly1|888608|Al_scaffold_0007_594 2715 0.0
Ahg943888 jgi|Araly1|943888|scaffold_700117.1 577 2e-163
Ahg474628 jgi|Araly1|474628|fgenesh2_kg.1__4582__AT1G55690.1 115 2e-24
> Ahg888608 jgi|Araly1|888608|Al_scaffold_0007_594
Length=1665
Score = 2715 bits (1470), Expect = 0.0
Identities = 1601/1666 (96%), Gaps = 2/1666 (0%)
Strand=Plus/Plus
Query 96 ATGGCTGAGACCAAACCTGAAATAGAGATGTCGGAGGAAGAGAGGAAGATAGTGAAGATA 155
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGAGACCAAACCTGAAATAGAGATGTCGGAGGAAGAGAGGAAGATAGTGAAGATG 60
Query 156 AGCTCGCTGAAGAAGAAAGCGATAAATGCATCCAACAGATTCAAGAACTCCTTCAAGAAA 215
||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 61 TGCTCGTTGAAGAAGAAAGCGATAAATGCATCAAACAGATTCAAGAACTCATTCAAGAAA 120
Query 216 AAAGGTCGGAGAAGCAGCAGCAGAGTCATGTCCGTTCCGATTGAGGACGACATTGACGCA 275
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 121 AAAGGTCGGAGAAGCAGCAGCAGGGTCATGTCCGTGCCGATTGAGGACGACATTGACGCA 180
Query 276 GAAGATCTTCAAGCTCTTGATGCTTTTCGTCAAGCTCTTATCCTTGACGAGCTTTTGCCA 335
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 181 GAAGATCTTCAAGCTCTTGATGCTTTTCGTCAAGCTCTTGTCCTTGACGAGCTCTTGCCA 240
Query 336 TCCAAACTCGATGATCTCCACATGATGCTTCGATTTTTGAGAGCAAGAAAGTTTGACATT 395
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 241 TCCAAACTCGATGATCTCCACATGATGCTTCGATTCTTGAGGGCAAGAAAGTTTGACATT 300
Query 396 GAGAAAGCTAAGCAAATGTGGAGTGACATGATCCAATGGAGGAAAGATTTCGGCGCTGAC 455
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GAGAAAGCTAAGCAGATGTGGAGTGACATGATTCAATGGAGGAAAGATTTCGGCGCTGAC 360
Query 456 ACAATCATTGAGGATTTTGATTTCGAAGAAATTGATGAAGTGATGAAGCACTACCCTCAA 515
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 361 ACAATCATTGAGGATTTTGAGTTCGAAGAAATCGATGAAGTGATGAAGCACTACCCTCAA 420
Query 516 GGCTATCATGGAGTTGACAAGGAAGGCAGACCAGTTTACATTGAGAGACTAGGTCAAATC 575
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 GGCTATCACGGAGTAGACAAGGAAGGCAGACCAGTTTACATTGAGAGATTAGGTCAAATC 480
Query 576 GATGCTAACAAGCTACTCCAAGTGACAACAATGGACCGGTACGTGAAATATCATGTCAAA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATGCTAACAAGCTACTCCAAGTGACAACAATGGACCGGTACGTGAAATATCATGTCAAA 540
Query 636 GAGTTCGAGAAGACTTTCAAGGTCAAGTTCCCTTCTTGTTCTGTAGCAGCAAATAAACAC 695
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||
Sbjct 541 GAGTTCGAGAAGACTTTCAAGGTCAAGTTTCCTTCTTGTTCTGTCGCAGCGAATAAGCAT 600
Query 696 ATTGATCAGAGCACAACAATTCTTGACGTGCAAGGCGTGGGTCTTAAGAACTTCAGCAAA 755
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 ATTGATCAGAGCACAACAATTCTTGACGTGCAAGGCGTGGGGCTTAAGAACTTCAGCAAA 660
Query 756 TCTGCAAGAGAGCTTCTTCAAAGGCTTTGCAAGATTGACAATGAAAATTACCCTGAGACT 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTGCAAGAGAGCTTCTTCAAAGGCTTTGCAAGATTGACAATGAAAATTACCCTGAGACT 720
Query 816 TTGAACCGGATGTTTATCATCAATGCTGGTTCTGGATTCCGGCTCTTGTGGAGCACAGTT 875
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 721 TTGAACCGGATGTTTATCATCAATGCGGGTTCTGGGTTCCGGCTCTTGTGGAGCACAGTT 780
Query 876 AAGTCGTTTCTTGATCCCAAGACCACAGCAAAGATTCATGTTCTTGGGAACAAATATCAT 935
|| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 781 AAATCTTTTCTTGATCCCAAAACCACAGCAAAGATCCATGTTCTTGGGAACAAATATCAT 840
Query 936 AGCAAATTGCTCGAGGTCATCGATGCTAGTGAATTGCCTGAGTTCTTTGGAGGTGCTTGC 995
||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 841 AGCAAATTGCTTGAAGTCATTGATGCTAGTGAATTGCCAGAGTTCTTTGGAGGTGCTTGC 900
Query 996 ACTTGTGAAGACAAAGGAGGTTGTATGCGCTCTGACAAAGGTCCATGGAATGATCCTGAA 1055
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ACTTGTGAAGACAAAGGAGGTTGTATGCGCTCTGACAAAGGTCCATGGAATGATCCTGAG 960
Query 1056 GTTCTCAAGATCGCTATAAACCGTGAAGCTAAGTGTTCACCGATTTCAGAAGATGAACAC 1115
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 961 GTTCTCAAGATCGCTATAAACCGCGAAGCTAAATGCTCACCGATTTCAGAAGATGAACAC 1020
Query 1116 AAGCATGTAGACCAAGGAAGATCAACTTCAGGTTTCG-AAAGTCTTGAGAGAATCAAGAA 1174
|| |||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1021 AAACATGTAGACCAAGGAAGATCAACTTCAGCTT-CGGAAAGTCTTGAGAGAATCAAGAA 1079
Query 1175 GAAAACCGATGAAGATAATGTGTATGAGAAGCAAATTGCAACCATTGACAAGTCAATGGA 1234
||||||||||| |||||||||||||||||||||||| | ||||| |||||||||||| |
Sbjct 1080 GAAAACCGATGGAGATAATGTGTATGAGAAGCAAATCACTACCATCGACAAGTCAATGAA 1139
Query 1235 TATGGCATGGCTTGCCAAAACTCAGAAAGCTGAAAACTTTCCAATCTCTAAAGGGTTAGA 1294
||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 TATGGCATGGCCAGCAAAAACTCAGAAAGCTGAAAACTTTCCAATCTCTAAAGGGCTAGA 1199
Query 1295 GTGCTATGTTAGGAAAGGGGCACCCAAGAAAGGAGATGGATTACTTGTGGGAGGGGTCAT 1354
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 GTGTTACGTTAGGAAAGGGGCACCCAATAAAGGAGATGGATTACTTGTGGGAGGGGTCAT 1259
Query 1355 GGCCTTTGTGATGGGAATAGTTGCAATGGTTAGGCTATCAAAAGACGTTCCACGCAAACT 1414
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGCCTTTGTGATGGGCATTGTTGCAATGGTTAGGCTATCAAAAGACGTTCCACGCAAACT 1319
Query 1415 CACCGAGGCTGCTTTATATGGAAACTCAGTCTGTTATGAGGAATCTACAAAGTCTAAGCA 1474
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1320 CACTGAGGCTGCTTTATATGGAAACTCAGTTTGTTATGAAGAATCTACAAAGTCTAAGCA 1379
Query 1475 GAATCAAGGTCAATTCGCAGCACCAGTCTCGAGCTCTGAATATATGTTGATGGTGAAACG 1534
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1380 GAATCAAGGTCAATTCGCAGCACCAGTCTCGAGCTCTGAGTATATGTTGATGGTGAAACG 1439
Query 1535 TATGGCTGAGCTGGAAGATAAGTGCATGTTCCTTGACTTGAAACCTGCTCATGTCGAATC 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TATGGCTGAGCTGGAAGATAAGTGCATGTTCCTTGACTTGAAACCTGCTCATGTCGAATC 1499
Query 1595 TGAGAAAGAAGAGAAACTTCAGGCCGCGCTTAATCGCGTTCAAGTGCTTGAGCAAGAGTT 1654
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1500 TGAGAAAGAGGAGAAACTTCAGGCCGCGCTTAATCGTGTTCAAGTGCTTGAGCAAGAGTT 1559
Query 1655 GACTGAGACCAAGAAGGCTTTGGAAGAAGCACTTGTGAGCCAGAAGGAGATTTTGGCATA 1714
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1560 GACTGAGACCAAGAAGGCTTTGGAAGAAGCTCTTGTGAGCCAGAAGGAGATTTTGGCATA 1619
Query 1715 CATCGagaaaaagaagaagaagaagaagCTGTTTTTCGGATTCTAA 1760
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1620 CATCGAGAAAAAGAAGAAGAAGAAGAAGCTGTTTTTCGGGTTCTAA 1665
> Ahg943888 jgi|Araly1|943888|scaffold_700117.1
Length=1696
Score = 577 bits (312), Expect = 2e-163
Identities = 732/930 (79%), Gaps = 47/930 (5%)
Strand=Plus/Plus
Query 157 GCTCGCTGAAGAAGAAAGCGATAAATGC-ATCCAAC-AGATTCAAGAACTCCTTCAAGAA 214
|||| ||||||||||| || |||||||| | | ||| || || ||| ||||| | | ||
Sbjct 109 GCTCTCTGAAGAAGAAGGCAATAAATGCGA-CGAACAAG-TTTAAGCACTCCATGACCAA 166
Query 215 AAAAGGTCGGAGAAGCAGCAGCAGAGT--CATGTCCGTTC-CGATTGAGGACGACATTGA 271
||||||| || | ||| ||| | || | ||| | || | || | || || || ||
Sbjct 167 GAAAGGTC-GA-AGGCA-TAGCCGTGTGGCGTGT--G-TCTCAATCGTTGATGAAATCGA 220
Query 272 CGCAGAAGATCTTCAAGCTCTTGATGCTTTTCGTCAAGCTCTTATCCTT-GACGAGCT-T 329
| ||||| || ||||| |||||||||| |||||||||||||| || ||||| ||
Sbjct 221 TACGGAAGAGCTGCAAGCGGTTGATGCTTTCCGTCAAGCTCTTAT-TTTAGACGAACTAC 279
Query 330 TTGCCATCCAAACTCGATGATC-TCCACATGATGCTTCGATTTTTGAGAGCAAGAAAGTT 388
|| || || |||| |||||||| | |||||||||||| | || ||||| |||||||||||
Sbjct 280 TT-CCTTCTAAACACGATGATCAT-CACATGATGCTTAGGTTCTTGAGGGCAAGAAAGTT 337
Query 389 TGA-CATTGAGAAA-GCTAAGCAAATGTGGAG-TGACATGATCCAA-TGGAGGAAAG-AT 443
||| | | || ||| || ||||| |||||| | ||| ||| | || |||||||||| ||
Sbjct 338 TGATC-TCGA-AAAGGCGAAGCATATGTGG-GCTGATATGCT-TAACTGGAGGAAAGAAT 393
Query 444 TTCGGCGCTGACACAATCATTGAGGATTTTGATTTCGAAGAAATTGATGAAGTGATGAAG 503
| ||||| ||||| ||||| ||||| ||||||||| ||||||| || |||||| | ||
Sbjct 394 AT-GGCGCAGACACGATCATGGAGGACTTTGATTTCAAAGAAATCGACGAAGTGGTTCAG 452
Query 504 CACTACCCTCAAGGCTATCATGGAGTTGACAAGGAAGGCAGACC-AGTTTACATTGAGAG 562
| || || ||||| |||||||| |||||||||||||| ||||| | | || ||||||||
Sbjct 453 TATTATCCACAAGGATATCATGGTGTTGACAAGGAAGGAAGACCTA-TCTATATTGAGAG 511
Query 563 ACTAGGTCAAATCGATGCTAAC-AAGCT-ACTCCAAGTGACAACAATGGACCGGTACGTG 620
||||| ||| | ||||| || ||||| | | ||||||| ||||| || |||| |||
Sbjct 512 GCTAGGCCAAGTTGATGC-CACAAAGCTGA-TGAAAGTGACCACAATTGATAGGTATGTG 569
Query 621 AAATATCATGTCAAAGAGTTCGAGAAGACTTTCAAGGTCAAGTTCCCTTCTTGTTCTGTA 680
|| || ||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
Sbjct 570 AAGTACCATGTCAAAGAGTTCGAGAAGACTTTCAACGTCAAATTCCCGGCTTGTTCCATC 629
Query 681 GCAGCAAATAA-ACACATTGATCAGAGCACAACAATTCTTG-ACGTGCAAGGCGTGGGTC 738
|| || || || ||||||||||||||||||||| || |||| | || ||||||||||| |
Sbjct 630 GCTGCGAA-AAGACACATTGATCAGAGCACAACGAT-CTTGGATGTTCAAGGCGTGGGGC 687
Query 739 TTAAGAACTTCAGCAAATCTGCAAGAGAGCTTCTTCAAAGGCTTT-GCAAGATTGACAAT 797
|||| ||||||| |||| |||||| ||| |||||||| || || | || || |||||
Sbjct 688 TTAATAACTTCAACAAAGCTGCAAAAGATCTTCTTCAGAGTATTCAGAAA-ATCGACAAC 746
Query 798 GAAAATTACCCTGAGACTTTGAACCGGATGTTTATCATCAATGCTGGTTCTGGATTCCGG 857
|| || ||||| ||||| ||||||| ||||| |||||||||||||||| ||| || ||
Sbjct 747 GATAACTACCCGGAGACGCTGAACCGTATGTTCATCATCAATGCTGGTTATGGGTTTAGG 806
Query 858 CTCTTGTGGAGCACAGTTAAGTCGTTTC-TTGATCCCAA-GACCACAGCAAAGATTCATG 915
|| || ||||||||||| || || |||| |||| ||||| ||| ||||| |||||||| |
Sbjct 807 CTTTTATGGAGCACAGTGAAATC-TTTCCTTGA-CCCAAAGACTACAGCGAAGATTCACG 864
Query 916 TTCTTGGGAACAAATATCATAGCAAATTGCTCGAGGTCATCGATGCTAGTGAATTGCCTG 975
||||||| |||||||| || |||||| |||| || |||| || || | |||| ||||||
Sbjct 865 TTCTTGGCAACAAATACCAAAGCAAACTGCTAGAAATCATTGAGGCCAATGAACTGCCTG 924
Query 976 AGTTCTTTGGAGGTGCTTGCACTTGTGAAGACAAAGGAGGTTGTATGCGCTCTGACAAAG 1035
||||||| || ||| ||||| || | ||||||||| || |||||||| || |||||||
Sbjct 925 AGTTCTTGGGTGGTAAGTGCACCTGCGCAGACAAAGGTGGATGTATGCGTTCAGACAAAG 984
Query 1036 GTCCATGGAATGATCCTGAAGTTCT-CAAG 1064
|||||||||| || ||||| | ||| ||||
Sbjct 985 GTCCATGGAACGACCCTGA-GATCTTCAAG 1013
> Ahg474628 jgi|Araly1|474628|fgenesh2_kg.1__4582__AT1G55690.1
Length=2529
Score = 115 bits (62), Expect = 2e-24
Identities = 89/102 (87%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 465 GAGGATTTTGATTTCGAAGAAATTGATGAAGTGATG-AAGCACTACCCTCAAGGCTATCA 523
|||||||||||||||||||| |||| ||||| || || |||| ||||||||||||||
Sbjct 807 GAGGATTTTGATTTCGAAGAGCTTGAAGAAGTTTTGCAA-TACTATCCTCAAGGCTATCA 865
Query 524 TGGAGTTGACAAGGAAGGCAGACCAGTTTACATTGAGAGACT 565
|||||||||||||||||| ||||| || |||||||| |||||
Sbjct 866 TGGAGTTGACAAGGAAGGAAGACCTGTATACATTGAAAGACT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104405361545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5